RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 PLEKHO1Q53GL0 409 aaPredicted RBP14.78□□□□□ -0.04
SF3A1-203ENST00000444440 LINC00116Q8NCU8 138 aa14.78□□□□□ -0.04
SF3A1-203ENST00000444440 SLC4A9Q96Q91 983 aa14.78□□□□□ -0.04
SF3A1-203ENST00000444440 DLG5Q8TDM6 1919 aa14.78□□□□□ -0.04
SF3A1-203ENST00000444440 LOC102724428A0A0B4J2F2 783 aa14.77□□□□□ -0.05
SF3A1-203ENST00000444440 SIK1P57059 783 aa14.77□□□□□ -0.05
SF3A1-203ENST00000444440 SMARCC1Q92922 1105 aaPredicted RBP14.77□□□□□ -0.05
SF3A1-203ENST00000444440 MRC1P22897 1456 aa14.76□□□□□ -0.05
SF3A1-203ENST00000444440 ARXQ96QS3 562 aa14.76□□□□□ -0.05
SF3A1-203ENST00000444440 SYT17Q9BSW7 474 aa14.76□□□□□ -0.05
SF3A1-203ENST00000444440 ERVV-2B6SEH9 535 aa14.75□□□□□ -0.05
SF3A1-203ENST00000444440 DIAPH1O60610 1272 aaKnown RBP14.75□□□□□ -0.05
SF3A1-203ENST00000444440 AMOTQ4VCS5 1084 aa14.75□□□□□ -0.05
SF3A1-203ENST00000444440 MSL1Q68DK7 614 aa14.75□□□□□ -0.05
SF3A1-203ENST00000444440 SLC16A10Q8TF71 515 aa14.75□□□□□ -0.05
SF3A1-203ENST00000444440 DCAF5Q96JK2 942 aa14.75□□□□□ -0.05
SF3A1-203ENST00000444440 KIAA1551Q9HCM1 1747 aa14.75□□□□□ -0.05
SF3A1-203ENST00000444440 MAP3K5Q99683 1374 aa14.73□□□□□ -0.05
SF3A1-203ENST00000444440 KIF13BQ9NQT8 1826 aa14.73□□□□□ -0.05
SF3A1-203ENST00000444440 MSH5O43196 834 aa14.73□□□□□ -0.05
SF3A1-203ENST00000444440 KCPQ6ZWJ8 1503 aa14.72□□□□□ -0.05
SF3A1-203ENST00000444440 PHF14O94880 888 aa14.72□□□□□ -0.05
SF3A1-203ENST00000444440 HSP90AB1P08238 724 aaKnown RBP14.72□□□□□ -0.05
SF3A1-203ENST00000444440 ATP6V1AP38606 617 aa14.72□□□□□ -0.05
SF3A1-203ENST00000444440 MTHFSDQ2M296 383 aaKnown RBP14.72□□□□□ -0.05
SF3A1-203ENST00000444440 C1orf141Q5JVX7 400 aa14.72□□□□□ -0.05
SF3A1-203ENST00000444440 AK7Q96M32 723 aa14.72□□□□□ -0.05
SF3A1-203ENST00000444440 LGR6Q9HBX8 967 aa14.72□□□□□ -0.05
SF3A1-203ENST00000444440 N4BP2Q86UW6 1770 aaPredicted RBP14.71□□□□□ -0.05
SF3A1-203ENST00000444440 CABP4P57796 275 aa14.71□□□□□ -0.05
SF3A1-203ENST00000444440 AKAP4Q5JQC9 854 aa14.71□□□□□ -0.05
SF3A1-203ENST00000444440 NFATC2IPQ8NCF5 419 aa14.71□□□□□ -0.05
SF3A1-203ENST00000444440 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.7□□□□□ -0.06
SF3A1-203ENST00000444440 NLGN2Q8NFZ4 835 aa14.7□□□□□ -0.06
SF3A1-203ENST00000444440 RBM42Q9BTD8 480 aaKnown RBP14.7□□□□□ -0.06
SF3A1-203ENST00000444440 BRCA1P38398 1863 aaKnown RBP14.69□□□□□ -0.06
SF3A1-203ENST00000444440 PPP2R1AP30153 589 aa14.69□□□□□ -0.06
SF3A1-203ENST00000444440 KLHL34Q8N239 644 aa14.69□□□□□ -0.06
SF3A1-203ENST00000444440 U2SURPO15042 1029 aaKnown RBP14.68□□□□□ -0.06
SF3A1-203ENST00000444440 GNPATO15228 680 aa14.68□□□□□ -0.06
SF3A1-203ENST00000444440 RNMTO43148 476 aaKnown RBP14.68□□□□□ -0.06
SF3A1-203ENST00000444440 SSFA2P28290 1259 aa14.68□□□□□ -0.06
SF3A1-203ENST00000444440 POLD1P28340 1107 aa14.68□□□□□ -0.06
SF3A1-203ENST00000444440 AFDNP55196 1824 aaKnown RBP14.67□□□□□ -0.06
SF3A1-203ENST00000444440 PTCD1O75127 700 aaKnown RBP14.67□□□□□ -0.06
SF3A1-203ENST00000444440 SLC52A2Q9HAB3 445 aa14.67□□□□□ -0.06
SF3A1-203ENST00000444440 SLC39A6Q13433 755 aa14.66□□□□□ -0.06
SF3A1-203ENST00000444440 FLAD1Q8NFF5 587 aa14.66□□□□□ -0.06
SF3A1-203ENST00000444440 PHACTR3Q96KR7 559 aa14.65□□□□□ -0.06
SF3A1-203ENST00000444440 RSPH6AQ9H0K4 717 aa14.65□□□□□ -0.06
SF3A1-203ENST00000444440 CNTNAP4Q9C0A0 1308 aa14.65□□□□□ -0.06
SF3A1-203ENST00000444440 YY1P25490 414 aa14.63□□□□□ -0.07
SF3A1-203ENST00000444440 PRKAR2BP31323 418 aa14.63□□□□□ -0.07
SF3A1-203ENST00000444440 RC3H1Q5TC82 1133 aaKnown RBP14.63□□□□□ -0.07
SF3A1-203ENST00000444440 IL17REQ8NFR9 667 aa14.63□□□□□ -0.07
SF3A1-203ENST00000444440 CRKLP46109 303 aaKnown RBP14.62□□□□□ -0.07
SF3A1-203ENST00000444440 DNAJC10Q8IXB1 793 aa14.62□□□□□ -0.07
SF3A1-203ENST00000444440 ARHGEF1Q92888 912 aaKnown RBP14.62□□□□□ -0.07
SF3A1-203ENST00000444440 KDM3BQ7LBC6 1761 aa14.62□□□□□ -0.07
SF3A1-203ENST00000444440 RPS6KA4O75676 772 aa14.61□□□□□ -0.07
SF3A1-203ENST00000444440 YBX3P16989 372 aaKnown RBP eCLIP14.61□□□□□ -0.07
SF3A1-203ENST00000444440 HMGB2P26583 209 aaKnown RBP14.61□□□□□ -0.07
SF3A1-203ENST00000444440 INTS5Q6P9B9 1019 aaKnown RBP14.61□□□□□ -0.07
SF3A1-203ENST00000444440 CFAP53Q96M91 514 aa14.61□□□□□ -0.07
SF3A1-203ENST00000444440 RTCBQ9Y3I0 505 aaKnown RBP14.61□□□□□ -0.07
SF3A1-203ENST00000444440 SCN7AQ01118 1682 aa14.61□□□□□ -0.07
SF3A1-203ENST00000444440 CEMIPQ8WUJ3 1361 aa14.6□□□□□ -0.07
SF3A1-203ENST00000444440 BCORQ6W2J9 1755 aa14.6□□□□□ -0.07
SF3A1-203ENST00000444440 DCAF8L1A6NGE4 600 aa14.6□□□□□ -0.07
SF3A1-203ENST00000444440 NRXN2Q9P2S2 1712 aa14.6□□□□□ -0.07
SF3A1-203ENST00000444440 GNAT3A8MTJ3 354 aa14.59□□□□□ -0.07
SF3A1-203ENST00000444440 U2AF1L5P0DN76 240 aaPredicted RBP14.59□□□□□ -0.07
SF3A1-203ENST00000444440 GYS1P13807 737 aa14.59□□□□□ -0.07
SF3A1-203ENST00000444440 U2AF1Q01081 240 aaKnown RBP eCLIP14.59□□□□□ -0.07
SF3A1-203ENST00000444440 TRAPPC3LQ5T215 181 aa14.59□□□□□ -0.07
SF3A1-203ENST00000444440 GAS2L2Q8NHY3 880 aa14.59□□□□□ -0.07
SF3A1-203ENST00000444440 SRP68Q9UHB9 627 aaKnown RBP14.59□□□□□ -0.07
SF3A1-203ENST00000444440 LAMB4A4D0S4 1761 aa14.59□□□□□ -0.07
SF3A1-203ENST00000444440 ARFGEF1Q9Y6D6 1849 aa14.59□□□□□ -0.07
SF3A1-203ENST00000444440 MMP10P09238 476 aa14.58□□□□□ -0.08
SF3A1-203ENST00000444440 CYP19A1P11511 503 aaPredicted RBP14.58□□□□□ -0.08
SF3A1-203ENST00000444440 GPR162Q16538 588 aa14.58□□□□□ -0.08
SF3A1-203ENST00000444440 PELP1Q8IZL8 1130 aaKnown RBP14.58□□□□□ -0.08
SF3A1-203ENST00000444440 CD2APQ9Y5K6 639 aa14.58□□□□□ -0.08
SF3A1-203ENST00000444440 DLEC1Q9Y238 1755 aa14.57□□□□□ -0.08
SF3A1-203ENST00000444440 ANKRD31Q8N7Z5 1873 aa14.57□□□□□ -0.08
SF3A1-203ENST00000444440 KCNQ3O43525 872 aa14.57□□□□□ -0.08
SF3A1-203ENST00000444440 ADRA2BP18089 450 aa14.57□□□□□ -0.08
SF3A1-203ENST00000444440 WWC3Q9ULE0 1092 aa14.57□□□□□ -0.08
SF3A1-203ENST00000444440 C10orf71Q711Q0 1435 aa14.57□□□□□ -0.08
SF3A1-203ENST00000444440 PXDNLA1KZ92 1463 aa14.57□□□□□ -0.08
SF3A1-203ENST00000444440 RFC4P35249 363 aa14.56□□□□□ -0.08
SF3A1-203ENST00000444440 DDX10Q13206 875 aaKnown RBP14.56□□□□□ -0.08
SF3A1-203ENST00000444440 ZNF496Q96IT1 587 aaPredicted RBP14.56□□□□□ -0.08
SF3A1-203ENST00000444440 CCDC87Q9NVE4 849 aa14.56□□□□□ -0.08
SF3A1-203ENST00000444440 NUDCQ9Y266 331 aa14.56□□□□□ -0.08
SF3A1-203ENST00000444440 ZBTB1Q9Y2K1 713 aa14.56□□□□□ -0.08
SF3A1-203ENST00000444440 SOS1Q07889 1333 aaPredicted RBP14.56□□□□□ -0.08
SF3A1-203ENST00000444440 USP42Q9H9J4 1324 aaKnown RBP14.56□□□□□ -0.08
SF3A1-203ENST00000444440 CACNA1SQ13698 1873 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms