RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 KLHL34Q8N239 644 aa22.93■■□□□ 1.26
PRPF40A-204ENST00000450303 LINC00116Q8NCU8 138 aa22.93■■□□□ 1.26
PRPF40A-204ENST00000450303 AK7Q96M32 723 aa22.93■■□□□ 1.26
PRPF40A-204ENST00000450303 POLD1P28340 1107 aa22.92■■□□□ 1.26
PRPF40A-204ENST00000450303 ITPK1Q13572 414 aa22.92■■□□□ 1.26
PRPF40A-204ENST00000450303 MSL1Q68DK7 614 aa22.92■■□□□ 1.26
PRPF40A-204ENST00000450303 AMIGO3Q86WK7 504 aa22.92■■□□□ 1.26
PRPF40A-204ENST00000450303 RBM42Q9BTD8 480 aaKnown RBP22.92■■□□□ 1.26
PRPF40A-204ENST00000450303 DCAF8L1A6NGE4 600 aa22.91■■□□□ 1.26
PRPF40A-204ENST00000450303 PHF14O94880 888 aa22.91■■□□□ 1.26
PRPF40A-204ENST00000450303 COL24A1Q17RW2 1714 aa22.91■■□□□ 1.26
PRPF40A-204ENST00000450303 U2SURPO15042 1029 aaKnown RBP22.9■■□□□ 1.26
PRPF40A-204ENST00000450303 HMGB2P26583 209 aaKnown RBP22.9■■□□□ 1.26
PRPF40A-204ENST00000450303 NFATC2IPQ8NCF5 419 aa22.9■■□□□ 1.26
PRPF40A-204ENST00000450303 COL3A1P02461 1466 aaPredicted RBP22.89■■□□□ 1.25
PRPF40A-204ENST00000450303 UBR3Q6ZT12 1888 aa22.89■■□□□ 1.25
PRPF40A-204ENST00000450303 AKAP4Q5JQC9 854 aa22.88■■□□□ 1.25
PRPF40A-204ENST00000450303 DIEXFQ68CQ4 756 aaKnown RBP22.88■■□□□ 1.25
PRPF40A-204ENST00000450303 FLAD1Q8NFF5 587 aa22.88■■□□□ 1.25
PRPF40A-204ENST00000450303 SLC4A9Q96Q91 983 aa22.88■■□□□ 1.25
PRPF40A-204ENST00000450303 SCN11AQ9UI33 1791 aa22.88■■□□□ 1.25
PRPF40A-204ENST00000450303 MTHFSDQ2M296 383 aaKnown RBP22.87■■□□□ 1.25
PRPF40A-204ENST00000450303 LGR6Q9HBX8 967 aa22.87■■□□□ 1.25
PRPF40A-204ENST00000450303 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.86■■□□□ 1.25
PRPF40A-204ENST00000450303 VIRMAQ69YN4 1812 aaKnown RBP22.85■■□□□ 1.25
PRPF40A-204ENST00000450303 GNPATO15228 680 aa22.85■■□□□ 1.25
PRPF40A-204ENST00000450303 PTCD1O75127 700 aaKnown RBP22.85■■□□□ 1.25
PRPF40A-204ENST00000450303 PPP2R1AP30153 589 aa22.83■■□□□ 1.25
PRPF40A-204ENST00000450303 RNMTO43148 476 aaKnown RBP22.82■■□□□ 1.24
PRPF40A-204ENST00000450303 CFAP53Q96M91 514 aa22.82■■□□□ 1.24
PRPF40A-204ENST00000450303 MAP3K5Q99683 1374 aa22.81■■□□□ 1.24
PRPF40A-204ENST00000450303 SSFA2P28290 1259 aa22.81■■□□□ 1.24
PRPF40A-204ENST00000450303 SLC52A2Q9HAB3 445 aa22.81■■□□□ 1.24
PRPF40A-204ENST00000450303 ANP32CO43423 234 aa22.8■■□□□ 1.24
PRPF40A-204ENST00000450303 NLGN2Q8NFZ4 835 aa22.8■■□□□ 1.24
PRPF40A-204ENST00000450303 ZNF831Q5JPB2 1677 aa22.79■■□□□ 1.24
PRPF40A-204ENST00000450303 YY1P25490 414 aa22.79■■□□□ 1.24
PRPF40A-204ENST00000450303 COL5A3P25940 1745 aaPredicted RBP22.79■■□□□ 1.24
PRPF40A-204ENST00000450303 SLC39A6Q13433 755 aa22.78■■□□□ 1.24
PRPF40A-204ENST00000450303 PELP1Q8IZL8 1130 aaKnown RBP22.77■■□□□ 1.24
PRPF40A-204ENST00000450303 RTCBQ9Y3I0 505 aaKnown RBP22.77■■□□□ 1.24
PRPF40A-204ENST00000450303 MYH14Q7Z406 1995 aaKnown RBP22.77■■□□□ 1.24
PRPF40A-204ENST00000450303 TRAPPC3LQ5T215 181 aa22.76■■□□□ 1.23
PRPF40A-204ENST00000450303 PRKAR2BP31323 418 aa22.75■■□□□ 1.23
PRPF40A-204ENST00000450303 GPR162Q16538 588 aa22.75■■□□□ 1.23
PRPF40A-204ENST00000450303 RC3H1Q5TC82 1133 aaKnown RBP22.75■■□□□ 1.23
PRPF40A-204ENST00000450303 PHACTR3Q96KR7 559 aa22.75■■□□□ 1.23
PRPF40A-204ENST00000450303 NUDCQ9Y266 331 aa22.75■■□□□ 1.23
PRPF40A-204ENST00000450303 U2AF1L5P0DN76 240 aaPredicted RBP22.74■■□□□ 1.23
PRPF40A-204ENST00000450303 U2AF1Q01081 240 aaKnown RBP eCLIP22.74■■□□□ 1.23
PRPF40A-204ENST00000450303 RALBP1Q15311 655 aa22.74■■□□□ 1.23
PRPF40A-204ENST00000450303 RSPH6AQ9H0K4 717 aa22.74■■□□□ 1.23
PRPF40A-204ENST00000450303 CNTNAP4Q9C0A0 1308 aa22.74■■□□□ 1.23
PRPF40A-204ENST00000450303 ADAMTS7Q9UKP4 1686 aa22.74■■□□□ 1.23
PRPF40A-204ENST00000450303 TJP1Q07157 1748 aa22.74■■□□□ 1.23
PRPF40A-204ENST00000450303 MRC1P22897 1456 aa22.73■■□□□ 1.23
PRPF40A-204ENST00000450303 RPS6KA4O75676 772 aa22.73■■□□□ 1.23
PRPF40A-204ENST00000450303 GAS2L2Q8NHY3 880 aa22.73■■□□□ 1.23
PRPF40A-204ENST00000450303 ARHGEF1Q92888 912 aaKnown RBP22.73■■□□□ 1.23
PRPF40A-204ENST00000450303 GNAT3A8MTJ3 354 aa22.72■■□□□ 1.23
PRPF40A-204ENST00000450303 CRKLP46109 303 aaKnown RBP22.72■■□□□ 1.23
PRPF40A-204ENST00000450303 DNAJC10Q8IXB1 793 aa22.72■■□□□ 1.23
PRPF40A-204ENST00000450303 IL17REQ8NFR9 667 aa22.72■■□□□ 1.23
PRPF40A-204ENST00000450303 RFC4P35249 363 aa22.69■■□□□ 1.22
PRPF40A-204ENST00000450303 PRKRIP1Q9H875 184 aaPredicted RBP22.69■■□□□ 1.22
PRPF40A-204ENST00000450303 MMP10P09238 476 aa22.68■■□□□ 1.22
PRPF40A-204ENST00000450303 ADRA2BP18089 450 aa22.68■■□□□ 1.22
PRPF40A-204ENST00000450303 TEFQ10587 303 aa22.68■■□□□ 1.22
PRPF40A-204ENST00000450303 INTS5Q6P9B9 1019 aaKnown RBP22.68■■□□□ 1.22
PRPF40A-204ENST00000450303 CD2APQ9Y5K6 639 aa22.68■■□□□ 1.22
PRPF40A-204ENST00000450303 KCPQ6ZWJ8 1503 aa22.67■■□□□ 1.22
PRPF40A-204ENST00000450303 CHD4Q14839 1912 aa22.67■■□□□ 1.22
PRPF40A-204ENST00000450303 C4AP0C0L4 1744 aa22.66■■□□□ 1.22
PRPF40A-204ENST00000450303 GYS1P13807 737 aa22.66■■□□□ 1.22
PRPF40A-204ENST00000450303 SRP68Q9UHB9 627 aaKnown RBP22.66■■□□□ 1.22
PRPF40A-204ENST00000450303 CICQ96RK0 1608 aaPredicted RBP22.66■■□□□ 1.22
PRPF40A-204ENST00000450303 FCHSD2O94868 740 aa22.65■■□□□ 1.22
PRPF40A-204ENST00000450303 CYP19A1P11511 503 aaPredicted RBP22.65■■□□□ 1.22
PRPF40A-204ENST00000450303 YBX3P16989 372 aaKnown RBP eCLIP22.65■■□□□ 1.224e-6■□□□□ 11.2
PRPF40A-204ENST00000450303 TTC5Q8N0Z6 440 aa22.65■■□□□ 1.22
PRPF40A-204ENST00000450303 NLGN1Q8N2Q7 840 aa22.65■■□□□ 1.22
PRPF40A-204ENST00000450303 CCDC87Q9NVE4 849 aa22.65■■□□□ 1.22
PRPF40A-204ENST00000450303 WWC3Q9ULE0 1092 aa22.65■■□□□ 1.22
PRPF40A-204ENST00000450303 SIPA1L3O60292 1781 aaPredicted RBP22.64■■□□□ 1.22
PRPF40A-204ENST00000450303 UBR2Q8IWV8 1755 aa22.63■■□□□ 1.21
PRPF40A-204ENST00000450303 MYBBP1AQ9BQG0 1328 aaKnown RBP22.62■■□□□ 1.21
PRPF40A-204ENST00000450303 ZNF790Q6PG37 636 aa22.61■■□□□ 1.21
PRPF40A-204ENST00000450303 MCM10Q7L590 875 aa22.61■■□□□ 1.21
PRPF40A-204ENST00000450303 ZNF496Q96IT1 587 aaPredicted RBP22.61■■□□□ 1.21
PRPF40A-204ENST00000450303 KCNQ3O43525 872 aa22.6■■□□□ 1.21
PRPF40A-204ENST00000450303 DCTN1Q14203 1278 aa22.6■■□□□ 1.21
PRPF40A-204ENST00000450303 VSIG10Q8N0Z9 540 aa22.6■■□□□ 1.21
PRPF40A-204ENST00000450303 ZBTB1Q9Y2K1 713 aa22.6■■□□□ 1.21
PRPF40A-204ENST00000450303 CEMIPQ8WUJ3 1361 aa22.6■■□□□ 1.21
PRPF40A-204ENST00000450303 SOS1Q07889 1333 aaPredicted RBP22.59■■□□□ 1.21
PRPF40A-204ENST00000450303 USP42Q9H9J4 1324 aaKnown RBP22.59■■□□□ 1.21
PRPF40A-204ENST00000450303 CANXP27824 592 aaKnown RBP22.59■■□□□ 1.21
PRPF40A-204ENST00000450303 FKBP8Q14318 412 aa22.59■■□□□ 1.21
PRPF40A-204ENST00000450303 RTF1Q92541 710 aaKnown RBP22.59■■□□□ 1.21
PRPF40A-204ENST00000450303 PARP3Q9Y6F1 533 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms