RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 NBPF4Q96M43 638 aa15.78■□□□□ 0.12
PTCH1-207ENST00000429896 ZBTB3Q9H5J0 574 aa15.78■□□□□ 0.12
PTCH1-207ENST00000429896 TRMT112Q9UI30 125 aaKnown RBP15.78■□□□□ 0.12
PTCH1-207ENST00000429896 FER1L4A9Z1Z3 1794 aa15.77■□□□□ 0.12
PTCH1-207ENST00000429896 KIAA0232Q92628 1395 aa15.77■□□□□ 0.12
PTCH1-207ENST00000429896 RSPH6AQ9H0K4 717 aa15.77■□□□□ 0.11
PTCH1-207ENST00000429896 DNAAF4Q8WXU2 420 aa15.76■□□□□ 0.11
PTCH1-207ENST00000429896 FRMPD1Q5SYB0 1578 aa15.76■□□□□ 0.11
PTCH1-207ENST00000429896 CCDC27Q2M243 656 aa15.76■□□□□ 0.11
PTCH1-207ENST00000429896 APPP05067 770 aa15.76■□□□□ 0.11
PTCH1-207ENST00000429896 SIL1Q9H173 461 aa15.75■□□□□ 0.11
PTCH1-207ENST00000429896 NKTRP30414 1462 aaKnown RBP15.75■□□□□ 0.11
PTCH1-207ENST00000429896 CCDC158Q5M9N0 1113 aa15.75■□□□□ 0.11
PTCH1-207ENST00000429896 TTC39AQ5SRH9 613 aa15.75■□□□□ 0.11
PTCH1-207ENST00000429896 MVPQ14764 893 aaKnown RBP15.75■□□□□ 0.11
PTCH1-207ENST00000429896 SPATA31D1Q6ZQQ2 1576 aa15.75■□□□□ 0.11
PTCH1-207ENST00000429896 TFCP2L1Q9NZI6 479 aa15.75■□□□□ 0.11
PTCH1-207ENST00000429896 SPATA31A3Q5VYP0 1347 aa15.75■□□□□ 0.11
PTCH1-207ENST00000429896 SSH1Q8WYL5 1049 aa15.74■□□□□ 0.11
PTCH1-207ENST00000429896 PREX1Q8TCU6 1659 aa15.74■□□□□ 0.11
PTCH1-207ENST00000429896 RXRBP28702 533 aa15.74■□□□□ 0.11
PTCH1-207ENST00000429896 RPGRQ92834 1020 aaKnown RBP15.74■□□□□ 0.11
PTCH1-207ENST00000429896 PTCH1Q13635 1447 aa15.74■□□□□ 0.11
PTCH1-207ENST00000429896 TBC1D2BQ9UPU7 963 aa15.74■□□□□ 0.11
PTCH1-207ENST00000429896 GPTP24298 496 aa15.74■□□□□ 0.11
PTCH1-207ENST00000429896 PPP1R42Q7Z4L9 355 aa15.74■□□□□ 0.11
PTCH1-207ENST00000429896 CCDC85AQ96PX6 553 aaPredicted RBP15.74■□□□□ 0.11
PTCH1-207ENST00000429896 FLIIQ13045 1269 aa15.73■□□□□ 0.11
PTCH1-207ENST00000429896 PHACTR3Q96KR7 559 aa15.73■□□□□ 0.11
PTCH1-207ENST00000429896 MSNP26038 577 aaKnown RBP15.73■□□□□ 0.11
PTCH1-207ENST00000429896 LNPKQ9C0E8 428 aa15.73■□□□□ 0.11
PTCH1-207ENST00000429896 RICTORQ6R327 1708 aa15.73■□□□□ 0.11
PTCH1-207ENST00000429896 RTCBQ9Y3I0 505 aaKnown RBP15.73■□□□□ 0.11
PTCH1-207ENST00000429896 PTPRCP08575 1304 aa15.73■□□□□ 0.11
PTCH1-207ENST00000429896 SRGAP3O43295 1099 aa15.73■□□□□ 0.11
PTCH1-207ENST00000429896 MAP3K2Q9Y2U5 619 aa15.73■□□□□ 0.11
PTCH1-207ENST00000429896 RARSP54136 660 aaKnown RBP15.72■□□□□ 0.11
PTCH1-207ENST00000429896 ST5P78524 1137 aa15.72■□□□□ 0.11
PTCH1-207ENST00000429896 CCNL1Q9UK58 526 aaPredicted RBP15.72■□□□□ 0.11
PTCH1-207ENST00000429896 RTL1A6NKG5 1358 aa15.72■□□□□ 0.11
PTCH1-207ENST00000429896 FOXD4L5Q5VV16 416 aaPredicted RBP15.72■□□□□ 0.11
PTCH1-207ENST00000429896 ARHGEF25Q86VW2 580 aa15.72■□□□□ 0.11
PTCH1-207ENST00000429896 FOXD4L4Q8WXT5 416 aaPredicted RBP15.72■□□□□ 0.11
PTCH1-207ENST00000429896 WASHC4Q2M389 1173 aa15.72■□□□□ 0.11
PTCH1-207ENST00000429896 NOC3LQ8WTT2 800 aaKnown RBP15.72■□□□□ 0.11
PTCH1-207ENST00000429896 INSRP06213 1382 aa15.72■□□□□ 0.11
PTCH1-207ENST00000429896 STK32BQ9NY57 414 aa15.72■□□□□ 0.11
PTCH1-207ENST00000429896 SLKQ9H2G2 1235 aaPredicted RBP15.72■□□□□ 0.11
PTCH1-207ENST00000429896 LAMC1P11047 1609 aa15.71■□□□□ 0.11
PTCH1-207ENST00000429896 GCC1Q96CN9 775 aa15.71■□□□□ 0.11
PTCH1-207ENST00000429896 UNC5CLQ8IV45 518 aa15.71■□□□□ 0.11
PTCH1-207ENST00000429896 DNAJC2Q99543 621 aaKnown RBP15.71■□□□□ 0.11
PTCH1-207ENST00000429896 FBXO3Q9UK99 471 aa15.71■□□□□ 0.11
PTCH1-207ENST00000429896 NEXMIFQ5QGS0 1516 aa15.71■□□□□ 0.1
PTCH1-207ENST00000429896 CWC25Q9NXE8 425 aaPredicted RBP15.71■□□□□ 0.1
PTCH1-207ENST00000429896 AATKQ6ZMQ8 1374 aa15.7■□□□□ 0.1
PTCH1-207ENST00000429896 CHPF2Q9P2E5 772 aa15.7■□□□□ 0.1
PTCH1-207ENST00000429896 CEP126Q9P2H0 1117 aa15.7■□□□□ 0.1
PTCH1-207ENST00000429896 CHAF1AQ13111 956 aaPredicted RBP15.7■□□□□ 0.1
PTCH1-207ENST00000429896 NBPF5PQ86XG9 351 aaPredicted RBP15.7■□□□□ 0.1
PTCH1-207ENST00000429896 TMEM57Q8N5G2 664 aa15.7■□□□□ 0.1
PTCH1-207ENST00000429896 CDC42BPGQ6DT37 1551 aa15.7■□□□□ 0.1
PTCH1-207ENST00000429896 TULP4Q9NRJ4 1543 aa15.7■□□□□ 0.1
PTCH1-207ENST00000429896 NRDCO43847 1150 aa15.7■□□□□ 0.1
PTCH1-207ENST00000429896 PRIM1P49642 420 aaKnown RBP15.7■□□□□ 0.1
PTCH1-207ENST00000429896 F6X3S4 739 aa15.7■□□□□ 0.1
PTCH1-207ENST00000429896 ANKRD13DQ6ZTN6 518 aa15.69■□□□□ 0.1
PTCH1-207ENST00000429896 CARD10Q9BWT7 1032 aa15.69■□□□□ 0.1
PTCH1-207ENST00000429896 APBA3O96018 575 aa15.69■□□□□ 0.1
PTCH1-207ENST00000429896 SETDB2Q96T68 719 aa15.69■□□□□ 0.1
PTCH1-207ENST00000429896 REREQ9P2R6 1566 aa15.69■□□□□ 0.1
PTCH1-207ENST00000429896 TNS3Q68CZ2 1445 aa15.69■□□□□ 0.1
PTCH1-207ENST00000429896 POLD1P28340 1107 aa15.69■□□□□ 0.1
PTCH1-207ENST00000429896 BAG6P46379 1132 aa15.69■□□□□ 0.1
PTCH1-207ENST00000429896 LRRCC1Q9C099 1032 aa15.69■□□□□ 0.1
PTCH1-207ENST00000429896 VPS53Q5VIR6 699 aa15.68■□□□□ 0.1
PTCH1-207ENST00000429896 CNTROBQ8N137 903 aa15.68■□□□□ 0.1
PTCH1-207ENST00000429896 FSD1Q9BTV5 496 aa15.68■□□□□ 0.1
PTCH1-207ENST00000429896 SLC52A2Q9HAB3 445 aa15.68■□□□□ 0.1
PTCH1-207ENST00000429896 SETBP1Q9Y6X0 1596 aa15.68■□□□□ 0.1
PTCH1-207ENST00000429896 TRPM1Q7Z4N2 1603 aa15.68■□□□□ 0.1
PTCH1-207ENST00000429896 ADAMTS13Q76LX8 1427 aa15.68■□□□□ 0.1
PTCH1-207ENST00000429896 XAGE3Q8WTP9 111 aa15.68■□□□□ 0.1
PTCH1-207ENST00000429896 IFIT5Q13325 482 aaKnown RBP15.68■□□□□ 0.1
PTCH1-207ENST00000429896 RPAP2Q8IXW5 612 aaPredicted RBP15.68■□□□□ 0.1
PTCH1-207ENST00000429896 DZIP3Q86Y13 1208 aaKnown RBP15.68■□□□□ 0.1
PTCH1-207ENST00000429896 C1orf167Q5SNV9 1468 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 WDR17Q8IZU2 1322 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 ATP5J2-PTCD1G3V325 749 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 GNPATO15228 680 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 ANXA1P04083 346 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 ANKRD18BA2A2Z9 1011 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 METTL24Q5JXM2 366 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 TRAPPC3LQ5T215 181 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 REC8O95072 547 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 ANKIB1Q9P2G1 1089 aa15.67■□□□□ 0.1
PTCH1-207ENST00000429896 PI4KAP2A4QPH2 592 aa15.66■□□□□ 0.1
PTCH1-207ENST00000429896 RAD21O60216 631 aa15.66■□□□□ 0.1
PTCH1-207ENST00000429896 COPS6Q7L5N1 327 aa15.66■□□□□ 0.1
PTCH1-207ENST00000429896 PI4KAP1Q8N8J0 262 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms