RNA–Protein interactions for RNA: ENST00000448611.6

LMNA-208, Transcript of lamin A/C, humanhuman

TSL 2 BASIC

Gene LMNA, Length 1,943 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-208ENST00000448611 FAM161AQ3B820 660 aa22.37■■□□□ 1.17
LMNA-208ENST00000448611 STK31Q9BXU1 1019 aa22.37■■□□□ 1.17
LMNA-208ENST00000448611 MEGF6O75095 1541 aa22.37■■□□□ 1.17
LMNA-208ENST00000448611 EIF4A1P60842 406 aaKnown RBP22.37■■□□□ 1.17
LMNA-208ENST00000448611 C8orf34Q49A92 452 aa22.37■■□□□ 1.17
LMNA-208ENST00000448611 COL16A1Q07092 1604 aaPredicted RBP22.37■■□□□ 1.17
LMNA-208ENST00000448611 VIRMAQ69YN4 1812 aaKnown RBP22.36■■□□□ 1.17
LMNA-208ENST00000448611 TATP17735 454 aaPredicted RBP22.35■■□□□ 1.17
LMNA-208ENST00000448611 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.35■■□□□ 1.17
LMNA-208ENST00000448611 ABCA3Q99758 1704 aa22.35■■□□□ 1.17
LMNA-208ENST00000448611 C1orf115Q9H7X2 142 aa22.35■■□□□ 1.17
LMNA-208ENST00000448611 BTBD11A6QL63 1104 aa22.34■■□□□ 1.17
LMNA-208ENST00000448611 HSPA1LP34931 641 aa22.34■■□□□ 1.17
LMNA-208ENST00000448611 KCNQ3O43525 872 aa22.33■■□□□ 1.17
LMNA-208ENST00000448611 HOXB7P09629 217 aa22.33■■□□□ 1.17
LMNA-208ENST00000448611 PRDM11Q9NQV5 511 aa22.33■■□□□ 1.17
LMNA-208ENST00000448611 SIPA1L3O60292 1781 aaPredicted RBP22.33■■□□□ 1.16
LMNA-208ENST00000448611 SPG7Q9UQ90 795 aa22.32■■□□□ 1.16
LMNA-208ENST00000448611 CACNA1FO60840 1977 aa22.32■■□□□ 1.16
LMNA-208ENST00000448611 FLIIQ13045 1269 aa22.31■■□□□ 1.16
LMNA-208ENST00000448611 HDGFL1Q5TGJ6 251 aa22.31■■□□□ 1.16
LMNA-208ENST00000448611 SIRT2Q8IXJ6 389 aa22.31■■□□□ 1.16
LMNA-208ENST00000448611 NECTIN2Q92692 538 aa22.31■■□□□ 1.16
LMNA-208ENST00000448611 PHKG2P15735 406 aa22.3■■□□□ 1.16
LMNA-208ENST00000448611 PKD1L3Q7Z443 1732 aa22.3■■□□□ 1.16
LMNA-208ENST00000448611 KDM6AO15550 1401 aaPredicted RBP22.29■■□□□ 1.16
LMNA-208ENST00000448611 MSH5O43196 834 aa22.29■■□□□ 1.16
LMNA-208ENST00000448611 WDR17Q8IZU2 1322 aa22.29■■□□□ 1.16
LMNA-208ENST00000448611 FBXO41Q8TF61 875 aa22.29■■□□□ 1.16
LMNA-208ENST00000448611 COL5A2P05997 1499 aaPredicted RBP22.29■■□□□ 1.16
LMNA-208ENST00000448611 F6X3S4 739 aa22.29■■□□□ 1.16
LMNA-208ENST00000448611 ANP32AP39687 249 aaKnown RBP22.29■■□□□ 1.16
LMNA-208ENST00000448611 CCT4P50991 539 aaKnown RBP22.29■■□□□ 1.16
LMNA-208ENST00000448611 HEG1Q9ULI3 1381 aa22.28■■□□□ 1.16
LMNA-208ENST00000448611 NUCB1Q02818 461 aa22.28■■□□□ 1.16
LMNA-208ENST00000448611 SCN11AQ9UI33 1791 aa22.28■■□□□ 1.16
LMNA-208ENST00000448611 GCC1Q96CN9 775 aa22.27■■□□□ 1.16
LMNA-208ENST00000448611 ATP10DQ9P241 1426 aa22.27■■□□□ 1.16
LMNA-208ENST00000448611 FKBP5Q13451 457 aaPredicted RBP22.27■■□□□ 1.16
LMNA-208ENST00000448611 IFNL2Q8IZJ0 200 aa22.27■■□□□ 1.16
LMNA-208ENST00000448611 CHMP4AQ9BY43 222 aa22.27■■□□□ 1.16
LMNA-208ENST00000448611 SLC4A10Q6U841 1118 aa22.26■■□□□ 1.15
LMNA-208ENST00000448611 MEIS3Q99687 375 aa22.26■■□□□ 1.15
LMNA-208ENST00000448611 CYP27B1O15528 508 aa22.25■■□□□ 1.15
LMNA-208ENST00000448611 SLC52A2Q9HAB3 445 aa22.25■■□□□ 1.15
LMNA-208ENST00000448611 JCADQ9P266 1359 aa22.25■■□□□ 1.15
LMNA-208ENST00000448611 PXDNLA1KZ92 1463 aa22.24■■□□□ 1.15
LMNA-208ENST00000448611 EIF2S2P20042 333 aaKnown RBP22.24■■□□□ 1.15
LMNA-208ENST00000448611 GIGYF1O75420 1035 aaPredicted RBP22.23■■□□□ 1.15
LMNA-208ENST00000448611 ANKRD44Q8N8A2 993 aa22.23■■□□□ 1.15
LMNA-208ENST00000448611 MRC1P22897 1456 aa22.23■■□□□ 1.15
LMNA-208ENST00000448611 TOM1L2Q6ZVM7 507 aa22.23■■□□□ 1.15
LMNA-208ENST00000448611 CHD1LQ86WJ1 897 aa22.23■■□□□ 1.15
LMNA-208ENST00000448611 RPAP2Q8IXW5 612 aaPredicted RBP22.23■■□□□ 1.15
LMNA-208ENST00000448611 PHAXQ9H814 394 aaKnown RBP22.23■■□□□ 1.15
LMNA-208ENST00000448611 N4BP2Q86UW6 1770 aaPredicted RBP22.23■■□□□ 1.15
LMNA-208ENST00000448611 COL22A1Q8NFW1 1626 aaPredicted RBP22.22■■□□□ 1.15
LMNA-208ENST00000448611 CEP85Q6P2H3 762 aa22.22■■□□□ 1.15
LMNA-208ENST00000448611 NPM2Q86SE8 214 aaKnown RBP22.22■■□□□ 1.15
LMNA-208ENST00000448611 DCAF5Q96JK2 942 aa22.22■■□□□ 1.15
LMNA-208ENST00000448611 CHPF2Q9P2E5 772 aa22.22■■□□□ 1.15
LMNA-208ENST00000448611 PARP4Q9UKK3 1724 aaKnown RBP22.22■■□□□ 1.15
LMNA-208ENST00000448611 NUTM2BA6NNL0 878 aaPredicted RBP22.21■■□□□ 1.15
LMNA-208ENST00000448611 NUTM2EB1AL46 878 aaPredicted RBP22.21■■□□□ 1.15
LMNA-208ENST00000448611 NUTM2AQ8IVF1 878 aaPredicted RBP22.21■■□□□ 1.15
LMNA-208ENST00000448611 IPO9Q96P70 1041 aaKnown RBP22.21■■□□□ 1.15
LMNA-208ENST00000448611 CARD10Q9BWT7 1032 aa22.2■■□□□ 1.14
LMNA-208ENST00000448611 HSP90AB1P08238 724 aaKnown RBP22.19■■□□□ 1.14
LMNA-208ENST00000448611 ZNF790Q6PG37 636 aa22.19■■□□□ 1.14
LMNA-208ENST00000448611 NFATC2IPQ8NCF5 419 aa22.19■■□□□ 1.14
LMNA-208ENST00000448611 LNPKQ9C0E8 428 aa22.19■■□□□ 1.14
LMNA-208ENST00000448611 DCTPP1Q9H773 170 aa22.19■■□□□ 1.14
LMNA-208ENST00000448611 ANKRD45Q5TZF3 282 aa22.18■■□□□ 1.14
LMNA-208ENST00000448611 DBF4Q9UBU7 674 aaPredicted RBP22.18■■□□□ 1.14
LMNA-208ENST00000448611 PRAMEF22A3QJZ6 481 aa22.18■■□□□ 1.14
LMNA-208ENST00000448611 SLC39A6Q13433 755 aa22.17■■□□□ 1.14
LMNA-208ENST00000448611 LARP1Q6PKG0 1096 aaKnown RBP22.17■■□□□ 1.14
LMNA-208ENST00000448611 ADAMTS2O95450 1211 aa22.16■■□□□ 1.14
LMNA-208ENST00000448611 STRN4Q9NRL3 753 aa22.16■■□□□ 1.14
LMNA-208ENST00000448611 PCDH11XQ9BZA7 1347 aa22.16■■□□□ 1.14
LMNA-208ENST00000448611 PCDH11YQ9BZA8 1340 aa22.16■■□□□ 1.14
LMNA-208ENST00000448611 GNAI3P08754 354 aa22.16■■□□□ 1.14
LMNA-208ENST00000448611 ZCRB1Q8TBF4 217 aaKnown RBP22.16■■□□□ 1.14
LMNA-208ENST00000448611 ANXA1P04083 346 aa22.15■■□□□ 1.14
LMNA-208ENST00000448611 GNAI2P04899 355 aa22.15■■□□□ 1.14
LMNA-208ENST00000448611 IL2RBP14784 551 aa22.15■■□□□ 1.14
LMNA-208ENST00000448611 EVA1CP58658 441 aa22.15■■□□□ 1.14
LMNA-208ENST00000448611 SPATA31A6Q5VVP1 1343 aa22.15■■□□□ 1.14
LMNA-208ENST00000448611 SEC24BO95487 1268 aa22.13■■□□□ 1.13
LMNA-208ENST00000448611 PROSER3Q2NL68 480 aa22.13■■□□□ 1.13
LMNA-208ENST00000448611 USP44Q9H0E7 712 aa22.13■■□□□ 1.13
LMNA-208ENST00000448611 ADCY9O60503 1353 aa22.13■■□□□ 1.13
LMNA-208ENST00000448611 C5P01031 1676 aa22.12■■□□□ 1.13
LMNA-208ENST00000448611 PI4KAP2A4QPH2 592 aa22.12■■□□□ 1.13
LMNA-208ENST00000448611 PI4KAP1Q8N8J0 262 aa22.12■■□□□ 1.13
LMNA-208ENST00000448611 DNAAF4Q8WXU2 420 aa22.12■■□□□ 1.13
LMNA-208ENST00000448611 ZNF496Q96IT1 587 aaPredicted RBP22.12■■□□□ 1.13
LMNA-208ENST00000448611 SHANK3Q9BYB0 1731 aa22.11■■□□□ 1.13
LMNA-208ENST00000448611 CABP4P57796 275 aa22.11■■□□□ 1.13
LMNA-208ENST00000448611 NKX1-1Q15270 411 aaPredicted RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms