RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SLC4A9Q96Q91 983 aa28.17■■■□□ 2.1
SDC1-205ENST00000447124 NPC1L1Q9UHC9 1359 aa28.16■■■□□ 2.1
SDC1-205ENST00000447124 ATP6V1AP38606 617 aa28.16■■■□□ 2.1
SDC1-205ENST00000447124 AK7Q96M32 723 aa28.16■■■□□ 2.1
SDC1-205ENST00000447124 YY1P25490 414 aa28.15■■■□□ 2.1
SDC1-205ENST00000447124 HMOX1P09601 288 aa28.14■■■□□ 2.1
SDC1-205ENST00000447124 CABP4P57796 275 aa28.14■■■□□ 2.1
SDC1-205ENST00000447124 KLHL34Q8N239 644 aa28.14■■■□□ 2.1
SDC1-205ENST00000447124 C4BP0C0L5 1744 aa28.14■■■□□ 2.1
SDC1-205ENST00000447124 C1orf141Q5JVX7 400 aa28.13■■■□□ 2.09
SDC1-205ENST00000447124 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.12■■■□□ 2.09
SDC1-205ENST00000447124 DIAPH1O60610 1272 aaKnown RBP28.12■■■□□ 2.09
SDC1-205ENST00000447124 PHF14O94880 888 aa28.11■■■□□ 2.09
SDC1-205ENST00000447124 NFATC2IPQ8NCF5 419 aa28.11■■■□□ 2.09
SDC1-205ENST00000447124 NLGN2Q8NFZ4 835 aa28.1■■■□□ 2.09
SDC1-205ENST00000447124 RBM42Q9BTD8 480 aaKnown RBP28.1■■■□□ 2.09
SDC1-205ENST00000447124 SSFA2P28290 1259 aa28.08■■■□□ 2.09
SDC1-205ENST00000447124 AKAP4Q5JQC9 854 aa28.08■■■□□ 2.09
SDC1-205ENST00000447124 LGR6Q9HBX8 967 aa28.08■■■□□ 2.09
SDC1-205ENST00000447124 GNPATO15228 680 aa28.07■■■□□ 2.08
SDC1-205ENST00000447124 MTHFSDQ2M296 383 aaKnown RBP28.06■■■□□ 2.08
SDC1-205ENST00000447124 UBR3Q6ZT12 1888 aa28.06■■■□□ 2.08
SDC1-205ENST00000447124 UTRNP46939 3433 aa28.03■■■□□ 2.08
SDC1-205ENST00000447124 PTCD1O75127 700 aaKnown RBP28.03■■■□□ 2.08
SDC1-205ENST00000447124 COL3A1P02461 1466 aaPredicted RBP28.02■■■□□ 2.08
SDC1-205ENST00000447124 RNMTO43148 476 aaKnown RBP28.02■■■□□ 2.08
SDC1-205ENST00000447124 GPR162Q16538 588 aa28.02■■■□□ 2.08
SDC1-205ENST00000447124 RC3H1Q5TC82 1133 aaKnown RBP28.02■■■□□ 2.08
SDC1-205ENST00000447124 SLC52A2Q9HAB3 445 aa28■■■□□ 2.07
SDC1-205ENST00000447124 U2SURPO15042 1029 aaKnown RBP27.99■■■□□ 2.07
SDC1-205ENST00000447124 RTCBQ9Y3I0 505 aaKnown RBP27.99■■■□□ 2.07
SDC1-205ENST00000447124 TRAPPC3LQ5T215 181 aa27.98■■■□□ 2.07
SDC1-205ENST00000447124 CNTNAP4Q9C0A0 1308 aa27.97■■■□□ 2.07
SDC1-205ENST00000447124 RPS6KA4O75676 772 aa27.97■■■□□ 2.07
SDC1-205ENST00000447124 ARHGEF1Q92888 912 aaKnown RBP27.97■■■□□ 2.07
SDC1-205ENST00000447124 CD2APQ9Y5K6 639 aa27.97■■■□□ 2.07
SDC1-205ENST00000447124 PELP1Q8IZL8 1130 aaKnown RBP27.96■■■□□ 2.07
SDC1-205ENST00000447124 SLC39A6Q13433 755 aa27.95■■■□□ 2.06
SDC1-205ENST00000447124 SCN11AQ9UI33 1791 aa27.95■■■□□ 2.06
SDC1-205ENST00000447124 ZNF831Q5JPB2 1677 aa27.94■■■□□ 2.06
SDC1-205ENST00000447124 YBX3P16989 372 aaKnown RBP eCLIP27.94■■■□□ 2.06
SDC1-205ENST00000447124 PPP2R1AP30153 589 aa27.94■■■□□ 2.06
SDC1-205ENST00000447124 MYH14Q7Z406 1995 aaKnown RBP27.93■■■□□ 2.06
SDC1-205ENST00000447124 CRKLP46109 303 aaKnown RBP27.92■■■□□ 2.06
SDC1-205ENST00000447124 ADRA2BP18089 450 aa27.91■■■□□ 2.06
SDC1-205ENST00000447124 DNAJC10Q8IXB1 793 aa27.91■■■□□ 2.06
SDC1-205ENST00000447124 MMP10P09238 476 aa27.9■■■□□ 2.06
SDC1-205ENST00000447124 INTS5Q6P9B9 1019 aaKnown RBP27.9■■■□□ 2.06
SDC1-205ENST00000447124 IL17REQ8NFR9 667 aa27.9■■■□□ 2.06
SDC1-205ENST00000447124 PHACTR3Q96KR7 559 aa27.9■■■□□ 2.06
SDC1-205ENST00000447124 CFAP53Q96M91 514 aa27.89■■■□□ 2.06
SDC1-205ENST00000447124 COL5A3P25940 1745 aaPredicted RBP27.89■■■□□ 2.05
SDC1-205ENST00000447124 GYS1P13807 737 aa27.88■■■□□ 2.05
SDC1-205ENST00000447124 RFC4P35249 363 aa27.88■■■□□ 2.05
SDC1-205ENST00000447124 NLGN1Q8N2Q7 840 aa27.88■■■□□ 2.05
SDC1-205ENST00000447124 ZNF784Q8NCA9 323 aaPredicted RBP27.88■■■□□ 2.05
SDC1-205ENST00000447124 RSPH6AQ9H0K4 717 aa27.88■■■□□ 2.05
SDC1-205ENST00000447124 GOLGB1Q14789 3259 aaKnown RBP27.88■■■□□ 2.05
SDC1-205ENST00000447124 GAS2L2Q8NHY3 880 aa27.87■■■□□ 2.05
SDC1-205ENST00000447124 MRC1P22897 1456 aa27.87■■■□□ 2.05
SDC1-205ENST00000447124 PRKAR2BP31323 418 aa27.86■■■□□ 2.05
SDC1-205ENST00000447124 CHD4Q14839 1912 aa27.85■■■□□ 2.05
SDC1-205ENST00000447124 GNAT3A8MTJ3 354 aa27.85■■■□□ 2.05
SDC1-205ENST00000447124 ADAMTS7Q9UKP4 1686 aa27.84■■■□□ 2.05
SDC1-205ENST00000447124 GRIN3BO60391 1043 aa27.84■■■□□ 2.05
SDC1-205ENST00000447124 CYP19A1P11511 503 aaPredicted RBP27.84■■■□□ 2.05
SDC1-205ENST00000447124 SRP68Q9UHB9 627 aaKnown RBP27.84■■■□□ 2.05
SDC1-205ENST00000447124 NUDCQ9Y266 331 aa27.84■■■□□ 2.05
SDC1-205ENST00000447124 TJP1Q07157 1748 aa27.83■■■□□ 2.05
SDC1-205ENST00000447124 U2AF1L5P0DN76 240 aaPredicted RBP27.81■■■□□ 2.04
SDC1-205ENST00000447124 U2AF1Q01081 240 aaKnown RBP eCLIP27.81■■■□□ 2.04
SDC1-205ENST00000447124 CCDC87Q9NVE4 849 aa27.81■■■□□ 2.04
SDC1-205ENST00000447124 WWC3Q9ULE0 1092 aa27.81■■■□□ 2.04
SDC1-205ENST00000447124 KCPQ6ZWJ8 1503 aa27.81■■■□□ 2.04
SDC1-205ENST00000447124 VIRMAQ69YN4 1812 aaKnown RBP27.8■■■□□ 2.04
SDC1-205ENST00000447124 FKBP8Q14318 412 aa27.79■■■□□ 2.04
SDC1-205ENST00000447124 VSIG10Q8N0Z9 540 aa27.79■■■□□ 2.04
SDC1-205ENST00000447124 SOS1Q07889 1333 aaPredicted RBP27.78■■■□□ 2.04
SDC1-205ENST00000447124 USP42Q9H9J4 1324 aaKnown RBP27.78■■■□□ 2.04
SDC1-205ENST00000447124 TEFQ10587 303 aa27.78■■■□□ 2.04
SDC1-205ENST00000447124 CICQ96RK0 1608 aaPredicted RBP27.78■■■□□ 2.04
SDC1-205ENST00000447124 FCHSD2O94868 740 aa27.77■■■□□ 2.04
SDC1-205ENST00000447124 ZNF496Q96IT1 587 aaPredicted RBP27.76■■■□□ 2.03
SDC1-205ENST00000447124 ZBTB1Q9Y2K1 713 aa27.76■■■□□ 2.03
SDC1-205ENST00000447124 CEMIPQ8WUJ3 1361 aa27.75■■■□□ 2.03
SDC1-205ENST00000447124 KCNQ3O43525 872 aa27.75■■■□□ 2.03
SDC1-205ENST00000447124 ZNF790Q6PG37 636 aa27.75■■■□□ 2.03
SDC1-205ENST00000447124 PARP3Q9Y6F1 533 aa27.75■■■□□ 2.03
SDC1-205ENST00000447124 DDR1Q08345 913 aa27.74■■■□□ 2.03
SDC1-205ENST00000447124 USPL1Q5W0Q7 1092 aa27.74■■■□□ 2.03
SDC1-205ENST00000447124 TTC5Q8N0Z6 440 aa27.74■■■□□ 2.03
SDC1-205ENST00000447124 A0A0G2JLW4 131 aa27.73■■■□□ 2.03
SDC1-205ENST00000447124 TM4SF1P30408 202 aa27.73■■■□□ 2.03
SDC1-205ENST00000447124 TGFB2P61812 414 aa27.73■■■□□ 2.03
SDC1-205ENST00000447124 C4AP0C0L4 1744 aa27.72■■■□□ 2.03
SDC1-205ENST00000447124 PXDNLA1KZ92 1463 aa27.7■■■□□ 2.03
SDC1-205ENST00000447124 C10orf71Q711Q0 1435 aa27.7■■■□□ 2.03
SDC1-205ENST00000447124 ZPR1O75312 459 aa27.7■■■□□ 2.02
SDC1-205ENST00000447124 DPEP1P16444 411 aa27.7■■■□□ 2.02
SDC1-205ENST00000447124 CANXP27824 592 aaKnown RBP27.7■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms