RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 U2AF1L5P0DN76 240 aaPredicted RBP9.32□□□□□ -0.92
LIMA1-202ENST00000394943 U2AF1Q01081 240 aaKnown RBP eCLIP9.32□□□□□ -0.92
LIMA1-202ENST00000394943 MRS2Q9HD23 443 aa9.31□□□□□ -0.92
LIMA1-202ENST00000394943 LAMB2P55268 1798 aa9.3□□□□□ -0.92
LIMA1-202ENST00000394943 CHL1O00533 1208 aa9.3□□□□□ -0.92
LIMA1-202ENST00000394943 WDR43Q15061 677 aaKnown RBP eCLIP9.3□□□□□ -0.92
LIMA1-202ENST00000394943 HMOX1P09601 288 aa9.3□□□□□ -0.92
LIMA1-202ENST00000394943 LTV1Q96GA3 475 aaPredicted RBP9.3□□□□□ -0.92
LIMA1-202ENST00000394943 CAMKK2Q96RR4 588 aa9.3□□□□□ -0.92
LIMA1-202ENST00000394943 MYH14Q7Z406 1995 aaKnown RBP9.3□□□□□ -0.92
LIMA1-202ENST00000394943 PPM1GO15355 546 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-202ENST00000394943 HOXB7P09629 217 aa9.29□□□□□ -0.92
LIMA1-202ENST00000394943 IFT57Q9NWB7 429 aa9.29□□□□□ -0.92
LIMA1-202ENST00000394943 ZNF530Q6P9A1 599 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-202ENST00000394943 SLC27A3Q5K4L6 730 aa9.29□□□□□ -0.92
LIMA1-202ENST00000394943 KIAA1551Q9HCM1 1747 aa9.29□□□□□ -0.92
LIMA1-202ENST00000394943 UPF1Q92900 1129 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIMA1-202ENST00000394943 ZBED9Q6R2W3 1325 aa9.28□□□□□ -0.92
LIMA1-202ENST00000394943 WWC1Q8IX03 1113 aa9.28□□□□□ -0.92
LIMA1-202ENST00000394943 U2SURPO15042 1029 aaKnown RBP9.27□□□□□ -0.92
LIMA1-202ENST00000394943 PIGBQ92521 554 aa9.27□□□□□ -0.92
LIMA1-202ENST00000394943 CNTNAP4Q9C0A0 1308 aa9.27□□□□□ -0.93
LIMA1-202ENST00000394943 ARFGEF2Q9Y6D5 1785 aa9.27□□□□□ -0.93
LIMA1-202ENST00000394943 CALD1Q05682 793 aaKnown RBP9.27□□□□□ -0.93
LIMA1-202ENST00000394943 PDE3BQ13370 1112 aa9.27□□□□□ -0.93
LIMA1-202ENST00000394943 RC3H1Q5TC82 1133 aaKnown RBP9.27□□□□□ -0.93
LIMA1-202ENST00000394943 SMARCC1Q92922 1105 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-202ENST00000394943 CFAP44Q96MT7 982 aa9.27□□□□□ -0.93
LIMA1-202ENST00000394943 ATG3Q9NT62 314 aa9.27□□□□□ -0.93
LIMA1-202ENST00000394943 ERBB4Q15303 1308 aa9.27□□□□□ -0.93
LIMA1-202ENST00000394943 BRPF1P55201 1214 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-202ENST00000394943 C1orf141Q5JVX7 400 aa9.27□□□□□ -0.93
LIMA1-202ENST00000394943 LGR6Q9HBX8 967 aa9.27□□□□□ -0.93
LIMA1-202ENST00000394943 DLEC1Q9Y238 1755 aa9.27□□□□□ -0.93
LIMA1-202ENST00000394943 TAF7Q15545 349 aaPredicted RBP9.26□□□□□ -0.93
LIMA1-202ENST00000394943 MAPK8IP3Q9UPT6 1336 aa9.25□□□□□ -0.93
LIMA1-202ENST00000394943 LRP10Q7Z4F1 713 aa9.25□□□□□ -0.93
LIMA1-202ENST00000394943 PROM2Q8N271 834 aa9.25□□□□□ -0.93
LIMA1-202ENST00000394943 ZBTB7CA1YPR0 619 aa9.25□□□□□ -0.93
LIMA1-202ENST00000394943 CT47B1P0C2W7 299 aaPredicted RBP9.25□□□□□ -0.93
LIMA1-202ENST00000394943 AKT1S1Q96B36 256 aa9.25□□□□□ -0.93
LIMA1-202ENST00000394943 PALLDQ8WX93 1383 aa9.25□□□□□ -0.93
LIMA1-202ENST00000394943 RIPK4P57078 832 aa9.25□□□□□ -0.93
LIMA1-202ENST00000394943 SLC4A9Q96Q91 983 aa9.24□□□□□ -0.93
LIMA1-202ENST00000394943 APAF1O14727 1248 aa9.24□□□□□ -0.93
LIMA1-202ENST00000394943 EIF4A1P60842 406 aaKnown RBP9.24□□□□□ -0.93
LIMA1-202ENST00000394943 SLFN5Q08AF3 891 aa9.24□□□□□ -0.93
LIMA1-202ENST00000394943 PXDNLA1KZ92 1463 aa9.23□□□□□ -0.93
LIMA1-202ENST00000394943 CCDC9Q9Y3X0 531 aaKnown RBP9.23□□□□□ -0.93
LIMA1-202ENST00000394943 RIC1Q4ADV7 1423 aa9.23□□□□□ -0.93
LIMA1-202ENST00000394943 ZNF790Q6PG37 636 aa9.23□□□□□ -0.93
LIMA1-202ENST00000394943 ZNF428Q96B54 188 aa9.23□□□□□ -0.93
LIMA1-202ENST00000394943 PRIM1P49642 420 aaKnown RBP9.23□□□□□ -0.93
LIMA1-202ENST00000394943 NUP98P52948 1817 aa9.23□□□□□ -0.93
LIMA1-202ENST00000394943 KCNQ2O43526 872 aa9.22□□□□□ -0.93
LIMA1-202ENST00000394943 GNAI1P63096 354 aa9.22□□□□□ -0.93
LIMA1-202ENST00000394943 MPRIPQ6WCQ1 1025 aa9.22□□□□□ -0.93
LIMA1-202ENST00000394943 PTF1AQ7RTS3 328 aa9.22□□□□□ -0.93
LIMA1-202ENST00000394943 TEX13AQ9BXU3 409 aaPredicted RBP9.22□□□□□ -0.93
LIMA1-202ENST00000394943 TMOD3Q9NYL9 352 aa9.22□□□□□ -0.93
LIMA1-202ENST00000394943 USP35Q9P2H5 1018 aa9.21□□□□□ -0.93
LIMA1-202ENST00000394943 CABP4P57796 275 aa9.21□□□□□ -0.94
LIMA1-202ENST00000394943 NFATC2IPQ8NCF5 419 aa9.21□□□□□ -0.94
LIMA1-202ENST00000394943 E9PSI1 815 aa9.2□□□□□ -0.94
LIMA1-202ENST00000394943 NEFMP07197 916 aa9.2□□□□□ -0.94
LIMA1-202ENST00000394943 CCDC146Q8IYE0 955 aa9.2□□□□□ -0.94
LIMA1-202ENST00000394943 BRCA1P38398 1863 aaKnown RBP9.2□□□□□ -0.94
LIMA1-202ENST00000394943 DUSP27Q5VZP5 1158 aa9.2□□□□□ -0.94
LIMA1-202ENST00000394943 DDX54Q8TDD1 881 aaKnown RBP9.2□□□□□ -0.94
LIMA1-202ENST00000394943 GIGYF1O75420 1035 aaPredicted RBP9.2□□□□□ -0.94
LIMA1-202ENST00000394943 CYP19A1P11511 503 aaPredicted RBP9.2□□□□□ -0.94
LIMA1-202ENST00000394943 MCM10Q7L590 875 aa9.2□□□□□ -0.94
LIMA1-202ENST00000394943 LRRC4BQ9NT99 713 aa9.2□□□□□ -0.94
LIMA1-202ENST00000394943 AFDNP55196 1824 aaKnown RBP9.2□□□□□ -0.94
LIMA1-202ENST00000394943 EP400Q96L91 3159 aa9.2□□□□□ -0.94
LIMA1-202ENST00000394943 ADRA2BP18089 450 aa9.19□□□□□ -0.94
LIMA1-202ENST00000394943 RTF1Q92541 710 aaKnown RBP9.19□□□□□ -0.94
LIMA1-202ENST00000394943 MBIPQ9NS73 344 aa9.19□□□□□ -0.94
LIMA1-202ENST00000394943 DDX60Q8IY21 1712 aaKnown RBP9.19□□□□□ -0.94
LIMA1-202ENST00000394943 FANCIQ9NVI1 1328 aa9.19□□□□□ -0.94
LIMA1-202ENST00000394943 PDIA6Q15084 440 aa9.19□□□□□ -0.94
LIMA1-202ENST00000394943 INTS5Q6P9B9 1019 aaKnown RBP9.19□□□□□ -0.94
LIMA1-202ENST00000394943 LOC102724428A0A0B4J2F2 783 aa9.19□□□□□ -0.94
LIMA1-202ENST00000394943 SIK1P57059 783 aa9.19□□□□□ -0.94
LIMA1-202ENST00000394943 FMNL2Q96PY5 1086 aa9.19□□□□□ -0.94
LIMA1-202ENST00000394943 ASAP1Q9ULH1 1129 aa9.19□□□□□ -0.94
LIMA1-202ENST00000394943 ATP10DQ9P241 1426 aa9.19□□□□□ -0.94
LIMA1-202ENST00000394943 BTBD11A6QL63 1104 aa9.18□□□□□ -0.94
LIMA1-202ENST00000394943 PLEKHG5O94827 1062 aa9.18□□□□□ -0.94
LIMA1-202ENST00000394943 ITPK1Q13572 414 aa9.18□□□□□ -0.94
LIMA1-202ENST00000394943 SPINK5Q9NQ38 1064 aaPredicted RBP9.18□□□□□ -0.94
LIMA1-202ENST00000394943 LRRC37AA6NMS7 1700 aa9.18□□□□□ -0.94
LIMA1-202ENST00000394943 TRIM37O94972 964 aa9.18□□□□□ -0.94
LIMA1-202ENST00000394943 TXNRD1Q16881 649 aa9.18□□□□□ -0.94
LIMA1-202ENST00000394943 CHMP4AQ9BY43 222 aa9.18□□□□□ -0.94
LIMA1-202ENST00000394943 BAG6P46379 1132 aa9.17□□□□□ -0.94
LIMA1-202ENST00000394943 LINC00116Q8NCU8 138 aa9.17□□□□□ -0.94
LIMA1-202ENST00000394943 SNRPA1P09661 255 aaKnown RBP9.17□□□□□ -0.94
LIMA1-202ENST00000394943 COL15A1P39059 1388 aa9.17□□□□□ -0.94
LIMA1-202ENST00000394943 SSFA2P28290 1259 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms