RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 RNMTO43148 476 aaKnown RBP17.08■□□□□ 0.32
PRPF40A-203ENST00000448428 ATP6V1AP38606 617 aa17.08■□□□□ 0.32
PRPF40A-203ENST00000448428 ITPK1Q13572 414 aa17.08■□□□□ 0.32
PRPF40A-203ENST00000448428 PPP1R1BQ9UD71 204 aaPredicted RBP17.08■□□□□ 0.32
PRPF40A-203ENST00000448428 C4BP0C0L5 1744 aa17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 U2AF1L5P0DN76 240 aaPredicted RBP17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 U2AF1Q01081 240 aaKnown RBP eCLIP17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 COL23A1Q86Y22 540 aaPredicted RBP17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 LINC00116Q8NCU8 138 aa17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 SLC16A10Q8TF71 515 aa17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 PHACTR3Q96KR7 559 aa17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 SLC4A9Q96Q91 983 aa17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 SGIP1Q9BQI5 828 aa17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 RSPH6AQ9H0K4 717 aa17.07■□□□□ 0.32
PRPF40A-203ENST00000448428 PRKAR2BP31323 418 aa17.06■□□□□ 0.32
PRPF40A-203ENST00000448428 RBM42Q9BTD8 480 aaKnown RBP17.06■□□□□ 0.32
PRPF40A-203ENST00000448428 ADAMTS7Q9UKP4 1686 aa17.05■□□□□ 0.32
PRPF40A-203ENST00000448428 RALBP1Q15311 655 aa17.05■□□□□ 0.32
PRPF40A-203ENST00000448428 SLC52A2Q9HAB3 445 aa17.05■□□□□ 0.32
PRPF40A-203ENST00000448428 UBR3Q6ZT12 1888 aa17.04■□□□□ 0.32
PRPF40A-203ENST00000448428 MSH5O43196 834 aa17.04■□□□□ 0.32
PRPF40A-203ENST00000448428 FCHSD2O94868 740 aa17.04■□□□□ 0.32
PRPF40A-203ENST00000448428 SMIM5Q71RC9 77 aa17.04■□□□□ 0.32
PRPF40A-203ENST00000448428 AMIGO3Q86WK7 504 aa17.04■□□□□ 0.32
PRPF40A-203ENST00000448428 GAS2L2Q8NHY3 880 aa17.04■□□□□ 0.32
PRPF40A-203ENST00000448428 AK7Q96M32 723 aa17.04■□□□□ 0.32
PRPF40A-203ENST00000448428 ZNF831Q5JPB2 1677 aa17.04■□□□□ 0.32
PRPF40A-203ENST00000448428 GNAT3A8MTJ3 354 aa17.03■□□□□ 0.32
PRPF40A-203ENST00000448428 PTCD1O75127 700 aaKnown RBP17.03■□□□□ 0.32
PRPF40A-203ENST00000448428 COL24A1Q17RW2 1714 aa17.03■□□□□ 0.32
PRPF40A-203ENST00000448428 FLAD1Q8NFF5 587 aa17.02■□□□□ 0.32
PRPF40A-203ENST00000448428 IL17REQ8NFR9 667 aa17.02■□□□□ 0.32
PRPF40A-203ENST00000448428 MAP3K5Q99683 1374 aa17.02■□□□□ 0.31
PRPF40A-203ENST00000448428 MRC1P22897 1456 aa17.01■□□□□ 0.31
PRPF40A-203ENST00000448428 COL5A3P25940 1745 aaPredicted RBP17.01■□□□□ 0.31
PRPF40A-203ENST00000448428 PHF14O94880 888 aa17■□□□□ 0.31
PRPF40A-203ENST00000448428 SLC39A6Q13433 755 aa17■□□□□ 0.31
PRPF40A-203ENST00000448428 ARXQ96QS3 562 aa17■□□□□ 0.31
PRPF40A-203ENST00000448428 MYH14Q7Z406 1995 aaKnown RBP16.99■□□□□ 0.31
PRPF40A-203ENST00000448428 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.99■□□□□ 0.31
PRPF40A-203ENST00000448428 GNPATO15228 680 aa16.99■□□□□ 0.31
PRPF40A-203ENST00000448428 RC3H1Q5TC82 1133 aaKnown RBP16.99■□□□□ 0.31
PRPF40A-203ENST00000448428 SSFA2P28290 1259 aa16.98■□□□□ 0.31
PRPF40A-203ENST00000448428 MSL1Q68DK7 614 aa16.98■□□□□ 0.31
PRPF40A-203ENST00000448428 FHDC1Q9C0D6 1143 aaPredicted RBP16.98■□□□□ 0.31
PRPF40A-203ENST00000448428 SIPA1L3O60292 1781 aaPredicted RBP16.97■□□□□ 0.31
PRPF40A-203ENST00000448428 TJP1Q07157 1748 aa16.97■□□□□ 0.31
PRPF40A-203ENST00000448428 POLD1P28340 1107 aa16.97■□□□□ 0.31
PRPF40A-203ENST00000448428 SYT17Q9BSW7 474 aa16.97■□□□□ 0.31
PRPF40A-203ENST00000448428 MYBBP1AQ9BQG0 1328 aaKnown RBP16.96■□□□□ 0.31
PRPF40A-203ENST00000448428 TEFQ10587 303 aa16.96■□□□□ 0.31
PRPF40A-203ENST00000448428 PLEKHF1Q96S99 279 aa16.96■□□□□ 0.31
PRPF40A-203ENST00000448428 CNTNAP4Q9C0A0 1308 aa16.96■□□□□ 0.3
PRPF40A-203ENST00000448428 CEMIPQ8WUJ3 1361 aa16.95■□□□□ 0.3
PRPF40A-203ENST00000448428 RPS6KA4O75676 772 aa16.95■□□□□ 0.3
PRPF40A-203ENST00000448428 CRKLP46109 303 aaKnown RBP16.95■□□□□ 0.3
PRPF40A-203ENST00000448428 RTCBQ9Y3I0 505 aaKnown RBP16.95■□□□□ 0.3
PRPF40A-203ENST00000448428 DLG5Q8TDM6 1919 aa16.95■□□□□ 0.3
PRPF40A-203ENST00000448428 CICQ96RK0 1608 aaPredicted RBP16.95■□□□□ 0.3
PRPF40A-203ENST00000448428 KCPQ6ZWJ8 1503 aa16.95■□□□□ 0.3
PRPF40A-203ENST00000448428 TRAPPC3LQ5T215 181 aa16.94■□□□□ 0.3
PRPF40A-203ENST00000448428 DNAJC10Q8IXB1 793 aa16.94■□□□□ 0.3
PRPF40A-203ENST00000448428 PRKRIP1Q9H875 184 aaPredicted RBP16.94■□□□□ 0.3
PRPF40A-203ENST00000448428 UBR2Q8IWV8 1755 aa16.94■□□□□ 0.3
PRPF40A-203ENST00000448428 INTS5Q6P9B9 1019 aaKnown RBP16.93■□□□□ 0.3
PRPF40A-203ENST00000448428 MCM10Q7L590 875 aa16.93■□□□□ 0.3
PRPF40A-203ENST00000448428 RTF1Q92541 710 aaKnown RBP16.93■□□□□ 0.3
PRPF40A-203ENST00000448428 ARHGEF1Q92888 912 aaKnown RBP16.93■□□□□ 0.3
PRPF40A-203ENST00000448428 ZNF316A6NFI3 1004 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-203ENST00000448428 HTATSF1O43719 755 aaKnown RBP16.92■□□□□ 0.3
PRPF40A-203ENST00000448428 NEFMP07197 916 aa16.92■□□□□ 0.3
PRPF40A-203ENST00000448428 DCTN1Q14203 1278 aa16.92■□□□□ 0.3
PRPF40A-203ENST00000448428 ZNF790Q6PG37 636 aa16.92■□□□□ 0.3
PRPF40A-203ENST00000448428 TTC5Q8N0Z6 440 aa16.92■□□□□ 0.3
PRPF40A-203ENST00000448428 PNNQ9H307 717 aaKnown RBP16.92■□□□□ 0.3
PRPF40A-203ENST00000448428 BTBD11A6QL63 1104 aa16.91■□□□□ 0.3
PRPF40A-203ENST00000448428 CYP19A1P11511 503 aaPredicted RBP16.91■□□□□ 0.3
PRPF40A-203ENST00000448428 ADRA2BP18089 450 aa16.91■□□□□ 0.3
PRPF40A-203ENST00000448428 VSIG10Q8N0Z9 540 aa16.91■□□□□ 0.3
PRPF40A-203ENST00000448428 KLHL34Q8N239 644 aa16.91■□□□□ 0.3
PRPF40A-203ENST00000448428 ZNF496Q96IT1 587 aaPredicted RBP16.91■□□□□ 0.3
PRPF40A-203ENST00000448428 KCNQ3O43525 872 aa16.9■□□□□ 0.3
PRPF40A-203ENST00000448428 CCDC87Q9NVE4 849 aa16.9■□□□□ 0.3
PRPF40A-203ENST00000448428 RFC4P35249 363 aa16.89■□□□□ 0.29
PRPF40A-203ENST00000448428 NFE2L2Q16236 605 aa16.89■□□□□ 0.29
PRPF40A-203ENST00000448428 C4AP0C0L4 1744 aa16.89■□□□□ 0.29
PRPF40A-203ENST00000448428 DCAF8L1A6NGE4 600 aa16.88■□□□□ 0.29
PRPF40A-203ENST00000448428 HEG1Q9ULI3 1381 aa16.88■□□□□ 0.29
PRPF40A-203ENST00000448428 FMNL2Q96PY5 1086 aa16.87■□□□□ 0.29
PRPF40A-203ENST00000448428 MAPK8IP3Q9UPT6 1336 aa16.87■□□□□ 0.29
PRPF40A-203ENST00000448428 GYS1P13807 737 aa16.86■□□□□ 0.29
PRPF40A-203ENST00000448428 TAF7Q15545 349 aaPredicted RBP16.86■□□□□ 0.29
PRPF40A-203ENST00000448428 NLGN1Q8N2Q7 840 aa16.86■□□□□ 0.29
PRPF40A-203ENST00000448428 NLGN2Q8NFZ4 835 aa16.86■□□□□ 0.29
PRPF40A-203ENST00000448428 SRP68Q9UHB9 627 aaKnown RBP16.86■□□□□ 0.29
PRPF40A-203ENST00000448428 STARD3NLO95772 234 aa16.85■□□□□ 0.29
PRPF40A-203ENST00000448428 TEX13AQ9BXU3 409 aaPredicted RBP16.85■□□□□ 0.29
PRPF40A-203ENST00000448428 MIS18AQ9NYP9 233 aa16.85■□□□□ 0.29
PRPF40A-203ENST00000448428 ZBTB1Q9Y2K1 713 aa16.85■□□□□ 0.29
PRPF40A-203ENST00000448428 SOS1Q07889 1333 aaPredicted RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms