RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 CNTROBQ8N137 903 aa11.08□□□□□ -0.64
LIG4-202ENST00000405925 CEP126Q9P2H0 1117 aa11.08□□□□□ -0.64
LIG4-202ENST00000405925 PPP1R1BQ9UD71 204 aaPredicted RBP11.08□□□□□ -0.64
LIG4-202ENST00000405925 ZNF652Q9Y2D9 606 aa11.08□□□□□ -0.64
LIG4-202ENST00000405925 NOL10Q9BSC4 688 aaKnown RBP11.08□□□□□ -0.64
LIG4-202ENST00000405925 TRIM35Q9UPQ4 493 aa11.08□□□□□ -0.64
LIG4-202ENST00000405925 ZPR1O75312 459 aa11.07□□□□□ -0.64
LIG4-202ENST00000405925 COPS6Q7L5N1 327 aa11.07□□□□□ -0.64
LIG4-202ENST00000405925 XAGE3Q8WTP9 111 aa11.07□□□□□ -0.64
LIG4-202ENST00000405925 LGR6Q9HBX8 967 aa11.07□□□□□ -0.64
LIG4-202ENST00000405925 AACSQ86V21 672 aa11.07□□□□□ -0.64
LIG4-202ENST00000405925 TNNQ9UQP3 1299 aa11.07□□□□□ -0.64
LIG4-202ENST00000405925 TRPM1Q7Z4N2 1603 aa11.06□□□□□ -0.64
LIG4-202ENST00000405925 ANKRD13DQ6ZTN6 518 aa11.06□□□□□ -0.64
LIG4-202ENST00000405925 C22orf23Q9BZE7 217 aa11.06□□□□□ -0.64
LIG4-202ENST00000405925 TRMT112Q9UI30 125 aaKnown RBP11.06□□□□□ -0.64
LIG4-202ENST00000405925 PCDH11XQ9BZA7 1347 aa11.06□□□□□ -0.64
LIG4-202ENST00000405925 PCDH11YQ9BZA8 1340 aa11.06□□□□□ -0.64
LIG4-202ENST00000405925 UBE3BQ7Z3V4 1068 aa11.06□□□□□ -0.64
LIG4-202ENST00000405925 JARID2Q92833 1246 aaPredicted RBP11.06□□□□□ -0.64
LIG4-202ENST00000405925 ARHGEF25Q86VW2 580 aa11.06□□□□□ -0.64
LIG4-202ENST00000405925 MEIS3Q99687 375 aa11.05□□□□□ -0.64
LIG4-202ENST00000405925 MRPL50Q8N5N7 158 aaKnown RBP11.05□□□□□ -0.64
LIG4-202ENST00000405925 KIAA0232Q92628 1395 aa11.05□□□□□ -0.64
LIG4-202ENST00000405925 SMARCA5O60264 1052 aaPredicted RBP11.05□□□□□ -0.64
LIG4-202ENST00000405925 MAP4K4O95819 1239 aaPredicted RBP11.05□□□□□ -0.64
LIG4-202ENST00000405925 HSP90AB3PQ58FF7 597 aa11.05□□□□□ -0.64
LIG4-202ENST00000405925 CCDC158Q5M9N0 1113 aa11.05□□□□□ -0.64
LIG4-202ENST00000405925 RNF20Q5VTR2 975 aa11.05□□□□□ -0.64
LIG4-202ENST00000405925 MADDQ8WXG6 1647 aa11.05□□□□□ -0.64
LIG4-202ENST00000405925 INSRP06213 1382 aa11.05□□□□□ -0.64
LIG4-202ENST00000405925 FOXD4L5Q5VV16 416 aaPredicted RBP11.04□□□□□ -0.64
LIG4-202ENST00000405925 FOXD4L4Q8WXT5 416 aaPredicted RBP11.04□□□□□ -0.64
LIG4-202ENST00000405925 ARHGAP45Q92619 1136 aa11.04□□□□□ -0.64
LIG4-202ENST00000405925 ATP6V1AP38606 617 aa11.04□□□□□ -0.64
LIG4-202ENST00000405925 BRINP3Q76B58 766 aa11.04□□□□□ -0.64
LIG4-202ENST00000405925 NUTM1Q86Y26 1132 aa11.04□□□□□ -0.64
LIG4-202ENST00000405925 GBP4Q96PP9 640 aa11.04□□□□□ -0.64
LIG4-202ENST00000405925 TBC1D2BQ9UPU7 963 aa11.04□□□□□ -0.64
LIG4-202ENST00000405925 AATKQ6ZMQ8 1374 aa11.04□□□□□ -0.64
LIG4-202ENST00000405925 FAM98CQ17RN3 349 aaKnown RBP11.04□□□□□ -0.64
LIG4-202ENST00000405925 TTC39AQ5SRH9 613 aa11.04□□□□□ -0.64
LIG4-202ENST00000405925 KIF1BPQ96EK5 621 aa11.04□□□□□ -0.64
LIG4-202ENST00000405925 RLBP1P12271 317 aa11.03□□□□□ -0.64
LIG4-202ENST00000405925 ZNF790Q6PG37 636 aa11.03□□□□□ -0.64
LIG4-202ENST00000405925 AK7Q96M32 723 aa11.03□□□□□ -0.64
LIG4-202ENST00000405925 CHL1O00533 1208 aa11.03□□□□□ -0.64
LIG4-202ENST00000405925 PHF14O94880 888 aa11.03□□□□□ -0.64
LIG4-202ENST00000405925 TRDNQ13061 729 aa11.03□□□□□ -0.64
LIG4-202ENST00000405925 IGHMBP2P38935 993 aaKnown RBP11.03□□□□□ -0.64
LIG4-202ENST00000405925 CWC25Q9NXE8 425 aaPredicted RBP11.03□□□□□ -0.64
LIG4-202ENST00000405925 ZMYM4Q5VZL5 1548 aa11.02□□□□□ -0.64
LIG4-202ENST00000405925 FKBP4Q02790 459 aaKnown RBP eCLIP11.02□□□□□ -0.64
LIG4-202ENST00000405925 METTL24Q5JXM2 366 aa11.02□□□□□ -0.64
LIG4-202ENST00000405925 SMARCC1Q92922 1105 aaPredicted RBP11.02□□□□□ -0.64
LIG4-202ENST00000405925 ADGRL3Q9HAR2 1447 aa11.02□□□□□ -0.65
LIG4-202ENST00000405925 IFIT5Q13325 482 aaKnown RBP11.02□□□□□ -0.65
LIG4-202ENST00000405925 PLCB2Q00722 1185 aa11.02□□□□□ -0.65
LIG4-202ENST00000405925 PPP1R42Q7Z4L9 355 aa11.02□□□□□ -0.65
LIG4-202ENST00000405925 AMOTL1Q8IY63 956 aa11.02□□□□□ -0.65
LIG4-202ENST00000405925 FRMPD1Q5SYB0 1578 aa11.02□□□□□ -0.65
LIG4-202ENST00000405925 KSR2Q6VAB6 950 aa11.01□□□□□ -0.65
LIG4-202ENST00000405925 PCDHB15Q9Y5E8 787 aa11.01□□□□□ -0.65
LIG4-202ENST00000405925 PTPRMP28827 1452 aa11.01□□□□□ -0.65
LIG4-202ENST00000405925 CDCA7Q9BWT1 371 aaPredicted RBP11.01□□□□□ -0.65
LIG4-202ENST00000405925 BCL11BQ9C0K0 894 aaPredicted RBP11.01□□□□□ -0.65
LIG4-202ENST00000405925 PHAXQ9H814 394 aaKnown RBP11.01□□□□□ -0.65
LIG4-202ENST00000405925 G2E3Q7L622 706 aa11.01□□□□□ -0.65
LIG4-202ENST00000405925 USP21Q9UK80 565 aa11.01□□□□□ -0.65
LIG4-202ENST00000405925 ANKARQ7Z5J8 1434 aa11□□□□□ -0.65
LIG4-202ENST00000405925 HMGB2P26583 209 aaKnown RBP11□□□□□ -0.65
LIG4-202ENST00000405925 GNL3LQ9NVN8 582 aaKnown RBP11□□□□□ -0.65
LIG4-202ENST00000405925 NEXMIFQ5QGS0 1516 aa11□□□□□ -0.65
LIG4-202ENST00000405925 TULP1O00294 542 aaPredicted RBP11□□□□□ -0.65
LIG4-202ENST00000405925 IGHDP01880 384 aa11□□□□□ -0.65
LIG4-202ENST00000405925 PRIM1P49642 420 aaKnown RBP11□□□□□ -0.65
LIG4-202ENST00000405925 FOXD4L6Q3SYB3 417 aaPredicted RBP11□□□□□ -0.65
LIG4-202ENST00000405925 FOXD4L3Q6VB84 417 aaPredicted RBP11□□□□□ -0.65
LIG4-202ENST00000405925 RALYLQ86SE5 291 aaKnown RBP11□□□□□ -0.65
LIG4-202ENST00000405925 IL17REQ8NFR9 667 aa11□□□□□ -0.65
LIG4-202ENST00000405925 KIF3AQ9Y496 699 aa11□□□□□ -0.65
LIG4-202ENST00000405925 BLMP54132 1417 aaPredicted RBP11□□□□□ -0.65
LIG4-202ENST00000405925 PIK3C2BO00750 1634 aa11□□□□□ -0.65
LIG4-202ENST00000405925 CCDC8Q9H0W5 538 aaPredicted RBP11□□□□□ -0.65
LIG4-202ENST00000405925 SLC52A2Q9HAB3 445 aa11□□□□□ -0.65
LIG4-202ENST00000405925 ADAMTS13Q76LX8 1427 aa11□□□□□ -0.65
LIG4-202ENST00000405925 MX1P20591 662 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 FAM184AQ8NB25 1140 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 BCORL1Q5H9F3 1711 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 RFC4P35249 363 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 CWF19L2Q2TBE0 894 aaKnown RBP10.99□□□□□ -0.65
LIG4-202ENST00000405925 SYNE3Q6ZMZ3 975 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 ZNF496Q96IT1 587 aaPredicted RBP10.99□□□□□ -0.65
LIG4-202ENST00000405925 DDX21Q9NR30 783 aaKnown RBP eCLIP10.99□□□□□ -0.65
LIG4-202ENST00000405925 ERBB3P21860 1342 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 IGSF1Q8N6C5 1336 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 HIP1O00291 1037 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 RAB11FIP3O75154 756 aa10.99□□□□□ -0.65
LIG4-202ENST00000405925 CPLX2Q6PUV4 134 aaKnown RBP10.99□□□□□ -0.65
LIG4-202ENST00000405925 LINS1Q8NG48 757 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms