RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 LRRFIP1Q32MZ4 808 aaKnown RBP22.25■■□□□ 1.15
USP48-204ENST00000400301 CHL1O00533 1208 aa22.24■■□□□ 1.15
USP48-204ENST00000400301 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.24■■□□□ 1.15
USP48-204ENST00000400301 TOMM22Q9NS69 142 aa22.24■■□□□ 1.15
USP48-204ENST00000400301 G2E3Q7L622 706 aa22.24■■□□□ 1.15
USP48-204ENST00000400301 OTUD7AQ8TE49 926 aaPredicted RBP22.24■■□□□ 1.15
USP48-204ENST00000400301 XRCC6P12956 609 aaKnown RBP eCLIP22.23■■□□□ 1.157e-11■■□□□ 12.1
USP48-204ENST00000400301 PIK3R4Q99570 1358 aa22.23■■□□□ 1.15
USP48-204ENST00000400301 AMOTQ4VCS5 1084 aa22.23■■□□□ 1.15
USP48-204ENST00000400301 DBF4Q9UBU7 674 aaPredicted RBP22.23■■□□□ 1.15
USP48-204ENST00000400301 LAMC1P11047 1609 aa22.22■■□□□ 1.15
USP48-204ENST00000400301 GOLGA6L19H0YKK7 550 aa22.22■■□□□ 1.15
USP48-204ENST00000400301 RNF17Q9BXT8 1623 aaKnown RBP22.22■■□□□ 1.15
USP48-204ENST00000400301 PDCP20941 246 aa22.22■■□□□ 1.15
USP48-204ENST00000400301 CHMP4CQ96CF2 233 aa22.22■■□□□ 1.15
USP48-204ENST00000400301 ABCC3O15438 1527 aa22.22■■□□□ 1.15
USP48-204ENST00000400301 SPG7Q9UQ90 795 aa22.22■■□□□ 1.15
USP48-204ENST00000400301 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.21■■□□□ 1.15
USP48-204ENST00000400301 SYCE3A1L190 88 aa22.21■■□□□ 1.15
USP48-204ENST00000400301 BECN2A8MW95 431 aa22.21■■□□□ 1.15
USP48-204ENST00000400301 CASTP20810 708 aaKnown RBP22.21■■□□□ 1.15
USP48-204ENST00000400301 PANK2Q9BZ23 570 aa22.21■■□□□ 1.15
USP48-204ENST00000400301 PDRG1Q9NUG6 133 aa22.21■■□□□ 1.15
USP48-204ENST00000400301 CCDC39Q9UFE4 941 aa22.21■■□□□ 1.15
USP48-204ENST00000400301 CFAP74Q9C0B2 1584 aa22.2■■□□□ 1.14
USP48-204ENST00000400301 ATP8B2P98198 1209 aa22.2■■□□□ 1.14
USP48-204ENST00000400301 MSH6P52701 1360 aa22.2■■□□□ 1.14
USP48-204ENST00000400301 PHF23Q9BUL5 403 aaPredicted RBP22.2■■□□□ 1.14
USP48-204ENST00000400301 CABP4P57796 275 aa22.2■■□□□ 1.14
USP48-204ENST00000400301 DDX54Q8TDD1 881 aaKnown RBP22.19■■□□□ 1.14
USP48-204ENST00000400301 HECW2Q9P2P5 1572 aa22.19■■□□□ 1.14
USP48-204ENST00000400301 CPLX1O14810 134 aa22.19■■□□□ 1.14
USP48-204ENST00000400301 R3HCC1Q9Y3T6 440 aaKnown RBP22.19■■□□□ 1.14
USP48-204ENST00000400301 STK3Q13188 491 aa22.18■■□□□ 1.14
USP48-204ENST00000400301 RAB3GAP1Q15042 981 aa22.18■■□□□ 1.14
USP48-204ENST00000400301 WASHC4Q2M389 1173 aa22.18■■□□□ 1.14
USP48-204ENST00000400301 BLOC1S2Q6QNY1 142 aa22.18■■□□□ 1.14
USP48-204ENST00000400301 APPP05067 770 aa22.18■■□□□ 1.14
USP48-204ENST00000400301 PRPF40BQ6NWY9 871 aaKnown RBP22.18■■□□□ 1.14
USP48-204ENST00000400301 RHPN1Q8TCX5 695 aa22.18■■□□□ 1.14
USP48-204ENST00000400301 KLHL40Q2TBA0 621 aa22.18■■□□□ 1.14
USP48-204ENST00000400301 TMX3Q96JJ7 454 aa22.17■■□□□ 1.14
USP48-204ENST00000400301 CHPF2Q9P2E5 772 aa22.17■■□□□ 1.14
USP48-204ENST00000400301 ABCC4O15439 1325 aa22.17■■□□□ 1.14
USP48-204ENST00000400301 TPM4P67936 248 aa22.17■■□□□ 1.14
USP48-204ENST00000400301 LARP1BQ659C4 914 aaKnown RBP22.17■■□□□ 1.14
USP48-204ENST00000400301 LARP6Q9BRS8 491 aaKnown RBP22.17■■□□□ 1.14
USP48-204ENST00000400301 ESYT1Q9BSJ8 1104 aa22.17■■□□□ 1.14
USP48-204ENST00000400301 SYTL4Q96C24 671 aaPredicted RBP22.17■■□□□ 1.14
USP48-204ENST00000400301 ABCA6Q8N139 1617 aa22.17■■□□□ 1.14
USP48-204ENST00000400301 MPNDQ8N594 471 aa22.17■■□□□ 1.14
USP48-204ENST00000400301 USP26Q9BXU7 913 aa22.17■■□□□ 1.14
USP48-204ENST00000400301 CCDC8Q9H0W5 538 aaPredicted RBP22.16■■□□□ 1.14
USP48-204ENST00000400301 BOLA2Q9H3K6 86 aa22.16■■□□□ 1.14
USP48-204ENST00000400301 MAP3K2Q9Y2U5 619 aa22.16■■□□□ 1.14
USP48-204ENST00000400301 SASS6Q6UVJ0 657 aa22.16■■□□□ 1.14
USP48-204ENST00000400301 LETM1O95202 739 aaPredicted RBP22.15■■□□□ 1.14
USP48-204ENST00000400301 LARP1Q6PKG0 1096 aaKnown RBP22.15■■□□□ 1.14
USP48-204ENST00000400301 CCDC83Q8IWF9 413 aa22.15■■□□□ 1.14
USP48-204ENST00000400301 METP08581 1390 aa22.15■■□□□ 1.14
USP48-204ENST00000400301 ZSCAN31Q96LW9 406 aaPredicted RBP22.15■■□□□ 1.14
USP48-204ENST00000400301 FAM13BQ9NYF5 915 aa22.15■■□□□ 1.14
USP48-204ENST00000400301 KCNA6P17658 529 aa22.15■■□□□ 1.14
USP48-204ENST00000400301 TBX22Q9Y458 520 aa22.15■■□□□ 1.14
USP48-204ENST00000400301 CPLX2Q6PUV4 134 aaKnown RBP22.14■■□□□ 1.14
USP48-204ENST00000400301 GDPD2Q9HCC8 539 aa22.14■■□□□ 1.13
USP48-204ENST00000400301 ECHDC1Q9NTX5 307 aa22.14■■□□□ 1.13
USP48-204ENST00000400301 TRDNQ13061 729 aa22.14■■□□□ 1.13
USP48-204ENST00000400301 ANKRD1Q15327 319 aa22.14■■□□□ 1.13
USP48-204ENST00000400301 PLEKHG3A1L390 1219 aa22.13■■□□□ 1.13
USP48-204ENST00000400301 HOXC9P31274 260 aa22.13■■□□□ 1.13
USP48-204ENST00000400301 HYPKQ9NX55 129 aa22.13■■□□□ 1.13
USP48-204ENST00000400301 CCDC73Q6ZRK6 1079 aa22.12■■□□□ 1.13
USP48-204ENST00000400301 KRT85P78386 507 aa22.12■■□□□ 1.13
USP48-204ENST00000400301 MYD88Q99836 296 aa22.12■■□□□ 1.13
USP48-204ENST00000400301 RALYLQ86SE5 291 aaKnown RBP22.12■■□□□ 1.13
USP48-204ENST00000400301 LIMCH1Q9UPQ0 1083 aa22.12■■□□□ 1.13
USP48-204ENST00000400301 TOM1L2Q6ZVM7 507 aa22.11■■□□□ 1.13
USP48-204ENST00000400301 ZGPATQ8N5A5 531 aaKnown RBP22.11■■□□□ 1.13
USP48-204ENST00000400301 RBM27Q9P2N5 1060 aaKnown RBP22.11■■□□□ 1.13
USP48-204ENST00000400301 CLASP1Q7Z460 1538 aa22.11■■□□□ 1.13
USP48-204ENST00000400301 PHAXQ9H814 394 aaKnown RBP22.11■■□□□ 1.13
USP48-204ENST00000400301 FERMT3Q86UX7 667 aa22.11■■□□□ 1.13
USP48-204ENST00000400301 ZSCAN30Q86W11 494 aa22.11■■□□□ 1.13
USP48-204ENST00000400301 ANKRD24Q8TF21 1146 aa22.11■■□□□ 1.13
USP48-204ENST00000400301 TMEM2Q9UHN6 1383 aa22.11■■□□□ 1.13
USP48-204ENST00000400301 LRRC59Q96AG4 307 aaKnown RBP22.1■■□□□ 1.13
USP48-204ENST00000400301 SIRT1Q96EB6 747 aa22.1■■□□□ 1.13
USP48-204ENST00000400301 STRN4Q9NRL3 753 aa22.1■■□□□ 1.13
USP48-204ENST00000400301 LTKP29376 864 aa22.1■■□□□ 1.13
USP48-204ENST00000400301 MAP3K5Q99683 1374 aa22.1■■□□□ 1.13
USP48-204ENST00000400301 SBNO1A3KN83 1393 aa22.1■■□□□ 1.13
USP48-204ENST00000400301 GTF2E1P29083 439 aaPredicted RBP22.1■■□□□ 1.13
USP48-204ENST00000400301 ADGRB3O60242 1522 aa22.09■■□□□ 1.13
USP48-204ENST00000400301 USP19O94966 1318 aa22.09■■□□□ 1.13
USP48-204ENST00000400301 PRDM11Q9NQV5 511 aa22.09■■□□□ 1.13
USP48-204ENST00000400301 CEBPZQ03701 1054 aaKnown RBP22.09■■□□□ 1.13
USP48-204ENST00000400301 FBXW7Q969H0 707 aa22.09■■□□□ 1.13
USP48-204ENST00000400301 ARHGAP31Q2M1Z3 1444 aa22.09■■□□□ 1.13
USP48-204ENST00000400301 GSPT1P15170 499 aaKnown RBP22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms