RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 LNPKQ9C0E8 428 aa20.41■□□□□ 0.86
SMAD4-201ENST00000342988 EHMT1Q9H9B1 1298 aa20.41■□□□□ 0.86
SMAD4-201ENST00000342988 GNAI3P08754 354 aa20.41■□□□□ 0.86
SMAD4-201ENST00000342988 LRSAM1Q6UWE0 723 aa20.41■□□□□ 0.86
SMAD4-201ENST00000342988 CBX1P83916 185 aa20.4■□□□□ 0.86
SMAD4-201ENST00000342988 PRKCSHP14314 528 aaPredicted RBP20.4■□□□□ 0.86
SMAD4-201ENST00000342988 RIPK4P57078 832 aa20.4■□□□□ 0.86
SMAD4-201ENST00000342988 PHF23Q9BUL5 403 aaPredicted RBP20.4■□□□□ 0.86
SMAD4-201ENST00000342988 NDC80O14777 642 aa20.4■□□□□ 0.86
SMAD4-201ENST00000342988 CNNM1Q9NRU3 951 aa20.4■□□□□ 0.86
SMAD4-201ENST00000342988 STIM2Q9P246 746 aa20.4■□□□□ 0.86
SMAD4-201ENST00000342988 RAPGEF4Q8WZA2 1011 aa20.4■□□□□ 0.86
SMAD4-201ENST00000342988 SH3BP5O60239 455 aa20.4■□□□□ 0.86
SMAD4-201ENST00000342988 UBAC1Q9BSL1 405 aa20.4■□□□□ 0.86
SMAD4-201ENST00000342988 KDM4AO75164 1064 aa20.4■□□□□ 0.86
SMAD4-201ENST00000342988 DIAPH1O60610 1272 aaKnown RBP20.39■□□□□ 0.86
SMAD4-201ENST00000342988 RASAL2Q9UJF2 1139 aa20.39■□□□□ 0.85
SMAD4-201ENST00000342988 IBSPP21815 317 aaPredicted RBP20.39■□□□□ 0.85
SMAD4-201ENST00000342988 GBP7Q8N8V2 638 aaPredicted RBP20.39■□□□□ 0.85
SMAD4-201ENST00000342988 KIF4BQ2VIQ3 1234 aa20.39■□□□□ 0.85
SMAD4-201ENST00000342988 MAP3K11Q16584 847 aa20.38■□□□□ 0.85
SMAD4-201ENST00000342988 CCDC30Q5VVM6 783 aa20.38■□□□□ 0.85
SMAD4-201ENST00000342988 KIAA1524Q8TCG1 905 aa20.38■□□□□ 0.85
SMAD4-201ENST00000342988 KRT32Q14532 448 aa20.38■□□□□ 0.85
SMAD4-201ENST00000342988 MPHOSPH9Q99550 1183 aa20.38■□□□□ 0.85
SMAD4-201ENST00000342988 CTNNA3Q9UI47 895 aa20.38■□□□□ 0.85
SMAD4-201ENST00000342988 GON4LQ3T8J9 2241 aa20.38■□□□□ 0.85
SMAD4-201ENST00000342988 LARP1BQ659C4 914 aaKnown RBP20.38■□□□□ 0.85
SMAD4-201ENST00000342988 PAIP2Q9BPZ3 127 aaKnown RBP20.38■□□□□ 0.85
SMAD4-201ENST00000342988 RBM5P52756 815 aaKnown RBP eCLIP20.38■□□□□ 0.85
SMAD4-201ENST00000342988 GRPEL1Q9HAV7 217 aa20.38■□□□□ 0.85
SMAD4-201ENST00000342988 NUP88Q99567 741 aaPredicted RBP20.38■□□□□ 0.85
SMAD4-201ENST00000342988 SRCIN1Q9C0H9 1055 aa20.38■□□□□ 0.85
SMAD4-201ENST00000342988 NCAPGQ9BPX3 1015 aa20.37■□□□□ 0.85
SMAD4-201ENST00000342988 AIMP1Q12904 312 aaKnown RBP20.37■□□□□ 0.85
SMAD4-201ENST00000342988 EPSTI1Q96J88 318 aa20.37■□□□□ 0.85
SMAD4-201ENST00000342988 RUNDC1Q96C34 613 aa20.37■□□□□ 0.85
SMAD4-201ENST00000342988 ZBTB16Q05516 673 aa20.37■□□□□ 0.85
SMAD4-201ENST00000342988 STXBP4Q6ZWJ1 553 aa20.36■□□□□ 0.85
SMAD4-201ENST00000342988 SUDS3Q9H7L9 328 aaPredicted RBP20.36■□□□□ 0.85
SMAD4-201ENST00000342988 NEMFO60524 1076 aa20.36■□□□□ 0.85
SMAD4-201ENST00000342988 KIF5BP33176 963 aa20.36■□□□□ 0.85
SMAD4-201ENST00000342988 MAATS1Q7Z4T9 603 aa20.36■□□□□ 0.85
SMAD4-201ENST00000342988 YEATS4O95619 227 aa20.35■□□□□ 0.85
SMAD4-201ENST00000342988 TMEM266Q2M3C6 531 aa20.35■□□□□ 0.85
SMAD4-201ENST00000342988 NUP133Q8WUM0 1156 aa20.35■□□□□ 0.85
SMAD4-201ENST00000342988 RSRC1Q96IZ7 334 aaKnown RBP20.35■□□□□ 0.85
SMAD4-201ENST00000342988 ERCC6LQ2NKX8 1250 aa20.34■□□□□ 0.85
SMAD4-201ENST00000342988 TOP1P11387 765 aaKnown RBP20.34■□□□□ 0.85
SMAD4-201ENST00000342988 GSDMDP57764 484 aa20.34■□□□□ 0.85
SMAD4-201ENST00000342988 KIAA0753Q2KHM9 967 aa20.34■□□□□ 0.85
SMAD4-201ENST00000342988 ATP2A1O14983 1001 aa20.34■□□□□ 0.85
SMAD4-201ENST00000342988 ALDH3A1P30838 453 aa20.33■□□□□ 0.85
SMAD4-201ENST00000342988 PRPHP41219 470 aa20.33■□□□□ 0.85
SMAD4-201ENST00000342988 CLIP2Q9UDT6 1046 aa20.33■□□□□ 0.85
SMAD4-201ENST00000342988 VCX3BQ9H321 246 aa20.33■□□□□ 0.84
SMAD4-201ENST00000342988 JAKMIP2Q96AA8 810 aa20.33■□□□□ 0.84
SMAD4-201ENST00000342988 PYM1Q9BRP8 204 aaKnown RBP20.33■□□□□ 0.84
SMAD4-201ENST00000342988 PPFIBP2Q8ND30 876 aa20.32■□□□□ 0.84
SMAD4-201ENST00000342988 MPHOSPH6Q99547 160 aaKnown RBP20.32■□□□□ 0.84
SMAD4-201ENST00000342988 CTAGE5O15320 804 aa20.32■□□□□ 0.84
SMAD4-201ENST00000342988 TUBB4BP68371 445 aa20.32■□□□□ 0.84
SMAD4-201ENST00000342988 EFCAB2Q5VUJ9 269 aa20.32■□□□□ 0.84
SMAD4-201ENST00000342988 GAS8O95995 478 aa20.32■□□□□ 0.84
SMAD4-201ENST00000342988 SELENOOQ9BVL4 669 aa20.32■□□□□ 0.84
SMAD4-201ENST00000342988 TDO2P48775 406 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 CCDC196A0A1B0GTZ2 297 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 VIMP08670 466 aaKnown RBP20.31■□□□□ 0.84
SMAD4-201ENST00000342988 SF3B2Q13435 895 aaKnown RBP20.31■□□□□ 0.84
SMAD4-201ENST00000342988 PPP6R1Q9UPN7 881 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 IRX3P78415 501 aaPredicted RBP20.31■□□□□ 0.84
SMAD4-201ENST00000342988 TBC1D5Q92609 795 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 CASQ2O14958 399 aaPredicted RBP20.31■□□□□ 0.84
SMAD4-201ENST00000342988 ANO10Q9NW15 660 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 RSPH3Q86UC2 560 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 GNAI2P04899 355 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 SH2D4BQ5SQS7 431 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 PANK3Q9H999 370 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 TNNT1P13805 278 aa20.31■□□□□ 0.84
SMAD4-201ENST00000342988 CUL5Q93034 780 aa20.3■□□□□ 0.84
SMAD4-201ENST00000342988 NUTM2FA1L443 756 aa20.3■□□□□ 0.84
SMAD4-201ENST00000342988 EXOC6Q8TAG9 804 aa20.3■□□□□ 0.84
SMAD4-201ENST00000342988 ZSCAN31Q96LW9 406 aaPredicted RBP20.3■□□□□ 0.84
SMAD4-201ENST00000342988 MGEA5O60502 916 aa20.3■□□□□ 0.84
SMAD4-201ENST00000342988 RAB3IPQ96QF0 476 aaPredicted RBP20.3■□□□□ 0.84
SMAD4-201ENST00000342988 CCDC77Q9BR77 488 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 PRC1O43663 620 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 OTUD6BQ8N6M0 293 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 MPHOSPH8Q99549 860 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 SYNCQ9H7C4 482 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 TMOD2Q9NZR1 351 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 RABGAP1Q9Y3P9 1069 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 GOLIM4O00461 696 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 CACYBPQ9HB71 228 aaKnown RBP20.29■□□□□ 0.84
SMAD4-201ENST00000342988 MYH10P35580 1976 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 HYPKQ9NX55 129 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 PRPF4BQ13523 1007 aaKnown RBP20.29■□□□□ 0.84
SMAD4-201ENST00000342988 CCDC144CPQ8IYA2 1237 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 GCC1Q96CN9 775 aa20.29■□□□□ 0.84
SMAD4-201ENST00000342988 AMPD3Q01432 767 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms