RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 POLKQ9UBT6 870 aa22.26■■□□□ 1.15
TTC28-202ENST00000431039 GIGYF1O75420 1035 aaPredicted RBP22.25■■□□□ 1.15
TTC28-202ENST00000431039 TMOD3Q9NYL9 352 aa22.25■■□□□ 1.15
TTC28-202ENST00000431039 CCER2I3L3R5 266 aa22.24■■□□□ 1.15
TTC28-202ENST00000431039 LINC00116Q8NCU8 138 aa22.24■■□□□ 1.15
TTC28-202ENST00000431039 CD2APQ9Y5K6 639 aa22.24■■□□□ 1.15
TTC28-202ENST00000431039 MYBBP1AQ9BQG0 1328 aaKnown RBP22.24■■□□□ 1.15
TTC28-202ENST00000431039 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.23■■□□□ 1.15
TTC28-202ENST00000431039 LOC102724428A0A0B4J2F2 783 aa22.23■■□□□ 1.15
TTC28-202ENST00000431039 SIK1P57059 783 aa22.23■■□□□ 1.15
TTC28-202ENST00000431039 PHKG2P15735 406 aa22.22■■□□□ 1.15
TTC28-202ENST00000431039 EIF4A2Q14240 407 aaKnown RBP22.22■■□□□ 1.15
TTC28-202ENST00000431039 IFNL2Q8IZJ0 200 aa22.22■■□□□ 1.15
TTC28-202ENST00000431039 ASAP1Q9ULH1 1129 aa22.22■■□□□ 1.15
TTC28-202ENST00000431039 PPP2R1AP30153 589 aa22.21■■□□□ 1.15
TTC28-202ENST00000431039 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.21■■□□□ 1.15
TTC28-202ENST00000431039 WWC3Q9ULE0 1092 aa22.2■■□□□ 1.14
TTC28-202ENST00000431039 SSFA2P28290 1259 aa22.19■■□□□ 1.14
TTC28-202ENST00000431039 ITPK1Q13572 414 aa22.19■■□□□ 1.14
TTC28-202ENST00000431039 ATP10DQ9P241 1426 aa22.18■■□□□ 1.14
TTC28-202ENST00000431039 GNPATO15228 680 aa22.18■■□□□ 1.14
TTC28-202ENST00000431039 ATP6V1AP38606 617 aa22.18■■□□□ 1.14
TTC28-202ENST00000431039 IGSF1Q8N6C5 1336 aa22.17■■□□□ 1.14
TTC28-202ENST00000431039 ATG3Q9NT62 314 aa22.17■■□□□ 1.14
TTC28-202ENST00000431039 COL5A3P25940 1745 aaPredicted RBP22.15■■□□□ 1.14
TTC28-202ENST00000431039 N4BP2Q86UW6 1770 aaPredicted RBP22.13■■□□□ 1.13
TTC28-202ENST00000431039 ZNF831Q5JPB2 1677 aa22.13■■□□□ 1.13
TTC28-202ENST00000431039 KIF13BQ9NQT8 1826 aa22.13■■□□□ 1.13
TTC28-202ENST00000431039 KDRP35968 1356 aa22.12■■□□□ 1.13
TTC28-202ENST00000431039 RBM42Q9BTD8 480 aaKnown RBP22.12■■□□□ 1.13
TTC28-202ENST00000431039 KIAA1551Q9HCM1 1747 aa22.11■■□□□ 1.13
TTC28-202ENST00000431039 MYH14Q7Z406 1995 aaKnown RBP22.1■■□□□ 1.13
TTC28-202ENST00000431039 CICQ96RK0 1608 aaPredicted RBP22.1■■□□□ 1.13
TTC28-202ENST00000431039 KDM6AO15550 1401 aaPredicted RBP22.1■■□□□ 1.13
TTC28-202ENST00000431039 C4AP0C0L4 1744 aa22.1■■□□□ 1.13
TTC28-202ENST00000431039 MTHFSP49914 203 aa22.1■■□□□ 1.13
TTC28-202ENST00000431039 CCDC184Q52MB2 194 aa22.1■■□□□ 1.13
TTC28-202ENST00000431039 ZNF530Q6P9A1 599 aaPredicted RBP22.1■■□□□ 1.13
TTC28-202ENST00000431039 ZNF526Q8TF50 670 aaPredicted RBP22.1■■□□□ 1.13
TTC28-202ENST00000431039 SLC4A9Q96Q91 983 aa22.1■■□□□ 1.13
TTC28-202ENST00000431039 PLEKHG2Q9H7P9 1386 aa22.1■■□□□ 1.13
TTC28-202ENST00000431039 MMP10P09238 476 aa22.09■■□□□ 1.13
TTC28-202ENST00000431039 PLEKHO1Q53GL0 409 aaPredicted RBP22.09■■□□□ 1.13
TTC28-202ENST00000431039 MRS2Q9HD23 443 aa22.09■■□□□ 1.13
TTC28-202ENST00000431039 ADCY9O60503 1353 aa22.09■■□□□ 1.13
TTC28-202ENST00000431039 ERVV-2B6SEH9 535 aa22.08■■□□□ 1.13
TTC28-202ENST00000431039 HSP90AB1P08238 724 aaKnown RBP22.08■■□□□ 1.13
TTC28-202ENST00000431039 AEBP1Q8IUX7 1158 aa22.08■■□□□ 1.13
TTC28-202ENST00000431039 DCAF5Q96JK2 942 aa22.08■■□□□ 1.13
TTC28-202ENST00000431039 GPBP1L1Q9HC44 474 aaPredicted RBP22.08■■□□□ 1.13
TTC28-202ENST00000431039 RTCBQ9Y3I0 505 aaKnown RBP22.08■■□□□ 1.13
TTC28-202ENST00000431039 VIRMAQ69YN4 1812 aaKnown RBP22.06■■□□□ 1.12
TTC28-202ENST00000431039 TRAPPC3LQ5T215 181 aa22.06■■□□□ 1.12
TTC28-202ENST00000431039 SCN11AQ9UI33 1791 aa22.05■■□□□ 1.12
TTC28-202ENST00000431039 PXDNLA1KZ92 1463 aa22.05■■□□□ 1.12
TTC28-202ENST00000431039 CABP4P57796 275 aa22.05■■□□□ 1.12
TTC28-202ENST00000431039 CFAP53Q96M91 514 aa22.05■■□□□ 1.12
TTC28-202ENST00000431039 CEP350Q5VT06 3117 aa22.04■■□□□ 1.12
TTC28-202ENST00000431039 TJP1Q07157 1748 aa22.03■■□□□ 1.12
TTC28-202ENST00000431039 AMOTQ4VCS5 1084 aa22.03■■□□□ 1.12
TTC28-202ENST00000431039 ARHGEF1Q92888 912 aaKnown RBP22.03■■□□□ 1.12
TTC28-202ENST00000431039 CNTNAP4Q9C0A0 1308 aa22.03■■□□□ 1.12
TTC28-202ENST00000431039 BRCA1P38398 1863 aaKnown RBP22.03■■□□□ 1.12
TTC28-202ENST00000431039 C1orf141Q5JVX7 400 aa22.02■■□□□ 1.12
TTC28-202ENST00000431039 PNISRQ8TF01 805 aaKnown RBP22.02■■□□□ 1.12
TTC28-202ENST00000431039 C10orf71Q711Q0 1435 aa22.01■■□□□ 1.11
TTC28-202ENST00000431039 PTCD1O75127 700 aaKnown RBP22.01■■□□□ 1.11
TTC28-202ENST00000431039 RFC4P35249 363 aa22.01■■□□□ 1.11
TTC28-202ENST00000431039 RC3H1Q5TC82 1133 aaKnown RBP22.01■■□□□ 1.11
TTC28-202ENST00000431039 SULT6B1Q6IMI4 303 aa22.01■■□□□ 1.11
TTC28-202ENST00000431039 NLGN1Q8N2Q7 840 aa22.01■■□□□ 1.11
TTC28-202ENST00000431039 RPS6KA4O75676 772 aa22■■□□□ 1.11
TTC28-202ENST00000431039 ADRA2BP18089 450 aa22■■□□□ 1.11
TTC28-202ENST00000431039 A0A0G2JLW4 131 aa21.99■■□□□ 1.11
TTC28-202ENST00000431039 GYS1P13807 737 aa21.99■■□□□ 1.11
TTC28-202ENST00000431039 BCS1LQ9Y276 419 aa21.99■■□□□ 1.11
TTC28-202ENST00000431039 NFATC2IPQ8NCF5 419 aa21.98■■□□□ 1.11
TTC28-202ENST00000431039 CCDC87Q9NVE4 849 aa21.98■■□□□ 1.11
TTC28-202ENST00000431039 TGFB2P61812 414 aa21.97■■□□□ 1.11
TTC28-202ENST00000431039 PARP3Q9Y6F1 533 aa21.97■■□□□ 1.11
TTC28-202ENST00000431039 IL13P35225 146 aa21.96■■□□□ 1.11
TTC28-202ENST00000431039 CRKLP46109 303 aaKnown RBP21.96■■□□□ 1.11
TTC28-202ENST00000431039 ARFGEF1Q9Y6D6 1849 aa21.96■■□□□ 1.11
TTC28-202ENST00000431039 DIAPH1O60610 1272 aaKnown RBP21.95■■□□□ 1.1
TTC28-202ENST00000431039 DPEP1P16444 411 aa21.95■■□□□ 1.1
TTC28-202ENST00000431039 SRP68Q9UHB9 627 aaKnown RBP21.95■■□□□ 1.1
TTC28-202ENST00000431039 NUDCQ9Y266 331 aa21.94■■□□□ 1.1
TTC28-202ENST00000431039 COL3A1P02461 1466 aaPredicted RBP21.94■■□□□ 1.1
TTC28-202ENST00000431039 ARHGAP27Q6ZUM4 889 aa21.93■■□□□ 1.1
TTC28-202ENST00000431039 ADAMTS7Q9UKP4 1686 aa21.93■■□□□ 1.1
TTC28-202ENST00000431039 FCHSD2O94868 740 aa21.92■■□□□ 1.1
TTC28-202ENST00000431039 HSPA6P17066 643 aa21.92■■□□□ 1.1
TTC28-202ENST00000431039 WDR43Q15061 677 aaKnown RBP eCLIP21.92■■□□□ 1.1
TTC28-202ENST00000431039 USP42Q9H9J4 1324 aaKnown RBP21.91■■□□□ 1.1
TTC28-202ENST00000431039 KIF3CO14782 793 aa21.91■■□□□ 1.1
TTC28-202ENST00000431039 FKBP8Q14318 412 aa21.91■■□□□ 1.1
TTC28-202ENST00000431039 FAM9BQ8IZU0 186 aa21.91■■□□□ 1.1
TTC28-202ENST00000431039 HMOX1P09601 288 aa21.9■■□□□ 1.1
TTC28-202ENST00000431039 AKAP4Q5JQC9 854 aa21.9■■□□□ 1.1
TTC28-202ENST00000431039 DDR1Q08345 913 aa21.89■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms