RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 EXOC6BQ9Y2D4 811 aa25.83■■□□□ 1.73
USP48-205ENST00000421625 CHL1O00533 1208 aa25.83■■□□□ 1.72
USP48-205ENST00000421625 ZNF830Q96NB3 372 aaPredicted RBP25.83■■□□□ 1.72
USP48-205ENST00000421625 AATKQ6ZMQ8 1374 aa25.82■■□□□ 1.72
USP48-205ENST00000421625 HMMRO75330 724 aa25.82■■□□□ 1.72
USP48-205ENST00000421625 SLC4A10Q6U841 1118 aa25.82■■□□□ 1.72
USP48-205ENST00000421625 SLC4A2P04920 1241 aa25.82■■□□□ 1.72
USP48-205ENST00000421625 MTERF4Q7Z6M4 381 aaKnown RBP25.82■■□□□ 1.72
USP48-205ENST00000421625 F6X3S4 739 aa25.81■■□□□ 1.72
USP48-205ENST00000421625 SYAP1Q96A49 352 aaPredicted RBP25.81■■□□□ 1.72
USP48-205ENST00000421625 CEBPAP49715 358 aaPredicted RBP25.81■■□□□ 1.72
USP48-205ENST00000421625 COG3Q96JB2 828 aa25.81■■□□□ 1.72
USP48-205ENST00000421625 ANO2Q9NQ90 1003 aa25.81■■□□□ 1.72
USP48-205ENST00000421625 A0A0U1RQG5 324 aaPredicted RBP25.8■■□□□ 1.72
USP48-205ENST00000421625 UPF3BQ9BZI7 483 aaKnown RBP25.8■■□□□ 1.72
USP48-205ENST00000421625 NCKAP5LQ9HCH0 1330 aa25.8■■□□□ 1.72
USP48-205ENST00000421625 A2ML1A8K2U0 1454 aa25.8■■□□□ 1.72
USP48-205ENST00000421625 USP48Q86UV5 1035 aa25.8■■□□□ 1.72
USP48-205ENST00000421625 DNTTIP2Q5QJE6 756 aaKnown RBP25.79■■□□□ 1.72
USP48-205ENST00000421625 SULT6B1Q6IMI4 303 aa25.79■■□□□ 1.72
USP48-205ENST00000421625 G2E3Q7L622 706 aa25.79■■□□□ 1.72
USP48-205ENST00000421625 INTS4Q96HW7 963 aaKnown RBP25.79■■□□□ 1.72
USP48-205ENST00000421625 HAP1P54257 671 aaPredicted RBP25.78■■□□□ 1.72
USP48-205ENST00000421625 TSC1Q92574 1164 aa25.78■■□□□ 1.72
USP48-205ENST00000421625 CPS1P31327 1500 aa25.78■■□□□ 1.72
USP48-205ENST00000421625 MCCP23508 829 aa25.78■■□□□ 1.72
USP48-205ENST00000421625 SALL3Q9BXA9 1300 aa25.78■■□□□ 1.72
USP48-205ENST00000421625 RILPL2Q969X0 211 aa25.78■■□□□ 1.72
USP48-205ENST00000421625 MIS18AQ9NYP9 233 aa25.78■■□□□ 1.72
USP48-205ENST00000421625 USP25Q9UHP3 1055 aa25.78■■□□□ 1.72
USP48-205ENST00000421625 KIAA0232Q92628 1395 aa25.77■■□□□ 1.72
USP48-205ENST00000421625 TPRNQ4KMQ1 711 aa25.77■■□□□ 1.72
USP48-205ENST00000421625 MYRIPQ8NFW9 859 aa25.77■■□□□ 1.72
USP48-205ENST00000421625 PRDM10Q9NQV6 1147 aa25.77■■□□□ 1.72
USP48-205ENST00000421625 CHMLP26374 656 aa25.76■■□□□ 1.71
USP48-205ENST00000421625 C17orf53Q8N3J3 647 aaPredicted RBP25.76■■□□□ 1.71
USP48-205ENST00000421625 SPATA31D1Q6ZQQ2 1576 aa25.75■■□□□ 1.71
USP48-205ENST00000421625 TRIM6-TRIM34B2RNG4 842 aa25.75■■□□□ 1.71
USP48-205ENST00000421625 PHF14O94880 888 aa25.75■■□□□ 1.71
USP48-205ENST00000421625 EIF4A2Q14240 407 aaKnown RBP25.75■■□□□ 1.71
USP48-205ENST00000421625 TCHHQ07283 1943 aa25.75■■□□□ 1.71
USP48-205ENST00000421625 MX1P20591 662 aa25.74■■□□□ 1.71
USP48-205ENST00000421625 SMAP1Q8IYB5 467 aaPredicted RBP25.74■■□□□ 1.71
USP48-205ENST00000421625 TUBGCP6Q96RT7 1819 aa25.74■■□□□ 1.71
USP48-205ENST00000421625 ANAPC15P60006 121 aa25.74■■□□□ 1.71
USP48-205ENST00000421625 TTC12Q9H892 705 aaPredicted RBP25.74■■□□□ 1.71
USP48-205ENST00000421625 UNC5CLQ8IV45 518 aa25.73■■□□□ 1.71
USP48-205ENST00000421625 PIBF1Q8WXW3 757 aa25.73■■□□□ 1.71
USP48-205ENST00000421625 WASLO00401 505 aaPredicted RBP25.73■■□□□ 1.71
USP48-205ENST00000421625 LRRCC1Q9C099 1032 aa25.72■■□□□ 1.71
USP48-205ENST00000421625 IL25Q9H293 177 aa25.72■■□□□ 1.71
USP48-205ENST00000421625 NOLC1Q14978 699 aaKnown RBP eCLIP25.72■■□□□ 1.71
USP48-205ENST00000421625 SRCIN1Q9C0H9 1055 aa25.72■■□□□ 1.71
USP48-205ENST00000421625 CCDC94Q9BW85 323 aaPredicted RBP25.71■■□□□ 1.71
USP48-205ENST00000421625 WDR33Q9C0J8 1336 aaKnown RBP25.71■■□□□ 1.71
USP48-205ENST00000421625 DLC1Q96QB1 1528 aa25.71■■□□□ 1.71
USP48-205ENST00000421625 ADCY5O95622 1261 aa25.71■■□□□ 1.71
USP48-205ENST00000421625 GNAI2P04899 355 aa25.71■■□□□ 1.71
USP48-205ENST00000421625 ZNF710Q8N1W2 664 aa25.71■■□□□ 1.71
USP48-205ENST00000421625 PNMA6EA0A0J9YXQ4 647 aa25.7■■□□□ 1.7
USP48-205ENST00000421625 HCLS1P14317 486 aaPredicted RBP25.7■■□□□ 1.7
USP48-205ENST00000421625 FAM184AQ8NB25 1140 aa25.7■■□□□ 1.7
USP48-205ENST00000421625 CNPY2Q9Y2B0 182 aa25.7■■□□□ 1.7
USP48-205ENST00000421625 RPAP1Q9BWH6 1393 aaPredicted RBP25.7■■□□□ 1.7
USP48-205ENST00000421625 CCT4P50991 539 aaKnown RBP25.69■■□□□ 1.7
USP48-205ENST00000421625 UVSSAQ2YD98 709 aa25.69■■□□□ 1.7
USP48-205ENST00000421625 NUDT16Q96DE0 195 aaKnown RBP25.69■■□□□ 1.7
USP48-205ENST00000421625 TNRQ92752 1358 aa25.69■■□□□ 1.7
USP48-205ENST00000421625 FAM177BA6PVY3 158 aa25.69■■□□□ 1.7
USP48-205ENST00000421625 CCDC183Q5T5S1 534 aa25.68■■□□□ 1.7
USP48-205ENST00000421625 CRB1P82279 1406 aa25.68■■□□□ 1.7
USP48-205ENST00000421625 PRIMPOLQ96LW4 560 aa25.67■■□□□ 1.7
USP48-205ENST00000421625 TXNDC2Q86VQ3 553 aa25.67■■□□□ 1.7
USP48-205ENST00000421625 SSH2Q76I76 1423 aa25.67■■□□□ 1.7
USP48-205ENST00000421625 NRKQ7Z2Y5 1582 aa25.66■■□□□ 1.7
USP48-205ENST00000421625 METP08581 1390 aa25.65■■□□□ 1.7
USP48-205ENST00000421625 TMEM87AQ8NBN3 555 aa25.65■■□□□ 1.7
USP48-205ENST00000421625 IL17RAQ96F46 866 aa25.65■■□□□ 1.7
USP48-205ENST00000421625 FOXO3O43524 673 aa25.65■■□□□ 1.7
USP48-205ENST00000421625 LARP6Q9BRS8 491 aaKnown RBP25.64■■□□□ 1.7
USP48-205ENST00000421625 MON2Q7Z3U7 1717 aa25.64■■□□□ 1.7
USP48-205ENST00000421625 TSPYL4Q9UJ04 414 aa25.64■■□□□ 1.7
USP48-205ENST00000421625 HMGN5P82970 282 aaKnown RBP25.63■■□□□ 1.69
USP48-205ENST00000421625 GTF2F1P35269 517 aaKnown RBP eCLIP25.63■■□□□ 1.69
USP48-205ENST00000421625 STAP2Q9UGK3 403 aa25.63■■□□□ 1.69
USP48-205ENST00000421625 HSPA4P34932 840 aa25.62■■□□□ 1.69
USP48-205ENST00000421625 CCDC61Q9Y6R9 512 aa25.62■■□□□ 1.69
USP48-205ENST00000421625 C3P01024 1663 aa25.62■■□□□ 1.69
USP48-205ENST00000421625 PLCB2Q00722 1185 aa25.62■■□□□ 1.69
USP48-205ENST00000421625 HSP90AB2PQ58FF8 381 aa25.62■■□□□ 1.69
USP48-205ENST00000421625 SETD1AO15047 1707 aaKnown RBP25.62■■□□□ 1.69
USP48-205ENST00000421625 MAP4K4O95819 1239 aaPredicted RBP25.61■■□□□ 1.69
USP48-205ENST00000421625 ATP8B2P98198 1209 aa25.61■■□□□ 1.69
USP48-205ENST00000421625 SPTLC3Q9NUV7 552 aa25.61■■□□□ 1.69
USP48-205ENST00000421625 ZHX1Q9UKY1 873 aaPredicted RBP25.61■■□□□ 1.69
USP48-205ENST00000421625 ZSCAN22P10073 491 aaPredicted RBP25.61■■□□□ 1.69
USP48-205ENST00000421625 FKBP5Q13451 457 aaPredicted RBP25.61■■□□□ 1.69
USP48-205ENST00000421625 IL1RAPL2Q9NP60 686 aa25.61■■□□□ 1.69
USP48-205ENST00000421625 KDM4AO75164 1064 aa25.6■■□□□ 1.69
USP48-205ENST00000421625 FIBPO43427 364 aa25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms