RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 MSL1Q68DK7 614 aa34.34■■■■□ 3.09
VEGFA-208ENST00000417285 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP34.33■■■■□ 3.09
VEGFA-208ENST00000417285 ITPK1Q13572 414 aa34.33■■■■□ 3.09
VEGFA-208ENST00000417285 CC2D1BQ5T0F9 858 aaKnown RBP34.33■■■■□ 3.09
VEGFA-208ENST00000417285 C4BP0C0L5 1744 aa34.32■■■■□ 3.08
VEGFA-208ENST00000417285 TAF1LQ8IZX4 1826 aa34.32■■■■□ 3.08
VEGFA-208ENST00000417285 PHF14O94880 888 aa34.3■■■■□ 3.08
VEGFA-208ENST00000417285 NPC1L1Q9UHC9 1359 aa34.3■■■■□ 3.08
VEGFA-208ENST00000417285 AMIGO3Q86WK7 504 aa34.28■■■■□ 3.08
VEGFA-208ENST00000417285 RBM42Q9BTD8 480 aaKnown RBP34.28■■■■□ 3.08
VEGFA-208ENST00000417285 CD2APQ9Y5K6 639 aa34.28■■■■□ 3.08
VEGFA-208ENST00000417285 GNPATO15228 680 aa34.27■■■■□ 3.08
VEGFA-208ENST00000417285 DIAPH1O60610 1272 aaKnown RBP34.27■■■■□ 3.08
VEGFA-208ENST00000417285 NFATC2IPQ8NCF5 419 aa34.26■■■■□ 3.08
VEGFA-208ENST00000417285 NLGN2Q8NFZ4 835 aa34.26■■■■□ 3.08
VEGFA-208ENST00000417285 KDM6AO15550 1401 aaPredicted RBP34.26■■■■□ 3.07
VEGFA-208ENST00000417285 AKAP4Q5JQC9 854 aa34.25■■■■□ 3.07
VEGFA-208ENST00000417285 RC3H1Q5TC82 1133 aaKnown RBP34.25■■■■□ 3.07
VEGFA-208ENST00000417285 UTRNP46939 3433 aa34.23■■■■□ 3.07
VEGFA-208ENST00000417285 SLC4A9Q96Q91 983 aa34.23■■■■□ 3.07
VEGFA-208ENST00000417285 SMIM5Q71RC9 77 aa34.22■■■■□ 3.07
VEGFA-208ENST00000417285 PELP1Q8IZL8 1130 aaKnown RBP34.22■■■■□ 3.07
VEGFA-208ENST00000417285 RTCBQ9Y3I0 505 aaKnown RBP34.22■■■■□ 3.07
VEGFA-208ENST00000417285 TRAPPC3LQ5T215 181 aa34.21■■■■□ 3.07
VEGFA-208ENST00000417285 HMOX1P09601 288 aa34.2■■■■□ 3.07
VEGFA-208ENST00000417285 GRIN3BO60391 1043 aa34.19■■■■□ 3.06
VEGFA-208ENST00000417285 ADRA2BP18089 450 aa34.18■■■■□ 3.06
VEGFA-208ENST00000417285 UBR3Q6ZT12 1888 aa34.18■■■■□ 3.06
VEGFA-208ENST00000417285 CNTNAP4Q9C0A0 1308 aa34.16■■■■□ 3.06
VEGFA-208ENST00000417285 PTCD1O75127 700 aaKnown RBP34.16■■■■□ 3.06
VEGFA-208ENST00000417285 RPS6KA4O75676 772 aa34.15■■■■□ 3.06
VEGFA-208ENST00000417285 NLGN1Q8N2Q7 840 aa34.14■■■■□ 3.06
VEGFA-208ENST00000417285 ZNF784Q8NCA9 323 aaPredicted RBP34.14■■■■□ 3.06
VEGFA-208ENST00000417285 SLC52A2Q9HAB3 445 aa34.14■■■■□ 3.06
VEGFA-208ENST00000417285 ZNF831Q5JPB2 1677 aa34.14■■■■□ 3.06
VEGFA-208ENST00000417285 CNGB1Q14028 1251 aaPredicted RBP34.13■■■■□ 3.05
VEGFA-208ENST00000417285 LGR6Q9HBX8 967 aa34.13■■■■□ 3.05
VEGFA-208ENST00000417285 MTHFSDQ2M296 383 aaKnown RBP34.12■■■■□ 3.05
VEGFA-208ENST00000417285 ARHGEF1Q92888 912 aaKnown RBP34.12■■■■□ 3.05
VEGFA-208ENST00000417285 GOLGB1Q14789 3259 aaKnown RBP34.12■■■■□ 3.05
VEGFA-208ENST00000417285 RNMTO43148 476 aaKnown RBP34.11■■■■□ 3.05
VEGFA-208ENST00000417285 RFC4P35249 363 aa34.1■■■■□ 3.05
VEGFA-208ENST00000417285 YBX3P16989 372 aaKnown RBP eCLIP34.09■■■■□ 3.05
VEGFA-208ENST00000417285 U2SURPO15042 1029 aaKnown RBP34.08■■■■□ 3.05
VEGFA-208ENST00000417285 CHD4Q14839 1912 aa34.08■■■■□ 3.05
VEGFA-208ENST00000417285 MMP10P09238 476 aa34.07■■■■□ 3.04
VEGFA-208ENST00000417285 CFAP53Q96M91 514 aa34.07■■■■□ 3.04
VEGFA-208ENST00000417285 CRKLP46109 303 aaKnown RBP34.06■■■■□ 3.04
VEGFA-208ENST00000417285 GAS2L2Q8NHY3 880 aa34.02■■■■□ 3.04
VEGFA-208ENST00000417285 SCN11AQ9UI33 1791 aa34.01■■■■□ 3.04
VEGFA-208ENST00000417285 GYS1P13807 737 aa34.01■■■■□ 3.03
VEGFA-208ENST00000417285 COL3A1P02461 1466 aaPredicted RBP34.01■■■■□ 3.03
VEGFA-208ENST00000417285 NUDCQ9Y266 331 aa34■■■■□ 3.03
VEGFA-208ENST00000417285 GNAT3A8MTJ3 354 aa33.98■■■■□ 3.03
VEGFA-208ENST00000417285 SLC39A6Q13433 755 aa33.98■■■■□ 3.03
VEGFA-208ENST00000417285 INTS5Q6P9B9 1019 aaKnown RBP33.98■■■■□ 3.03
VEGFA-208ENST00000417285 COL5A3P25940 1745 aaPredicted RBP33.97■■■■□ 3.03
VEGFA-208ENST00000417285 DNAJC10Q8IXB1 793 aa33.97■■■■□ 3.03
VEGFA-208ENST00000417285 VSIG10Q8N0Z9 540 aa33.97■■■■□ 3.03
VEGFA-208ENST00000417285 TGFB2P61812 414 aa33.96■■■■□ 3.03
VEGFA-208ENST00000417285 CCDC87Q9NVE4 849 aa33.96■■■■□ 3.03
VEGFA-208ENST00000417285 PARP3Q9Y6F1 533 aa33.96■■■■□ 3.03
VEGFA-208ENST00000417285 MRC1P22897 1456 aa33.95■■■■□ 3.03
VEGFA-208ENST00000417285 PPP2R1AP30153 589 aa33.94■■■■□ 3.02
VEGFA-208ENST00000417285 CYP19A1P11511 503 aaPredicted RBP33.93■■■■□ 3.02
VEGFA-208ENST00000417285 MYH14Q7Z406 1995 aaKnown RBP33.92■■■■□ 3.02
VEGFA-208ENST00000417285 TEFQ10587 303 aa33.92■■■■□ 3.02
VEGFA-208ENST00000417285 TTC5Q8N0Z6 440 aa33.92■■■■□ 3.02
VEGFA-208ENST00000417285 IL17REQ8NFR9 667 aa33.92■■■■□ 3.02
VEGFA-208ENST00000417285 USP42Q9H9J4 1324 aaKnown RBP33.91■■■■□ 3.02
VEGFA-208ENST00000417285 ZPR1O75312 459 aa33.89■■■■□ 3.02
VEGFA-208ENST00000417285 RSPH6AQ9H0K4 717 aa33.89■■■■□ 3.02
VEGFA-208ENST00000417285 SRP68Q9UHB9 627 aaKnown RBP33.89■■■■□ 3.02
VEGFA-208ENST00000417285 CICQ96RK0 1608 aaPredicted RBP33.89■■■■□ 3.02
VEGFA-208ENST00000417285 ADAMTS7Q9UKP4 1686 aa33.88■■■■□ 3.01
VEGFA-208ENST00000417285 PRKAR2BP31323 418 aa33.88■■■■□ 3.01
VEGFA-208ENST00000417285 PHACTR3Q96KR7 559 aa33.88■■■■□ 3.01
VEGFA-208ENST00000417285 FCHSD2O94868 740 aa33.87■■■■□ 3.01
VEGFA-208ENST00000417285 STARD3NLO95772 234 aa33.87■■■■□ 3.01
VEGFA-208ENST00000417285 U2AF1L5P0DN76 240 aaPredicted RBP33.87■■■■□ 3.01
VEGFA-208ENST00000417285 U2AF1Q01081 240 aaKnown RBP eCLIP33.87■■■■□ 3.012e-10■□□□□ 9.4
VEGFA-208ENST00000417285 SOS1Q07889 1333 aaPredicted RBP33.86■■■■□ 3.01
VEGFA-208ENST00000417285 FKBP8Q14318 412 aa33.86■■■■□ 3.01
VEGFA-208ENST00000417285 TEX13AQ9BXU3 409 aaPredicted RBP33.86■■■■□ 3.01
VEGFA-208ENST00000417285 ZNF790Q6PG37 636 aa33.85■■■■□ 3.01
VEGFA-208ENST00000417285 TJP1Q07157 1748 aa33.84■■■■□ 3.01
VEGFA-208ENST00000417285 A0A0G2JLW4 131 aa33.84■■■■□ 3.01
VEGFA-208ENST00000417285 KCPQ6ZWJ8 1503 aa33.84■■■■□ 3.01
VEGFA-208ENST00000417285 C10orf71Q711Q0 1435 aa33.83■■■■□ 3.01
VEGFA-208ENST00000417285 WWC3Q9ULE0 1092 aa33.83■■■■□ 3.01
VEGFA-208ENST00000417285 TM4SF1P30408 202 aa33.82■■■■□ 3
VEGFA-208ENST00000417285 NARFQ9UHQ1 456 aa33.82■■■■□ 3
VEGFA-208ENST00000417285 USPL1Q5W0Q7 1092 aa33.81■■■■□ 3
VEGFA-208ENST00000417285 PXDNLA1KZ92 1463 aa33.81■■■■□ 3
VEGFA-208ENST00000417285 ZNF496Q96IT1 587 aaPredicted RBP33.8■■■■□ 3
VEGFA-208ENST00000417285 ZBTB1Q9Y2K1 713 aa33.8■■■■□ 3
VEGFA-208ENST00000417285 CEMIPQ8WUJ3 1361 aa33.8■■■■□ 3
VEGFA-208ENST00000417285 DPEP1P16444 411 aa33.79■■■■□ 3
VEGFA-208ENST00000417285 C4AP0C0L4 1744 aa33.79■■■■□ 3
VEGFA-208ENST00000417285 GIGYF1O75420 1035 aaPredicted RBP33.78■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms