RNA–Protein interactions for RNA: ENST00000456581.1

LINC00959-201, Transcript of HCG1648656, isoform CRA_a, humanhuman

TSL 2

Gene LINC00959, Length 2,843 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00959-201ENST00000456581 RBM25P49756 843 aaKnown RBP15.42■□□□□ 0.06
LINC00959-201ENST00000456581 SLC4A10Q6U841 1118 aa15.42■□□□□ 0.06
LINC00959-201ENST00000456581 CABLES1Q8TDN4 633 aa15.42■□□□□ 0.06
LINC00959-201ENST00000456581 KIAA0232Q92628 1395 aa15.41■□□□□ 0.06
LINC00959-201ENST00000456581 DDIT3P35638 169 aa15.41■□□□□ 0.06
LINC00959-201ENST00000456581 ARHGEF25Q86VW2 580 aa15.41■□□□□ 0.06
LINC00959-201ENST00000456581 C1orf167Q5SNV9 1468 aa15.41■□□□□ 0.06
LINC00959-201ENST00000456581 MAP3K5Q99683 1374 aa15.41■□□□□ 0.06
LINC00959-201ENST00000456581 KCNH5Q8NCM2 988 aa15.4■□□□□ 0.06
LINC00959-201ENST00000456581 OTUD7AQ8TE49 926 aaPredicted RBP15.4■□□□□ 0.06
LINC00959-201ENST00000456581 KIF24Q5T7B8 1368 aa15.4■□□□□ 0.06
LINC00959-201ENST00000456581 MEIS3Q99687 375 aa15.4■□□□□ 0.06
LINC00959-201ENST00000456581 GRPEL1Q9HAV7 217 aa15.4■□□□□ 0.06
LINC00959-201ENST00000456581 KCNQ3O43525 872 aa15.39■□□□□ 0.06
LINC00959-201ENST00000456581 SSFA2P28290 1259 aa15.39■□□□□ 0.06
LINC00959-201ENST00000456581 MPRIPQ6WCQ1 1025 aa15.39■□□□□ 0.06
LINC00959-201ENST00000456581 LTBP4Q8N2S1 1624 aa15.39■□□□□ 0.05
LINC00959-201ENST00000456581 ATF3P18847 181 aa15.39■□□□□ 0.05
LINC00959-201ENST00000456581 STRCP1A6NGW2 1772 aa15.39■□□□□ 0.05
LINC00959-201ENST00000456581 USP54Q70EL1 1684 aa15.39■□□□□ 0.05
LINC00959-201ENST00000456581 GSPT1P15170 499 aaKnown RBP15.39■□□□□ 0.05
LINC00959-201ENST00000456581 BMP2KLQ5H9B9 411 aa15.38■□□□□ 0.05
LINC00959-201ENST00000456581 INTS3Q68E01 1043 aaKnown RBP15.38■□□□□ 0.05
LINC00959-201ENST00000456581 ANKRD24Q8TF21 1146 aa15.38■□□□□ 0.05
LINC00959-201ENST00000456581 RTL1A6NKG5 1358 aa15.38■□□□□ 0.05
LINC00959-201ENST00000456581 NCOA3Q9Y6Q9 1424 aa15.38■□□□□ 0.05
LINC00959-201ENST00000456581 TAF7Q15545 349 aaPredicted RBP15.38■□□□□ 0.05
LINC00959-201ENST00000456581 PKP1Q13835 747 aa15.37■□□□□ 0.05
LINC00959-201ENST00000456581 ZNF530Q6P9A1 599 aaPredicted RBP15.37■□□□□ 0.05
LINC00959-201ENST00000456581 SMARCA5O60264 1052 aaPredicted RBP15.36■□□□□ 0.05
LINC00959-201ENST00000456581 HTATSF1O43719 755 aaKnown RBP15.35■□□□□ 0.05
LINC00959-201ENST00000456581 EIF2S2P20042 333 aaKnown RBP15.35■□□□□ 0.05
LINC00959-201ENST00000456581 DDX11L8A8MPP1 907 aa15.35■□□□□ 0.05
LINC00959-201ENST00000456581 CHRNA2Q15822 529 aa15.35■□□□□ 0.05
LINC00959-201ENST00000456581 CHMP4BQ9H444 224 aaKnown RBP15.35■□□□□ 0.05
LINC00959-201ENST00000456581 ANXA1P04083 346 aa15.35■□□□□ 0.05
LINC00959-201ENST00000456581 FKBP5Q13451 457 aaPredicted RBP15.35■□□□□ 0.05
LINC00959-201ENST00000456581 RAB3GAP1Q15042 981 aa15.35■□□□□ 0.05
LINC00959-201ENST00000456581 SNX21Q969T3 373 aa15.35■□□□□ 0.05
LINC00959-201ENST00000456581 MST1RQ04912 1400 aa15.34■□□□□ 0.05
LINC00959-201ENST00000456581 RGPD5Q99666 1765 aa15.34■□□□□ 0.05
LINC00959-201ENST00000456581 STK31Q9BXU1 1019 aa15.34■□□□□ 0.05
LINC00959-201ENST00000456581 PHAXQ9H814 394 aaKnown RBP15.34■□□□□ 0.05
LINC00959-201ENST00000456581 PXDNQ92626 1479 aa15.34■□□□□ 0.05
LINC00959-201ENST00000456581 MRE11P49959 708 aa15.34■□□□□ 0.05
LINC00959-201ENST00000456581 HAP1P54257 671 aaPredicted RBP15.34■□□□□ 0.05
LINC00959-201ENST00000456581 FLIIQ13045 1269 aa15.34■□□□□ 0.05
LINC00959-201ENST00000456581 PTPRCP08575 1304 aa15.34■□□□□ 0.05
LINC00959-201ENST00000456581 CLCN1P35523 988 aa15.33■□□□□ 0.04
LINC00959-201ENST00000456581 TRPM3Q9HCF6 1732 aaPredicted RBP15.33■□□□□ 0.04
LINC00959-201ENST00000456581 K7ELQ4 463 aaPredicted RBP15.33■□□□□ 0.04
LINC00959-201ENST00000456581 CEP85Q6P2H3 762 aa15.32■□□□□ 0.04
LINC00959-201ENST00000456581 GCC1Q96CN9 775 aa15.32■□□□□ 0.04
LINC00959-201ENST00000456581 ATP10DQ9P241 1426 aa15.32■□□□□ 0.04
LINC00959-201ENST00000456581 LRRC37A3O60309 1634 aa15.32■□□□□ 0.04
LINC00959-201ENST00000456581 PLEKHM2Q8IWE5 1019 aa15.32■□□□□ 0.04
LINC00959-201ENST00000456581 ESPNB1AK53 854 aa15.31■□□□□ 0.04
LINC00959-201ENST00000456581 HDGFL1Q5TGJ6 251 aa15.31■□□□□ 0.04
LINC00959-201ENST00000456581 CCDC30Q5VVM6 783 aa15.31■□□□□ 0.04
LINC00959-201ENST00000456581 CEMIPQ8WUJ3 1361 aa15.31■□□□□ 0.04
LINC00959-201ENST00000456581 NLRP2Q9NX02 1062 aa15.31■□□□□ 0.04
LINC00959-201ENST00000456581 SLIT3O75094 1523 aa15.3■□□□□ 0.04
LINC00959-201ENST00000456581 PRAMEF22A3QJZ6 481 aa15.3■□□□□ 0.04
LINC00959-201ENST00000456581 FOXD4L5Q5VV16 416 aaPredicted RBP15.3■□□□□ 0.04
LINC00959-201ENST00000456581 TSHZ3Q63HK5 1081 aa15.3■□□□□ 0.04
LINC00959-201ENST00000456581 FOXD4L4Q8WXT5 416 aaPredicted RBP15.3■□□□□ 0.04
LINC00959-201ENST00000456581 MED1Q15648 1581 aaPredicted RBP15.3■□□□□ 0.04
LINC00959-201ENST00000456581 EIF4A1P60842 406 aaKnown RBP15.3■□□□□ 0.04
LINC00959-201ENST00000456581 TEFQ10587 303 aa15.3■□□□□ 0.04
LINC00959-201ENST00000456581 PLEKHO1Q53GL0 409 aaPredicted RBP15.3■□□□□ 0.04
LINC00959-201ENST00000456581 ANKRD44Q8N8A2 993 aa15.3■□□□□ 0.04
LINC00959-201ENST00000456581 ERBB3P21860 1342 aa15.3■□□□□ 0.04
LINC00959-201ENST00000456581 BTBD11A6QL63 1104 aa15.29■□□□□ 0.04
LINC00959-201ENST00000456581 AKAP4Q5JQC9 854 aa15.29■□□□□ 0.04
LINC00959-201ENST00000456581 GBP4Q96PP9 640 aa15.29■□□□□ 0.04
LINC00959-201ENST00000456581 DCTPP1Q9H773 170 aa15.29■□□□□ 0.04
LINC00959-201ENST00000456581 CDC45O75419 566 aa15.29■□□□□ 0.04
LINC00959-201ENST00000456581 NCLP19338 710 aaKnown RBP15.28■□□□□ 0.04
LINC00959-201ENST00000456581 CHPF2Q9P2E5 772 aa15.28■□□□□ 0.04
LINC00959-201ENST00000456581 ZNF335Q9H4Z2 1342 aaPredicted RBP15.28■□□□□ 0.04
LINC00959-201ENST00000456581 RNMTO43148 476 aaKnown RBP15.28■□□□□ 0.04
LINC00959-201ENST00000456581 C1orf141Q5JVX7 400 aa15.28■□□□□ 0.04
LINC00959-201ENST00000456581 ZGPATQ8N5A5 531 aaKnown RBP15.28■□□□□ 0.04
LINC00959-201ENST00000456581 CADPS2Q86UW7 1296 aa15.27■□□□□ 0.04
LINC00959-201ENST00000456581 MCTP1Q6DN14 999 aa15.27■□□□□ 0.03
LINC00959-201ENST00000456581 CSB-PGBD3P0DP91 1061 aa15.26■□□□□ 0.03
LINC00959-201ENST00000456581 RBM27Q9P2N5 1060 aaKnown RBP15.26■□□□□ 0.03
LINC00959-201ENST00000456581 BAG4O95429 457 aaKnown RBP15.26■□□□□ 0.03
LINC00959-201ENST00000456581 DDX49Q9Y6V7 483 aaKnown RBP15.26■□□□□ 0.03
LINC00959-201ENST00000456581 CCT4P50991 539 aaKnown RBP15.25■□□□□ 0.03
LINC00959-201ENST00000456581 SLC39A6Q13433 755 aa15.25■□□□□ 0.03
LINC00959-201ENST00000456581 TTC22Q5TAA0 569 aa15.25■□□□□ 0.03
LINC00959-201ENST00000456581 EXOC6BQ9Y2D4 811 aa15.25■□□□□ 0.03
LINC00959-201ENST00000456581 ALS2Q96Q42 1657 aa15.25■□□□□ 0.03
LINC00959-201ENST00000456581 PHRF1Q9P1Y6 1649 aaKnown RBP15.25■□□□□ 0.03
LINC00959-201ENST00000456581 PNMA6EA0A0J9YXQ4 647 aa15.25■□□□□ 0.03
LINC00959-201ENST00000456581 SDSP20132 328 aa15.25■□□□□ 0.03
LINC00959-201ENST00000456581 PROSER3Q2NL68 480 aa15.25■□□□□ 0.03
LINC00959-201ENST00000456581 BRINP3Q76B58 766 aa15.25■□□□□ 0.03
LINC00959-201ENST00000456581 RPAP2Q8IXW5 612 aaPredicted RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms