RNA–Protein interactions for RNA: ENST00000357890.9

RNF40-202, Transcript of ring finger protein 40, humanhuman

TSL 2 BASIC

Gene RNF40, Length 3,917 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-202ENST00000357890 PIK3C2BO00750 1634 aa12.04□□□□□ -0.48
RNF40-202ENST00000357890 ARHGEF28Q8N1W1 1705 aaKnown RBP12.04□□□□□ -0.48
RNF40-202ENST00000357890 FAM135BQ49AJ0 1406 aa12.04□□□□□ -0.48
RNF40-202ENST00000357890 EXOC6BQ9Y2D4 811 aa12.04□□□□□ -0.48
RNF40-202ENST00000357890 F6X3S4 739 aa12.03□□□□□ -0.48
RNF40-202ENST00000357890 THEMISQ8N1K5 641 aaPredicted RBP12.03□□□□□ -0.48
RNF40-202ENST00000357890 ERC2O15083 957 aa12.03□□□□□ -0.48
RNF40-202ENST00000357890 MBD3O95983 291 aa12.03□□□□□ -0.48
RNF40-202ENST00000357890 OTUD7AQ8TE49 926 aaPredicted RBP12.03□□□□□ -0.48
RNF40-202ENST00000357890 TAOK2Q9UL54 1235 aa12.03□□□□□ -0.48
RNF40-202ENST00000357890 ALKQ9UM73 1620 aa12.03□□□□□ -0.48
RNF40-202ENST00000357890 TSHZ3Q63HK5 1081 aa12.03□□□□□ -0.48
RNF40-202ENST00000357890 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.03□□□□□ -0.48
RNF40-202ENST00000357890 EIF4A2Q14240 407 aaKnown RBP12.02□□□□□ -0.48
RNF40-202ENST00000357890 TTC22Q5TAA0 569 aa12.02□□□□□ -0.48
RNF40-202ENST00000357890 PLEKHM2Q8IWE5 1019 aa12.02□□□□□ -0.48
RNF40-202ENST00000357890 PPP1R9BQ96SB3 815 aa12.02□□□□□ -0.48
RNF40-202ENST00000357890 ABCC4O15439 1325 aa12.02□□□□□ -0.48
RNF40-202ENST00000357890 SDSP20132 328 aa12.02□□□□□ -0.49
RNF40-202ENST00000357890 U2AF2P26368 475 aaKnown RBP eCLIP12.02□□□□□ -0.49
RNF40-202ENST00000357890 ADGRB2O60241 1585 aa12.02□□□□□ -0.49
RNF40-202ENST00000357890 MEIS3Q99687 375 aa12.02□□□□□ -0.49
RNF40-202ENST00000357890 ZNF853P0CG23 659 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 CEBPAP49715 358 aaPredicted RBP12.01□□□□□ -0.49
RNF40-202ENST00000357890 CWC22Q9HCG8 908 aaKnown RBP12.01□□□□□ -0.49
RNF40-202ENST00000357890 PRDM4Q9UKN5 801 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 ACEP12821 1306 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 TTC21BQ7Z4L5 1316 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 COL3A1P02461 1466 aaPredicted RBP12.01□□□□□ -0.49
RNF40-202ENST00000357890 AATKQ6ZMQ8 1374 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 FIBPO43427 364 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 NOLC1Q14978 699 aaKnown RBP eCLIP12.01□□□□□ -0.49
RNF40-202ENST00000357890 DCTPP1Q9H773 170 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 PTPRCP08575 1304 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 HSP90AB2PQ58FF8 381 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 SLC26A8Q96RN1 970 aa12.01□□□□□ -0.49
RNF40-202ENST00000357890 ZGPATQ8N5A5 531 aaKnown RBP12□□□□□ -0.49
RNF40-202ENST00000357890 ANKRD44Q8N8A2 993 aa12□□□□□ -0.49
RNF40-202ENST00000357890 CCT4P50991 539 aaKnown RBP12□□□□□ -0.49
RNF40-202ENST00000357890 UPF3BQ9BZI7 483 aaKnown RBP12□□□□□ -0.49
RNF40-202ENST00000357890 LRRC7Q96NW7 1537 aa12□□□□□ -0.49
RNF40-202ENST00000357890 CCDC66A2RUB6 948 aa12□□□□□ -0.49
RNF40-202ENST00000357890 NLRP1Q9C000 1473 aa12□□□□□ -0.49
RNF40-202ENST00000357890 CD163L1Q9NR16 1453 aa12□□□□□ -0.49
RNF40-202ENST00000357890 LETM1O95202 739 aaPredicted RBP11.99□□□□□ -0.49
RNF40-202ENST00000357890 DMTNQ08495 405 aa11.99□□□□□ -0.49
RNF40-202ENST00000357890 LRSAM1Q6UWE0 723 aa11.99□□□□□ -0.49
RNF40-202ENST00000357890 METP08581 1390 aa11.99□□□□□ -0.49
RNF40-202ENST00000357890 EIF2S2P20042 333 aaKnown RBP11.99□□□□□ -0.49
RNF40-202ENST00000357890 PKP1Q13835 747 aa11.99□□□□□ -0.49
RNF40-202ENST00000357890 SIRT2Q8IXJ6 389 aa11.99□□□□□ -0.49
RNF40-202ENST00000357890 GNAI2P04899 355 aa11.99□□□□□ -0.49
RNF40-202ENST00000357890 GSPT1P15170 499 aaKnown RBP11.99□□□□□ -0.49
RNF40-202ENST00000357890 MCM5P33992 734 aa11.99□□□□□ -0.49
RNF40-202ENST00000357890 ADCY5O95622 1261 aa11.98□□□□□ -0.49
RNF40-202ENST00000357890 NLRP6P59044 892 aa11.98□□□□□ -0.49
RNF40-202ENST00000357890 SIRT1Q96EB6 747 aa11.98□□□□□ -0.49
RNF40-202ENST00000357890 GTPBP4Q9BZE4 634 aaKnown RBP11.98□□□□□ -0.49
RNF40-202ENST00000357890 A2ML1A8K2U0 1454 aa11.98□□□□□ -0.49
RNF40-202ENST00000357890 NUTM2GQ5VZR2 741 aa11.98□□□□□ -0.49
RNF40-202ENST00000357890 C16orf45Q96MC5 204 aaPredicted RBP11.98□□□□□ -0.49
RNF40-202ENST00000357890 PTCH1Q13635 1447 aa11.98□□□□□ -0.49
RNF40-202ENST00000357890 GNAI3P08754 354 aa11.98□□□□□ -0.49
RNF40-202ENST00000357890 HCLS1P14317 486 aaPredicted RBP11.98□□□□□ -0.49
RNF40-202ENST00000357890 TERF1P54274 439 aa11.98□□□□□ -0.49
RNF40-202ENST00000357890 IL1RAPL2Q9NP60 686 aa11.98□□□□□ -0.49
RNF40-202ENST00000357890 CDK12Q9NYV4 1490 aaPredicted RBP11.98□□□□□ -0.49
RNF40-202ENST00000357890 CHL1O00533 1208 aa11.97□□□□□ -0.49
RNF40-202ENST00000357890 PDIA4P13667 645 aaKnown RBP11.97□□□□□ -0.49
RNF40-202ENST00000357890 TPD52L1Q16890 204 aaPredicted RBP11.97□□□□□ -0.49
RNF40-202ENST00000357890 CCDC30Q5VVM6 783 aa11.97□□□□□ -0.49
RNF40-202ENST00000357890 USP26Q9BXU7 913 aa11.97□□□□□ -0.49
RNF40-202ENST00000357890 LRRCC1Q9C099 1032 aa11.97□□□□□ -0.49
RNF40-202ENST00000357890 HS1BP3Q53T59 392 aa11.97□□□□□ -0.49
RNF40-202ENST00000357890 SIGLEC1Q9BZZ2 1709 aa11.97□□□□□ -0.49
RNF40-202ENST00000357890 TMEM131LA2VDJ0 1609 aa11.97□□□□□ -0.49
RNF40-202ENST00000357890 ZNF500O60304 480 aaPredicted RBP11.97□□□□□ -0.49
RNF40-202ENST00000357890 MAP4K4O95819 1239 aaPredicted RBP11.97□□□□□ -0.49
RNF40-202ENST00000357890 CEP85Q6P2H3 762 aa11.96□□□□□ -0.49
RNF40-202ENST00000357890 PRIMPOLQ96LW4 560 aa11.96□□□□□ -0.49
RNF40-202ENST00000357890 KIF24Q5T7B8 1368 aa11.96□□□□□ -0.49
RNF40-202ENST00000357890 ZBTB22O15209 634 aa11.96□□□□□ -0.49
RNF40-202ENST00000357890 ZRSR1Q15695 479 aaKnown RBP11.96□□□□□ -0.49
RNF40-202ENST00000357890 LMOD2Q6P5Q4 547 aa11.96□□□□□ -0.49
RNF40-202ENST00000357890 MYRIPQ8NFW9 859 aa11.96□□□□□ -0.49
RNF40-202ENST00000357890 FBXW7Q969H0 707 aa11.96□□□□□ -0.49
RNF40-202ENST00000357890 SURF6O75683 361 aaKnown RBP11.96□□□□□ -0.5
RNF40-202ENST00000357890 PREX1Q8TCU6 1659 aa11.96□□□□□ -0.5
RNF40-202ENST00000357890 VPS37CA5D8V6 355 aaPredicted RBP11.95□□□□□ -0.5
RNF40-202ENST00000357890 KIF20AO95235 890 aa11.95□□□□□ -0.5
RNF40-202ENST00000357890 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.95□□□□□ -0.5
RNF40-202ENST00000357890 V9GYY5 206 aaPredicted RBP11.95□□□□□ -0.5
RNF40-202ENST00000357890 UBTFL1P0CB47 393 aaPredicted RBP11.95□□□□□ -0.5
RNF40-202ENST00000357890 CCDC112Q8NEF3 446 aa11.95□□□□□ -0.5
RNF40-202ENST00000357890 TMEM63CQ9P1W3 806 aa11.95□□□□□ -0.5
RNF40-202ENST00000357890 PIK3R4Q99570 1358 aa11.95□□□□□ -0.5
RNF40-202ENST00000357890 TRIM5Q9C035 493 aa11.95□□□□□ -0.5
RNF40-202ENST00000357890 CPSF1Q10570 1443 aaKnown RBP11.94□□□□□ -0.5
RNF40-202ENST00000357890 ZNF445P59923 1031 aa11.94□□□□□ -0.5
RNF40-202ENST00000357890 BCL2L12Q9HB09 334 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms