RNA–Protein interactions for RNA: ENST00000397728.7

LSS-202, Transcript of lanosterol synthase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSS, Length 4,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSS-202ENST00000397728 ATP6V1DQ9Y5K8 247 aa18.55■□□□□ 0.56
LSS-202ENST00000397728 C22orf23Q9BZE7 217 aa18.55■□□□□ 0.56
LSS-202ENST00000397728 PTMSP20962 102 aa18.55■□□□□ 0.56
LSS-202ENST00000397728 ANKRD13DQ6ZTN6 518 aa18.55■□□□□ 0.56
LSS-202ENST00000397728 ZNF622Q969S3 477 aaKnown RBP eCLIP18.55■□□□□ 0.563e-6■□□□□ 8.7
LSS-202ENST00000397728 TFCP2L1Q9NZI6 479 aa18.55■□□□□ 0.56
LSS-202ENST00000397728 C6orf229H3BNL8 230 aa18.54■□□□□ 0.56
LSS-202ENST00000397728 USP21Q9UK80 565 aa18.54■□□□□ 0.56
LSS-202ENST00000397728 CAVIN4Q5BKX8 364 aa18.54■□□□□ 0.56
LSS-202ENST00000397728 PPP1R42Q7Z4L9 355 aa18.54■□□□□ 0.56
LSS-202ENST00000397728 JARID2Q92833 1246 aaPredicted RBP18.54■□□□□ 0.56
LSS-202ENST00000397728 NPHP4O75161 1426 aaPredicted RBP18.54■□□□□ 0.56
LSS-202ENST00000397728 VPS37CA5D8V6 355 aaPredicted RBP18.54■□□□□ 0.56
LSS-202ENST00000397728 ANKRD18BA2A2Z9 1011 aa18.53■□□□□ 0.56
LSS-202ENST00000397728 KDM4AO75164 1064 aa18.53■□□□□ 0.56
LSS-202ENST00000397728 CCAR1Q8IX12 1150 aaKnown RBP18.53■□□□□ 0.56
LSS-202ENST00000397728 CWC25Q9NXE8 425 aaPredicted RBP18.53■□□□□ 0.56
LSS-202ENST00000397728 PLEKHH1Q9ULM0 1364 aa18.53■□□□□ 0.56
LSS-202ENST00000397728 NUTM1Q86Y26 1132 aa18.53■□□□□ 0.56
LSS-202ENST00000397728 DCAF5Q96JK2 942 aa18.53■□□□□ 0.56
LSS-202ENST00000397728 LRRFIP2Q9Y608 721 aaKnown RBP18.53■□□□□ 0.56
LSS-202ENST00000397728 ARHGEF10O15013 1369 aa18.53■□□□□ 0.56
LSS-202ENST00000397728 ZSCAN25Q6NSZ9 544 aa18.53■□□□□ 0.56
LSS-202ENST00000397728 PSMA5P28066 241 aa18.53■□□□□ 0.56
LSS-202ENST00000397728 CHPF2Q9P2E5 772 aa18.53■□□□□ 0.56
LSS-202ENST00000397728 COPS6Q7L5N1 327 aa18.52■□□□□ 0.56
LSS-202ENST00000397728 XAGE3Q8WTP9 111 aa18.52■□□□□ 0.56
LSS-202ENST00000397728 SMC3Q9UQE7 1217 aa18.52■□□□□ 0.56
LSS-202ENST00000397728 AKAP2Q9Y2D5 859 aa18.52■□□□□ 0.56
LSS-202ENST00000397728 DDX46Q7L014 1031 aaKnown RBP18.52■□□□□ 0.55
LSS-202ENST00000397728 SIRT1Q96EB6 747 aa18.52■□□□□ 0.55
LSS-202ENST00000397728 TSHZ2Q9NRE2 1034 aa18.52■□□□□ 0.55
LSS-202ENST00000397728 SAFBQ15424 915 aaKnown RBP eCLIP18.52■□□□□ 0.55
LSS-202ENST00000397728 UGGT1Q9NYU2 1555 aa18.51■□□□□ 0.55
LSS-202ENST00000397728 CHD1LQ86WJ1 897 aa18.51■□□□□ 0.55
LSS-202ENST00000397728 KIF1BPQ96EK5 621 aa18.51■□□□□ 0.55
LSS-202ENST00000397728 TMOD2Q9NZR1 351 aa18.51■□□□□ 0.55
LSS-202ENST00000397728 EFCAB6Q5THR3 1501 aa18.51■□□□□ 0.55
LSS-202ENST00000397728 PCDH11XQ9BZA7 1347 aa18.51■□□□□ 0.55
LSS-202ENST00000397728 PCDH11YQ9BZA8 1340 aa18.51■□□□□ 0.55
LSS-202ENST00000397728 ZNF335Q9H4Z2 1342 aaPredicted RBP18.51■□□□□ 0.55
LSS-202ENST00000397728 METP08581 1390 aa18.51■□□□□ 0.55
LSS-202ENST00000397728 SETDB2Q96T68 719 aa18.51■□□□□ 0.55
LSS-202ENST00000397728 COL17A1Q9UMD9 1497 aaPredicted RBP18.5■□□□□ 0.55
LSS-202ENST00000397728 PHACTR3Q96KR7 559 aa18.5■□□□□ 0.55
LSS-202ENST00000397728 PLEKHG3A1L390 1219 aa18.5■□□□□ 0.55
LSS-202ENST00000397728 NBPF14Q5TI25 921 aa18.5■□□□□ 0.55
LSS-202ENST00000397728 LDHAL6AQ6ZMR3 332 aa18.5■□□□□ 0.55
LSS-202ENST00000397728 CDCA7Q9BWT1 371 aaPredicted RBP18.5■□□□□ 0.55
LSS-202ENST00000397728 KDM6BO15054 1643 aa18.49■□□□□ 0.55
LSS-202ENST00000397728 KDM5DQ9BY66 1539 aa18.49■□□□□ 0.55
LSS-202ENST00000397728 NKTRP30414 1462 aaKnown RBP18.49■□□□□ 0.55
LSS-202ENST00000397728 WWC3Q9ULE0 1092 aa18.49■□□□□ 0.55
LSS-202ENST00000397728 RTCBQ9Y3I0 505 aaKnown RBP18.49■□□□□ 0.55
LSS-202ENST00000397728 HECW2Q9P2P5 1572 aa18.49■□□□□ 0.55
LSS-202ENST00000397728 TDO2P48775 406 aa18.49■□□□□ 0.55
LSS-202ENST00000397728 CDC5LQ99459 802 aaKnown RBP18.49■□□□□ 0.55
LSS-202ENST00000397728 PTPRCP08575 1304 aa18.49■□□□□ 0.55
LSS-202ENST00000397728 PIK3R4Q99570 1358 aa18.49■□□□□ 0.55
LSS-202ENST00000397728 EDC4Q6P2E9 1401 aaKnown RBP18.49■□□□□ 0.55
LSS-202ENST00000397728 TRIM27P14373 513 aa18.48■□□□□ 0.55
LSS-202ENST00000397728 PLEKHG1Q9ULL1 1385 aa18.48■□□□□ 0.55
LSS-202ENST00000397728 TPM4P67936 248 aa18.48■□□□□ 0.55
LSS-202ENST00000397728 ST5P78524 1137 aa18.48■□□□□ 0.55
LSS-202ENST00000397728 NIP7Q9Y221 180 aaKnown RBP eCLIP18.47■□□□□ 0.55
LSS-202ENST00000397728 IL16Q14005 1332 aa18.47■□□□□ 0.55
LSS-202ENST00000397728 NEK4P51957 841 aa18.47■□□□□ 0.55
LSS-202ENST00000397728 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.47■□□□□ 0.55
LSS-202ENST00000397728 CCDC43Q96MW1 224 aaKnown RBP18.46■□□□□ 0.55
LSS-202ENST00000397728 CCDC8Q9H0W5 538 aaPredicted RBP18.46■□□□□ 0.55
LSS-202ENST00000397728 BOLA2Q9H3K6 86 aa18.46■□□□□ 0.55
LSS-202ENST00000397728 SMARCA5O60264 1052 aaPredicted RBP18.46■□□□□ 0.55
LSS-202ENST00000397728 C20orf194Q5TEA3 1177 aa18.46■□□□□ 0.55
LSS-202ENST00000397728 CWC27Q6UX04 472 aaKnown RBP18.46■□□□□ 0.55
LSS-202ENST00000397728 AIDAQ96BJ3 306 aa18.46■□□□□ 0.55
LSS-202ENST00000397728 POLR3AO14802 1390 aaPredicted RBP18.46■□□□□ 0.54
LSS-202ENST00000397728 SLC5A1P13866 664 aa18.45■□□□□ 0.54
LSS-202ENST00000397728 DZIP3Q86Y13 1208 aaKnown RBP18.45■□□□□ 0.54
LSS-202ENST00000397728 SBNO1A3KN83 1393 aa18.45■□□□□ 0.54
LSS-202ENST00000397728 C8orf58Q8NAV2 365 aa18.45■□□□□ 0.54
LSS-202ENST00000397728 MAP3K5Q99683 1374 aa18.45■□□□□ 0.54
LSS-202ENST00000397728 L1TD1Q5T7N2 865 aaKnown RBP18.45■□□□□ 0.54
LSS-202ENST00000397728 XBP1P17861 261 aa18.45■□□□□ 0.54
LSS-202ENST00000397728 PREX2Q70Z35 1606 aa18.44■□□□□ 0.54
LSS-202ENST00000397728 RNMTO43148 476 aaKnown RBP18.44■□□□□ 0.54
LSS-202ENST00000397728 ZFYVE9O95405 1425 aa18.44■□□□□ 0.54
LSS-202ENST00000397728 PES1O00541 588 aaKnown RBP18.44■□□□□ 0.54
LSS-202ENST00000397728 DZIP1Q86YF9 867 aaKnown RBP18.44■□□□□ 0.54
LSS-202ENST00000397728 GNPATO15228 680 aa18.44■□□□□ 0.54
LSS-202ENST00000397728 NLRP3Q96P20 1036 aa18.44■□□□□ 0.54
LSS-202ENST00000397728 CCNL1Q9UK58 526 aaPredicted RBP18.44■□□□□ 0.54
LSS-202ENST00000397728 RAB11FIP3O75154 756 aa18.43■□□□□ 0.54
LSS-202ENST00000397728 PRIM1P49642 420 aaKnown RBP18.43■□□□□ 0.54
LSS-202ENST00000397728 PARD3Q8TEW0 1356 aa18.43■□□□□ 0.54
LSS-202ENST00000397728 ATP2B1P20020 1258 aa18.43■□□□□ 0.54
LSS-202ENST00000397728 ERVK-7P63135 1459 aa18.43■□□□□ 0.54
LSS-202ENST00000397728 BRMS1Q9HCU9 246 aa18.42■□□□□ 0.54
LSS-202ENST00000397728 PIK3C2GO75747 1445 aa18.42■□□□□ 0.54
LSS-202ENST00000397728 PER1O15534 1290 aaPredicted RBP18.42■□□□□ 0.54
LSS-202ENST00000397728 KRT24Q2M2I5 525 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms