RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 API5Q9BZZ5 524 aaKnown RBP17.54■□□□□ 0.4
PTPRF-202ENST00000372405 SPG7Q9UQ90 795 aa17.54■□□□□ 0.4
PTPRF-202ENST00000372405 BTBD11A6QL63 1104 aa17.53■□□□□ 0.4
PTPRF-202ENST00000372405 LARP1Q6PKG0 1096 aaKnown RBP17.53■□□□□ 0.4
PTPRF-202ENST00000372405 G2E3Q7L622 706 aa17.53■□□□□ 0.4
PTPRF-202ENST00000372405 SHANK3Q9BYB0 1731 aa17.53■□□□□ 0.4
PTPRF-202ENST00000372405 SOS1Q07889 1333 aaPredicted RBP17.53■□□□□ 0.4
PTPRF-202ENST00000372405 COL14A1Q05707 1796 aaKnown RBP17.53■□□□□ 0.4
PTPRF-202ENST00000372405 ZBTB7BO15156 539 aaPredicted RBP17.52■□□□□ 0.4
PTPRF-202ENST00000372405 CARD10Q9BWT7 1032 aa17.52■□□□□ 0.4
PTPRF-202ENST00000372405 STRN4Q9NRL3 753 aa17.52■□□□□ 0.4
PTPRF-202ENST00000372405 IFNL2Q8IZJ0 200 aa17.51■□□□□ 0.39
PTPRF-202ENST00000372405 PTPRCP08575 1304 aa17.51■□□□□ 0.39
PTPRF-202ENST00000372405 NECTIN2Q92692 538 aa17.51■□□□□ 0.39
PTPRF-202ENST00000372405 MRC1P22897 1456 aa17.51■□□□□ 0.39
PTPRF-202ENST00000372405 CCDC30Q5VVM6 783 aa17.5■□□□□ 0.39
PTPRF-202ENST00000372405 HEG1Q9ULI3 1381 aa17.5■□□□□ 0.39
PTPRF-202ENST00000372405 BTG4Q9NY30 223 aa17.49■□□□□ 0.39
PTPRF-202ENST00000372405 INTS3Q68E01 1043 aaKnown RBP17.49■□□□□ 0.39
PTPRF-202ENST00000372405 RBM19Q9Y4C8 960 aaKnown RBP17.49■□□□□ 0.39
PTPRF-202ENST00000372405 EVA1CP58658 441 aa17.48■□□□□ 0.39
PTPRF-202ENST00000372405 STK31Q9BXU1 1019 aa17.48■□□□□ 0.39
PTPRF-202ENST00000372405 SLC52A2Q9HAB3 445 aa17.48■□□□□ 0.39
PTPRF-202ENST00000372405 HOXB7P09629 217 aa17.48■□□□□ 0.39
PTPRF-202ENST00000372405 PIP4K2BP78356 416 aa17.48■□□□□ 0.39
PTPRF-202ENST00000372405 HDGFL1Q5TGJ6 251 aa17.48■□□□□ 0.39
PTPRF-202ENST00000372405 TOM1O60784 492 aa17.47■□□□□ 0.39
PTPRF-202ENST00000372405 IL2RBP14784 551 aa17.47■□□□□ 0.39
PTPRF-202ENST00000372405 DCAF5Q96JK2 942 aa17.47■□□□□ 0.39
PTPRF-202ENST00000372405 RWDD1Q9H446 243 aaPredicted RBP17.47■□□□□ 0.39
PTPRF-202ENST00000372405 FLIIQ13045 1269 aa17.46■□□□□ 0.39
PTPRF-202ENST00000372405 HDAC1Q13547 482 aaPredicted RBP17.46■□□□□ 0.39
PTPRF-202ENST00000372405 NFATC2IPQ8NCF5 419 aa17.46■□□□□ 0.39
PTPRF-202ENST00000372405 PLCH1Q4KWH8 1693 aa17.46■□□□□ 0.39
PTPRF-202ENST00000372405 F6X3S4 739 aa17.46■□□□□ 0.39
PTPRF-202ENST00000372405 ZCRB1Q8TBF4 217 aaKnown RBP17.46■□□□□ 0.39
PTPRF-202ENST00000372405 C5P01031 1676 aa17.45■□□□□ 0.38
PTPRF-202ENST00000372405 N4BP2Q86UW6 1770 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-202ENST00000372405 GIGYF1O75420 1035 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-202ENST00000372405 SLC39A6Q13433 755 aa17.45■□□□□ 0.38
PTPRF-202ENST00000372405 C1orf115Q9H7X2 142 aa17.45■□□□□ 0.38
PTPRF-202ENST00000372405 PCDH11XQ9BZA7 1347 aa17.44■□□□□ 0.38
PTPRF-202ENST00000372405 PCDH11YQ9BZA8 1340 aa17.44■□□□□ 0.38
PTPRF-202ENST00000372405 PRAMEF22A3QJZ6 481 aa17.44■□□□□ 0.38
PTPRF-202ENST00000372405 EIF2S2P20042 333 aaKnown RBP17.44■□□□□ 0.38
PTPRF-202ENST00000372405 HSP90AB1P08238 724 aaKnown RBP17.44■□□□□ 0.38
PTPRF-202ENST00000372405 ZNF790Q6PG37 636 aa17.44■□□□□ 0.38
PTPRF-202ENST00000372405 USP35Q9P2H5 1018 aa17.44■□□□□ 0.38
PTPRF-202ENST00000372405 NRAPQ86VF7 1730 aa17.43■□□□□ 0.38
PTPRF-202ENST00000372405 PHAXQ9H814 394 aaKnown RBP17.43■□□□□ 0.38
PTPRF-202ENST00000372405 CHPF2Q9P2E5 772 aa17.43■□□□□ 0.38
PTPRF-202ENST00000372405 GLI3P10071 1580 aa17.42■□□□□ 0.38
PTPRF-202ENST00000372405 DISP2A7MBM2 1401 aa17.42■□□□□ 0.38
PTPRF-202ENST00000372405 RGS3P49796 1198 aa17.42■□□□□ 0.38
PTPRF-202ENST00000372405 FKBP5Q13451 457 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-202ENST00000372405 SIRT2Q8IXJ6 389 aa17.42■□□□□ 0.38
PTPRF-202ENST00000372405 CHMP4BQ9H444 224 aaKnown RBP17.42■□□□□ 0.38
PTPRF-202ENST00000372405 TOGARAM1Q9Y4F4 1720 aa17.42■□□□□ 0.38
PTPRF-202ENST00000372405 WNK3Q9BYP7 1800 aa17.41■□□□□ 0.38
PTPRF-202ENST00000372405 UBAP1LF5GYI3 381 aa17.41■□□□□ 0.38
PTPRF-202ENST00000372405 NKX1-1Q15270 411 aaPredicted RBP17.41■□□□□ 0.38
PTPRF-202ENST00000372405 PDZRN3Q9UPQ7 1066 aa17.41■□□□□ 0.38
PTPRF-202ENST00000372405 ADAMTS2O95450 1211 aa17.4■□□□□ 0.38
PTPRF-202ENST00000372405 ANXA1P04083 346 aa17.4■□□□□ 0.38
PTPRF-202ENST00000372405 SLC4A10Q6U841 1118 aa17.4■□□□□ 0.38
PTPRF-202ENST00000372405 SMC5Q8IY18 1101 aa17.4■□□□□ 0.38
PTPRF-202ENST00000372405 MEIS3Q99687 375 aa17.4■□□□□ 0.38
PTPRF-202ENST00000372405 ATP10DQ9P241 1426 aa17.4■□□□□ 0.38
PTPRF-202ENST00000372405 DDX54Q8TDD1 881 aaKnown RBP17.39■□□□□ 0.37
PTPRF-202ENST00000372405 ZNF496Q96IT1 587 aaPredicted RBP17.39■□□□□ 0.37
PTPRF-202ENST00000372405 CCT4P50991 539 aaKnown RBP17.39■□□□□ 0.37
PTPRF-202ENST00000372405 CABP4P57796 275 aa17.39■□□□□ 0.37
PTPRF-202ENST00000372405 PROSER3Q2NL68 480 aa17.39■□□□□ 0.37
PTPRF-202ENST00000372405 UBR2Q8IWV8 1755 aa17.38■□□□□ 0.37
PTPRF-202ENST00000372405 PAPPAQ13219 1627 aa17.38■□□□□ 0.37
PTPRF-202ENST00000372405 PXDNLA1KZ92 1463 aa17.38■□□□□ 0.37
PTPRF-202ENST00000372405 PDE4AP27815 886 aa17.37■□□□□ 0.37
PTPRF-202ENST00000372405 DBF4Q9UBU7 674 aaPredicted RBP17.37■□□□□ 0.37
PTPRF-202ENST00000372405 CHMP4AQ9BY43 222 aa17.37■□□□□ 0.37
PTPRF-202ENST00000372405 NUTM2BA6NNL0 878 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-202ENST00000372405 NUTM2EB1AL46 878 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-202ENST00000372405 ERVV-2B6SEH9 535 aa17.36■□□□□ 0.37
PTPRF-202ENST00000372405 PDIA6Q15084 440 aa17.36■□□□□ 0.37
PTPRF-202ENST00000372405 NUTM2AQ8IVF1 878 aaPredicted RBP17.36■□□□□ 0.37
PTPRF-202ENST00000372405 BACH2Q9BYV9 841 aa17.36■□□□□ 0.37
PTPRF-202ENST00000372405 NWD2Q9ULI1 1742 aa17.35■□□□□ 0.37
PTPRF-202ENST00000372405 ADCY9O60503 1353 aa17.35■□□□□ 0.37
PTPRF-202ENST00000372405 LAMB4A4D0S4 1761 aa17.35■□□□□ 0.37
PTPRF-202ENST00000372405 SLIT2O94813 1529 aa17.34■□□□□ 0.37
PTPRF-202ENST00000372405 KCPQ6ZWJ8 1503 aa17.34■□□□□ 0.37
PTPRF-202ENST00000372405 TTC5Q8N0Z6 440 aa17.34■□□□□ 0.37
PTPRF-202ENST00000372405 ITGB4P16144 1822 aa17.34■□□□□ 0.37
PTPRF-202ENST00000372405 CEP85Q6P2H3 762 aa17.33■□□□□ 0.37
PTPRF-202ENST00000372405 PI4KAP2A4QPH2 592 aa17.33■□□□□ 0.36
PTPRF-202ENST00000372405 ANKRD44Q8N8A2 993 aa17.33■□□□□ 0.36
PTPRF-202ENST00000372405 PI4KAP1Q8N8J0 262 aa17.33■□□□□ 0.36
PTPRF-202ENST00000372405 FMNL2Q96PY5 1086 aa17.33■□□□□ 0.36
PTPRF-202ENST00000372405 DDX21Q9NR30 783 aaKnown RBP eCLIP17.33■□□□□ 0.36
PTPRF-202ENST00000372405 USP16Q9Y5T5 823 aa17.33■□□□□ 0.36
PTPRF-202ENST00000372405 SNRPA1P09661 255 aaKnown RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms