RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TCEANC2Q96MN5 208 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 SYNMO15061 1565 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 SPHKAPQ2M3C7 1700 aa14.31□□□□□ -0.12
HMGB1-206ENST00000405805 CCDC83Q8IWF9 413 aa14.3□□□□□ -0.12
HMGB1-206ENST00000405805 DCTPP1Q9H773 170 aa14.3□□□□□ -0.12
HMGB1-206ENST00000405805 POLR1AO95602 1720 aaPredicted RBP14.3□□□□□ -0.12
HMGB1-206ENST00000405805 KDM4AO75164 1064 aa14.3□□□□□ -0.12
HMGB1-206ENST00000405805 PDE1AP54750 535 aa14.3□□□□□ -0.12
HMGB1-206ENST00000405805 CEP85Q6P2H3 762 aa14.3□□□□□ -0.12
HMGB1-206ENST00000405805 PPIP5K1Q6PFW1 1433 aa14.3□□□□□ -0.12
HMGB1-206ENST00000405805 HCLS1P14317 486 aaPredicted RBP14.3□□□□□ -0.12
HMGB1-206ENST00000405805 ANKRD44Q8N8A2 993 aa14.3□□□□□ -0.12
HMGB1-206ENST00000405805 TSC1Q92574 1164 aa14.3□□□□□ -0.12
HMGB1-206ENST00000405805 CCDC30Q5VVM6 783 aa14.3□□□□□ -0.12
HMGB1-206ENST00000405805 C17orf53Q8N3J3 647 aaPredicted RBP14.3□□□□□ -0.12
HMGB1-206ENST00000405805 ZKSCAN1P17029 563 aaPredicted RBP14.29□□□□□ -0.12
HMGB1-206ENST00000405805 TTC12Q9H892 705 aaPredicted RBP14.29□□□□□ -0.12
HMGB1-206ENST00000405805 PUS7Q96PZ0 661 aaKnown RBP14.29□□□□□ -0.12
HMGB1-206ENST00000405805 RNF17Q9BXT8 1623 aaKnown RBP14.29□□□□□ -0.12
HMGB1-206ENST00000405805 ZMYM3Q14202 1370 aa14.28□□□□□ -0.12
HMGB1-206ENST00000405805 MAP3K4Q9Y6R4 1608 aa14.28□□□□□ -0.12
HMGB1-206ENST00000405805 H3BQV1 296 aa14.28□□□□□ -0.12
HMGB1-206ENST00000405805 CCT4P50991 539 aaKnown RBP14.28□□□□□ -0.12
HMGB1-206ENST00000405805 IFFO2Q5TF58 517 aa14.28□□□□□ -0.12
HMGB1-206ENST00000405805 PDCL2Q8N4E4 241 aa14.28□□□□□ -0.12
HMGB1-206ENST00000405805 JAKMIP1Q96N16 626 aaKnown RBP14.28□□□□□ -0.12
HMGB1-206ENST00000405805 CASTP20810 708 aaKnown RBP14.28□□□□□ -0.12
HMGB1-206ENST00000405805 ESCO1Q5FWF5 840 aa14.28□□□□□ -0.12
HMGB1-206ENST00000405805 KIF1BO60333 1816 aa14.28□□□□□ -0.12
HMGB1-206ENST00000405805 GPATCH3Q96I76 525 aa14.27□□□□□ -0.12
HMGB1-206ENST00000405805 ATP6V1DQ9Y5K8 247 aa14.27□□□□□ -0.12
HMGB1-206ENST00000405805 GIMAP6Q6P9H5 292 aa14.27□□□□□ -0.12
HMGB1-206ENST00000405805 GOLGA6L1Q8N7Z2 621 aa14.27□□□□□ -0.12
HMGB1-206ENST00000405805 SKIDA1Q1XH10 827 aa14.27□□□□□ -0.13
HMGB1-206ENST00000405805 THEMISQ8N1K5 641 aaPredicted RBP14.27□□□□□ -0.13
HMGB1-206ENST00000405805 CLASRPQ8N2M8 674 aaKnown RBP14.27□□□□□ -0.13
HMGB1-206ENST00000405805 ABCC3O15438 1527 aa14.27□□□□□ -0.13
HMGB1-206ENST00000405805 FLIIQ13045 1269 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 EIF4A2Q14240 407 aaKnown RBP14.26□□□□□ -0.13
HMGB1-206ENST00000405805 ARHGAP45Q92619 1136 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 NEO1Q92859 1461 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 ARAP3Q8WWN8 1544 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 TMEM63CQ9P1W3 806 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 TFIP11Q9UBB9 837 aaKnown RBP14.26□□□□□ -0.13
HMGB1-206ENST00000405805 CSB-PGBD3P0DP91 1061 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 PRPF40BQ6NWY9 871 aaKnown RBP14.26□□□□□ -0.13
HMGB1-206ENST00000405805 KLHL34Q8N239 644 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 CNPY2Q9Y2B0 182 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 WDR33Q9C0J8 1336 aaKnown RBP14.26□□□□□ -0.13
HMGB1-206ENST00000405805 ABCA6Q8N139 1617 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 CNTROBQ8N137 903 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 FAM184AQ8NB25 1140 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 LMBRD1Q9NUN5 540 aa14.26□□□□□ -0.13
HMGB1-206ENST00000405805 CKAP2LQ8IYA6 745 aa14.25□□□□□ -0.13
HMGB1-206ENST00000405805 NECAB1Q8N987 351 aa14.25□□□□□ -0.13
HMGB1-206ENST00000405805 TRIM5Q9C035 493 aa14.25□□□□□ -0.13
HMGB1-206ENST00000405805 TNRQ92752 1358 aa14.25□□□□□ -0.13
HMGB1-206ENST00000405805 TTC21BQ7Z4L5 1316 aa14.25□□□□□ -0.13
HMGB1-206ENST00000405805 TAF7Q15545 349 aaPredicted RBP14.25□□□□□ -0.13
HMGB1-206ENST00000405805 ABCA9Q8IUA7 1624 aa14.25□□□□□ -0.13
HMGB1-206ENST00000405805 USP48Q86UV5 1035 aa14.25□□□□□ -0.13
HMGB1-206ENST00000405805 SRCIN1Q9C0H9 1055 aa14.25□□□□□ -0.13
HMGB1-206ENST00000405805 MCM2P49736 904 aa14.24□□□□□ -0.13
HMGB1-206ENST00000405805 TAF3Q5VWG9 929 aa14.24□□□□□ -0.13
HMGB1-206ENST00000405805 METP08581 1390 aa14.24□□□□□ -0.13
HMGB1-206ENST00000405805 BECN2A8MW95 431 aa14.24□□□□□ -0.13
HMGB1-206ENST00000405805 GADD45BO75293 160 aaPredicted RBP14.24□□□□□ -0.13
HMGB1-206ENST00000405805 FMNL2Q96PY5 1086 aa14.24□□□□□ -0.13
HMGB1-206ENST00000405805 FSD1Q9BTV5 496 aa14.24□□□□□ -0.13
HMGB1-206ENST00000405805 NSFL1CQ9UNZ2 370 aaKnown RBP14.24□□□□□ -0.13
HMGB1-206ENST00000405805 G3BP1Q13283 466 aaKnown RBP eCLIP14.24□□□□□ -0.13
HMGB1-206ENST00000405805 LARP1BQ659C4 914 aaKnown RBP14.24□□□□□ -0.13
HMGB1-206ENST00000405805 LRSAM1Q6UWE0 723 aa14.24□□□□□ -0.13
HMGB1-206ENST00000405805 RUFY2Q8WXA3 655 aa14.24□□□□□ -0.13
HMGB1-206ENST00000405805 JARID2Q92833 1246 aaPredicted RBP14.24□□□□□ -0.13
HMGB1-206ENST00000405805 PALD1Q9ULE6 856 aa14.24□□□□□ -0.13
HMGB1-206ENST00000405805 LTKP29376 864 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 IPO4Q8TEX9 1081 aaKnown RBP14.23□□□□□ -0.13
HMGB1-206ENST00000405805 DDX11Q96FC9 970 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 PPP6R1Q9UPN7 881 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.23□□□□□ -0.13
HMGB1-206ENST00000405805 CEP152O94986 1710 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 PPRC1Q5VV67 1664 aaKnown RBP14.23□□□□□ -0.13
HMGB1-206ENST00000405805 ESYT1Q9BSJ8 1104 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 HECW2Q9P2P5 1572 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 GOLGA6L19H0YKK7 550 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 ADCY5O95622 1261 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 IL13P35225 146 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 PPP1R42Q7Z4L9 355 aa14.23□□□□□ -0.13
HMGB1-206ENST00000405805 SMAP1Q8IYB5 467 aaPredicted RBP14.23□□□□□ -0.13
HMGB1-206ENST00000405805 PHF23Q9BUL5 403 aaPredicted RBP14.23□□□□□ -0.13
HMGB1-206ENST00000405805 MSH6P52701 1360 aa14.22□□□□□ -0.13
HMGB1-206ENST00000405805 PNMA6EA0A0J9YXQ4 647 aa14.22□□□□□ -0.13
HMGB1-206ENST00000405805 HMGN5P82970 282 aaKnown RBP14.22□□□□□ -0.13
HMGB1-206ENST00000405805 FAM173BQ6P4H8 233 aa14.22□□□□□ -0.13
HMGB1-206ENST00000405805 CCDC8Q9H0W5 538 aaPredicted RBP14.22□□□□□ -0.13
HMGB1-206ENST00000405805 KIF3AQ9Y496 699 aa14.22□□□□□ -0.13
HMGB1-206ENST00000405805 SF3A1Q15459 793 aaKnown RBP14.22□□□□□ -0.13
HMGB1-206ENST00000405805 MTHFSDQ2M296 383 aaKnown RBP14.22□□□□□ -0.13
HMGB1-206ENST00000405805 GPT2Q8TD30 523 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms