RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 ALDH1L2Q3SY69 923 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 USP21Q9UK80 565 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 COG6Q9Y2V7 657 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 SPATA31A1Q5TZJ5 1347 aa4.75□□□□□ -1.65
RTN4-208ENST00000404909 ERICH6BQ5W0A0 696 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 ZNF428Q96B54 188 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 KDM6AO15550 1401 aaPredicted RBP4.74□□□□□ -1.65
RTN4-208ENST00000404909 IPO8O15397 1037 aaKnown RBP4.74□□□□□ -1.65
RTN4-208ENST00000404909 SLC4A2P04920 1241 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 RLBP1P12271 317 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 TRIM27P14373 513 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 EIF4A1P60842 406 aaKnown RBP4.74□□□□□ -1.65
RTN4-208ENST00000404909 FAM98CQ17RN3 349 aaKnown RBP4.74□□□□□ -1.65
RTN4-208ENST00000404909 TTC5Q8N0Z6 440 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 SYTL4Q96C24 671 aaPredicted RBP4.74□□□□□ -1.65
RTN4-208ENST00000404909 CCDC136Q96JN2 1154 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 BABAM1Q9NWV8 329 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 KIF16BQ96L93 1317 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 DDB1Q16531 1140 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 ATF7IPQ6VMQ6 1270 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 DZIP1LQ8IYY4 767 aaKnown RBP4.74□□□□□ -1.65
RTN4-208ENST00000404909 MRPL50Q8N5N7 158 aaKnown RBP4.74□□□□□ -1.65
RTN4-208ENST00000404909 SPATA31A5Q5VU36 1347 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 SPATA31A7Q8IWB4 1347 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 PDE3AQ14432 1141 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 HDGFL1Q5TGJ6 251 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 ZNF790Q6PG37 636 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 STK31Q9BXU1 1019 aa4.74□□□□□ -1.65
RTN4-208ENST00000404909 SLIT2O94813 1529 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 LRP6O75581 1613 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 CCDC30Q5VVM6 783 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 ITPRIPQ8IWB1 547 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 FNBP4Q8N3X1 1017 aaPredicted RBP4.73□□□□□ -1.65
RTN4-208ENST00000404909 THRAP3Q9Y2W1 955 aaKnown RBP4.73□□□□□ -1.65
RTN4-208ENST00000404909 PRAMEF22A3QJZ6 481 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 AFF2P51816 1311 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 PLCH1Q4KWH8 1693 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 BCL9LQ86UU0 1499 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 PLEKHG2Q9H7P9 1386 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 PTCD1O75127 700 aaKnown RBP4.73□□□□□ -1.65
RTN4-208ENST00000404909 VPS72Q15906 364 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 ZNF496Q96IT1 587 aaPredicted RBP4.73□□□□□ -1.65
RTN4-208ENST00000404909 CDCA7Q9BWT1 371 aaPredicted RBP4.73□□□□□ -1.65
RTN4-208ENST00000404909 TMOD3Q9NYL9 352 aa4.73□□□□□ -1.65
RTN4-208ENST00000404909 ERVV-2B6SEH9 535 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 ANXA1P04083 346 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 MS4A1P11836 297 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 NKX1-1Q15270 411 aaPredicted RBP4.72□□□□□ -1.65
RTN4-208ENST00000404909 TMEM57Q8N5G2 664 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 LRRC37A3O60309 1634 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 PARP4Q9UKK3 1724 aaKnown RBP4.72□□□□□ -1.65
RTN4-208ENST00000404909 GIGYF1O75420 1035 aaPredicted RBP4.72□□□□□ -1.65
RTN4-208ENST00000404909 G2E3Q7L622 706 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 ACSBG1Q96GR2 724 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 CHPF2Q9P2E5 772 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 DISP2A7MBM2 1401 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 BRPF1P55201 1214 aaPredicted RBP4.72□□□□□ -1.65
RTN4-208ENST00000404909 FKBP5Q13451 457 aaPredicted RBP4.72□□□□□ -1.65
RTN4-208ENST00000404909 SLC4A10Q6U841 1118 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 BARGINQ6ZT62 677 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 PKD1L3Q7Z443 1732 aa4.72□□□□□ -1.65
RTN4-208ENST00000404909 F6X3S4 739 aa4.71□□□□□ -1.65
RTN4-208ENST00000404909 PRIM1P49642 420 aaKnown RBP4.71□□□□□ -1.65
RTN4-208ENST00000404909 MVPQ14764 893 aaKnown RBP4.71□□□□□ -1.65
RTN4-208ENST00000404909 PIGBQ92521 554 aa4.71□□□□□ -1.65
RTN4-208ENST00000404909 FMNL2Q96PY5 1086 aa4.71□□□□□ -1.65
RTN4-208ENST00000404909 API5Q9BZZ5 524 aaKnown RBP4.71□□□□□ -1.65
RTN4-208ENST00000404909 PIP4K2AP48426 406 aaPredicted RBP4.71□□□□□ -1.66
RTN4-208ENST00000404909 FLIIQ13045 1269 aa4.71□□□□□ -1.66
RTN4-208ENST00000404909 MARCH10Q8NA82 808 aaPredicted RBP4.71□□□□□ -1.66
RTN4-208ENST00000404909 ARHGAP45Q92619 1136 aa4.71□□□□□ -1.66
RTN4-208ENST00000404909 GJD4Q96KN9 370 aaPredicted RBP4.71□□□□□ -1.66
RTN4-208ENST00000404909 PHAXQ9H814 394 aaKnown RBP4.71□□□□□ -1.66
RTN4-208ENST00000404909 QTRT2Q9H974 415 aaKnown RBP4.71□□□□□ -1.66
RTN4-208ENST00000404909 ASAP1Q9ULH1 1129 aa4.71□□□□□ -1.66
RTN4-208ENST00000404909 HOXB7P09629 217 aa4.71□□□□□ -1.66
RTN4-208ENST00000404909 SNRPA1P09661 255 aaKnown RBP4.71□□□□□ -1.66
RTN4-208ENST00000404909 FAM182BQ5T319 152 aa4.71□□□□□ -1.66
RTN4-208ENST00000404909 RBM42Q9BTD8 480 aaKnown RBP4.71□□□□□ -1.66
RTN4-208ENST00000404909 EP400Q96L91 3159 aa4.71□□□□□ -1.66
RTN4-208ENST00000404909 SOS1Q07889 1333 aaPredicted RBP4.71□□□□□ -1.66
RTN4-208ENST00000404909 MYL6BP14649 208 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 AIMP1Q12904 312 aaKnown RBP4.7□□□□□ -1.66
RTN4-208ENST00000404909 PROSER3Q2NL68 480 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 CHMP4AQ9BY43 222 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 DBF4Q9UBU7 674 aaPredicted RBP4.7□□□□□ -1.66
RTN4-208ENST00000404909 TRPC5Q9UL62 973 aaPredicted RBP4.7□□□□□ -1.66
RTN4-208ENST00000404909 DDX19BQ9UMR2 479 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 USP16Q9Y5T5 823 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 TNS2Q63HR2 1409 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 NRAPQ86VF7 1730 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 SCN11AQ9UI33 1791 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 PTPRCP08575 1304 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 NWD2Q9ULI1 1742 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 VIRMAQ69YN4 1812 aaKnown RBP4.7□□□□□ -1.66
RTN4-208ENST00000404909 ATG3Q9NT62 314 aa4.7□□□□□ -1.66
RTN4-208ENST00000404909 ZNF330Q9Y3S2 320 aaPredicted RBP4.7□□□□□ -1.66
RTN4-208ENST00000404909 ABCC4O15439 1325 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 KCNQ2O43526 872 aa4.69□□□□□ -1.66
RTN4-208ENST00000404909 C1orf115Q9H7X2 142 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms