RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 ZBTB40Q9NUA8 1239 aa13.8□□□□□ -0.2
SVIP-201ENST00000354193 USP31Q70CQ4 1352 aa13.8□□□□□ -0.2
SVIP-201ENST00000354193 GNAI2P04899 355 aa13.8□□□□□ -0.2
SVIP-201ENST00000354193 ZNF853P0CG23 659 aa13.8□□□□□ -0.2
SVIP-201ENST00000354193 C8orf37Q96NL8 207 aa13.8□□□□□ -0.2
SVIP-201ENST00000354193 SPATA31A3Q5VYP0 1347 aa13.79□□□□□ -0.2
SVIP-201ENST00000354193 IPO9Q96P70 1041 aaKnown RBP13.79□□□□□ -0.2
SVIP-201ENST00000354193 DDX58O95786 925 aaKnown RBP13.79□□□□□ -0.2
SVIP-201ENST00000354193 CHD1LQ86WJ1 897 aa13.78□□□□□ -0.2
SVIP-201ENST00000354193 C16orf71Q8IYS4 520 aaPredicted RBP13.78□□□□□ -0.2
SVIP-201ENST00000354193 ZBTB7BO15156 539 aaPredicted RBP13.78□□□□□ -0.2
SVIP-201ENST00000354193 NPHP1O15259 732 aa13.78□□□□□ -0.2
SVIP-201ENST00000354193 SRGAP3O43295 1099 aa13.78□□□□□ -0.2
SVIP-201ENST00000354193 CCT4P50991 539 aaKnown RBP13.78□□□□□ -0.2
SVIP-201ENST00000354193 CWF19L2Q2TBE0 894 aaKnown RBP13.78□□□□□ -0.2
SVIP-201ENST00000354193 FOXD4L1Q9NU39 408 aa13.78□□□□□ -0.2
SVIP-201ENST00000354193 MAP3K2Q9Y2U5 619 aa13.78□□□□□ -0.2
SVIP-201ENST00000354193 USP19O94966 1318 aa13.78□□□□□ -0.2
SVIP-201ENST00000354193 ZNF496Q96IT1 587 aaPredicted RBP13.78□□□□□ -0.2
SVIP-201ENST00000354193 ZBTB3Q9H5J0 574 aa13.78□□□□□ -0.2
SVIP-201ENST00000354193 GNAI3P08754 354 aa13.77□□□□□ -0.21
SVIP-201ENST00000354193 IL2RBP14784 551 aa13.77□□□□□ -0.21
SVIP-201ENST00000354193 MAP4K4O95819 1239 aaPredicted RBP13.77□□□□□ -0.21
SVIP-201ENST00000354193 DBF4Q9UBU7 674 aaPredicted RBP13.77□□□□□ -0.21
SVIP-201ENST00000354193 COL3A1P02461 1466 aaPredicted RBP13.77□□□□□ -0.21
SVIP-201ENST00000354193 TOM1O60784 492 aa13.76□□□□□ -0.21
SVIP-201ENST00000354193 DNAAF4Q8WXU2 420 aa13.76□□□□□ -0.21
SVIP-201ENST00000354193 CHMP4AQ9BY43 222 aa13.76□□□□□ -0.21
SVIP-201ENST00000354193 TMOD3Q9NYL9 352 aa13.76□□□□□ -0.21
SVIP-201ENST00000354193 PROSER3Q2NL68 480 aa13.76□□□□□ -0.21
SVIP-201ENST00000354193 COPS6Q7L5N1 327 aa13.76□□□□□ -0.21
SVIP-201ENST00000354193 MYD88Q99836 296 aa13.76□□□□□ -0.21
SVIP-201ENST00000354193 RGPD8O14715 1765 aaPredicted RBP13.76□□□□□ -0.21
SVIP-201ENST00000354193 EIF4A1P60842 406 aaKnown RBP13.76□□□□□ -0.21
SVIP-201ENST00000354193 ZNF790Q6PG37 636 aa13.76□□□□□ -0.21
SVIP-201ENST00000354193 EXOC5O00471 708 aa13.75□□□□□ -0.21
SVIP-201ENST00000354193 XAGE3Q8WTP9 111 aa13.75□□□□□ -0.21
SVIP-201ENST00000354193 USP16Q9Y5T5 823 aa13.75□□□□□ -0.21
SVIP-201ENST00000354193 KDM2BQ8NHM5 1336 aa13.75□□□□□ -0.21
SVIP-201ENST00000354193 MSH5O43196 834 aa13.75□□□□□ -0.21
SVIP-201ENST00000354193 HTATSF1O43719 755 aaKnown RBP13.75□□□□□ -0.21
SVIP-201ENST00000354193 NOL8Q76FK4 1167 aaKnown RBP13.75□□□□□ -0.21
SVIP-201ENST00000354193 DDRGK1Q96HY6 314 aa13.75□□□□□ -0.21
SVIP-201ENST00000354193 SEC24BO95487 1268 aa13.74□□□□□ -0.21
SVIP-201ENST00000354193 ARHGAP45Q92619 1136 aa13.74□□□□□ -0.21
SVIP-201ENST00000354193 HSP90AB1P08238 724 aaKnown RBP13.74□□□□□ -0.21
SVIP-201ENST00000354193 PHKG2P15735 406 aa13.74□□□□□ -0.21
SVIP-201ENST00000354193 FMNL2Q96PY5 1086 aa13.74□□□□□ -0.21
SVIP-201ENST00000354193 ITSN1Q15811 1721 aa13.74□□□□□ -0.21
SVIP-201ENST00000354193 CYP27B1O15528 508 aa13.73□□□□□ -0.21
SVIP-201ENST00000354193 IQSEC2Q5JU85 1478 aa13.73□□□□□ -0.21
SVIP-201ENST00000354193 FAM182BQ5T319 152 aa13.73□□□□□ -0.21
SVIP-201ENST00000354193 NUTM1Q86Y26 1132 aa13.73□□□□□ -0.21
SVIP-201ENST00000354193 PTPRCP08575 1304 aa13.73□□□□□ -0.21
SVIP-201ENST00000354193 AAMPQ13685 434 aa13.73□□□□□ -0.21
SVIP-201ENST00000354193 CASC1Q6TDU7 716 aa13.73□□□□□ -0.21
SVIP-201ENST00000354193 OTUD7AQ8TE49 926 aaPredicted RBP13.73□□□□□ -0.21
SVIP-201ENST00000354193 A1BGP04217 495 aa13.72□□□□□ -0.21
SVIP-201ENST00000354193 TAF7LQ5H9L4 462 aa13.72□□□□□ -0.21
SVIP-201ENST00000354193 BECN1Q14457 450 aa13.72□□□□□ -0.21
SVIP-201ENST00000354193 TPRNQ4KMQ1 711 aa13.72□□□□□ -0.21
SVIP-201ENST00000354193 GCC1Q96CN9 775 aa13.72□□□□□ -0.21
SVIP-201ENST00000354193 DCAF5Q96JK2 942 aa13.72□□□□□ -0.21
SVIP-201ENST00000354193 SLC52A2Q9HAB3 445 aa13.72□□□□□ -0.21
SVIP-201ENST00000354193 NBPF7P0C2Y1 421 aaPredicted RBP13.71□□□□□ -0.21
SVIP-201ENST00000354193 GPTP24298 496 aa13.71□□□□□ -0.21
SVIP-201ENST00000354193 TAOK2Q9UL54 1235 aa13.71□□□□□ -0.21
SVIP-201ENST00000354193 SNRPA1P09661 255 aaKnown RBP13.71□□□□□ -0.22
SVIP-201ENST00000354193 PPP1R42Q7Z4L9 355 aa13.71□□□□□ -0.22
SVIP-201ENST00000354193 SSH2Q76I76 1423 aa13.71□□□□□ -0.22
SVIP-201ENST00000354193 GIGYF1O75420 1035 aaPredicted RBP13.71□□□□□ -0.22
SVIP-201ENST00000354193 RPAP2Q8IXW5 612 aaPredicted RBP13.71□□□□□ -0.22
SVIP-201ENST00000354193 KIF20BQ96Q89 1820 aa13.7□□□□□ -0.22
SVIP-201ENST00000354193 UBE3BQ7Z3V4 1068 aa13.7□□□□□ -0.22
SVIP-201ENST00000354193 KCNJ4P48050 445 aa13.7□□□□□ -0.22
SVIP-201ENST00000354193 PA2G4Q9UQ80 394 aaKnown RBP13.7□□□□□ -0.22
SVIP-201ENST00000354193 NCBP3Q53F19 620 aaKnown RBP13.7□□□□□ -0.22
SVIP-201ENST00000354193 MST1RQ04912 1400 aa13.69□□□□□ -0.22
SVIP-201ENST00000354193 CEP85Q6P2H3 762 aa13.69□□□□□ -0.22
SVIP-201ENST00000354193 GTF2E1P29083 439 aaPredicted RBP13.69□□□□□ -0.22
SVIP-201ENST00000354193 G3BP1Q13283 466 aaKnown RBP eCLIP13.69□□□□□ -0.22
SVIP-201ENST00000354193 PNMA6EA0A0J9YXQ4 647 aa13.69□□□□□ -0.22
SVIP-201ENST00000354193 HDAC1Q13547 482 aaPredicted RBP13.69□□□□□ -0.22
SVIP-201ENST00000354193 FAM98CQ17RN3 349 aaKnown RBP13.69□□□□□ -0.22
SVIP-201ENST00000354193 C8orf34Q49A92 452 aa13.69□□□□□ -0.22
SVIP-201ENST00000354193 ANKRD13DQ6ZTN6 518 aa13.69□□□□□ -0.22
SVIP-201ENST00000354193 NEUROD6Q96NK8 337 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 SHPRHQ149N8 1683 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 KCNQ4P56696 695 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 DDB1Q16531 1140 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 KLHDC4Q8TBB5 520 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 LRRCC1Q9C099 1032 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 A0A087WZG4 1122 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 IFIT2P09913 472 aaKnown RBP13.68□□□□□ -0.22
SVIP-201ENST00000354193 PRIM1P49642 420 aaKnown RBP13.68□□□□□ -0.22
SVIP-201ENST00000354193 INTS3Q68E01 1043 aaKnown RBP13.68□□□□□ -0.22
SVIP-201ENST00000354193 ANP32EQ9BTT0 268 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 C22orf23Q9BZE7 217 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 RTL1A6NKG5 1358 aa13.68□□□□□ -0.22
SVIP-201ENST00000354193 HYPKQ9NX55 129 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms