RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 C3P01024 1663 aa27.33■■□□□ 1.97
TRIM28-202ENST00000341753 ERC2O15083 957 aa27.33■■□□□ 1.97
TRIM28-202ENST00000341753 ZNF500O60304 480 aaPredicted RBP27.33■■□□□ 1.97
TRIM28-202ENST00000341753 RPAP2Q8IXW5 612 aaPredicted RBP27.33■■□□□ 1.97
TRIM28-202ENST00000341753 ZKSCAN5Q9Y2L8 839 aa27.33■■□□□ 1.97
TRIM28-202ENST00000341753 RTL1A6NKG5 1358 aa27.33■■□□□ 1.97
TRIM28-202ENST00000341753 ITSN1Q15811 1721 aa27.32■■□□□ 1.96
TRIM28-202ENST00000341753 TMX3Q96JJ7 454 aa27.32■■□□□ 1.96
TRIM28-202ENST00000341753 RGS12O14924 1447 aa27.32■■□□□ 1.96
TRIM28-202ENST00000341753 MPNDQ8N594 471 aa27.32■■□□□ 1.96
TRIM28-202ENST00000341753 AKAP12Q02952 1782 aa27.31■■□□□ 1.96
TRIM28-202ENST00000341753 DLG5Q8TDM6 1919 aa27.31■■□□□ 1.96
TRIM28-202ENST00000341753 PLEKHG1Q9ULL1 1385 aa27.31■■□□□ 1.96
TRIM28-202ENST00000341753 SLC4A10Q6U841 1118 aa27.3■■□□□ 1.96
TRIM28-202ENST00000341753 EID1Q9Y6B2 187 aa27.3■■□□□ 1.96
TRIM28-202ENST00000341753 KIF24Q5T7B8 1368 aa27.29■■□□□ 1.96
TRIM28-202ENST00000341753 TPRNQ4KMQ1 711 aa27.29■■□□□ 1.96
TRIM28-202ENST00000341753 MIS18AQ9NYP9 233 aa27.29■■□□□ 1.96
TRIM28-202ENST00000341753 NUTM2GQ5VZR2 741 aa27.28■■□□□ 1.96
TRIM28-202ENST00000341753 GDPD2Q9HCC8 539 aa27.28■■□□□ 1.96
TRIM28-202ENST00000341753 F6X3S4 739 aa27.27■■□□□ 1.96
TRIM28-202ENST00000341753 PALD1Q9ULE6 856 aa27.27■■□□□ 1.96
TRIM28-202ENST00000341753 USP6P35125 1406 aa27.27■■□□□ 1.96
TRIM28-202ENST00000341753 PLEKHG3A1L390 1219 aa27.26■■□□□ 1.96
TRIM28-202ENST00000341753 FOXO3O43524 673 aa27.26■■□□□ 1.96
TRIM28-202ENST00000341753 EXOC6BQ9Y2D4 811 aa27.26■■□□□ 1.96
TRIM28-202ENST00000341753 PDE1AP54750 535 aa27.26■■□□□ 1.95
TRIM28-202ENST00000341753 SLC4A2P04920 1241 aa27.25■■□□□ 1.95
TRIM28-202ENST00000341753 TERF1P54274 439 aa27.25■■□□□ 1.95
TRIM28-202ENST00000341753 PTMAP06454 111 aaKnown RBP27.25■■□□□ 1.95
TRIM28-202ENST00000341753 CCDC39Q9UFE4 941 aa27.25■■□□□ 1.95
TRIM28-202ENST00000341753 OVOS2A0A0J9YW53 1432 aa27.24■■□□□ 1.95
TRIM28-202ENST00000341753 OVOS2Q6IE36 1432 aa27.24■■□□□ 1.95
TRIM28-202ENST00000341753 NGDNQ8NEJ9 315 aaKnown RBP27.24■■□□□ 1.95
TRIM28-202ENST00000341753 G2E3Q7L622 706 aa27.23■■□□□ 1.95
TRIM28-202ENST00000341753 RBM33Q96EV2 1170 aaKnown RBP27.23■■□□□ 1.95
TRIM28-202ENST00000341753 MAP3K19Q56UN5 1328 aa27.23■■□□□ 1.95
TRIM28-202ENST00000341753 BRD1O95696 1058 aa27.21■■□□□ 1.95
TRIM28-202ENST00000341753 UPF3BQ9BZI7 483 aaKnown RBP27.21■■□□□ 1.95
TRIM28-202ENST00000341753 PEAK1Q9H792 1746 aa27.21■■□□□ 1.95
TRIM28-202ENST00000341753 GADD45BO75293 160 aaPredicted RBP27.21■■□□□ 1.95
TRIM28-202ENST00000341753 MBD3O95983 291 aa27.21■■□□□ 1.95
TRIM28-202ENST00000341753 ANO2Q9NQ90 1003 aa27.21■■□□□ 1.95
TRIM28-202ENST00000341753 RILPL2Q969X0 211 aa27.2■■□□□ 1.95
TRIM28-202ENST00000341753 CHL1O00533 1208 aa27.2■■□□□ 1.94
TRIM28-202ENST00000341753 TSPY26PQ9H489 355 aa27.2■■□□□ 1.94
TRIM28-202ENST00000341753 ESYT1Q9BSJ8 1104 aa27.19■■□□□ 1.94
TRIM28-202ENST00000341753 JARID2Q92833 1246 aaPredicted RBP27.18■■□□□ 1.94
TRIM28-202ENST00000341753 NRKQ7Z2Y5 1582 aa27.18■■□□□ 1.94
TRIM28-202ENST00000341753 TRIM6-TRIM34B2RNG4 842 aa27.18■■□□□ 1.94
TRIM28-202ENST00000341753 HMMRO75330 724 aa27.18■■□□□ 1.94
TRIM28-202ENST00000341753 CSPP1Q1MSJ5 1256 aa27.18■■□□□ 1.94
TRIM28-202ENST00000341753 ZNF830Q96NB3 372 aaPredicted RBP27.18■■□□□ 1.94
TRIM28-202ENST00000341753 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP27.17■■□□□ 1.943e-12■□□□□ 10.7
TRIM28-202ENST00000341753 PTPRCP08575 1304 aa27.16■■□□□ 1.94
TRIM28-202ENST00000341753 TOPAZ1Q8N9V7 1692 aa27.16■■□□□ 1.94
TRIM28-202ENST00000341753 KCNA6P17658 529 aa27.16■■□□□ 1.94
TRIM28-202ENST00000341753 MCM5P33992 734 aa27.15■■□□□ 1.94
TRIM28-202ENST00000341753 MTHFSDQ2M296 383 aaKnown RBP27.15■■□□□ 1.94
TRIM28-202ENST00000341753 RGPD8O14715 1765 aaPredicted RBP27.15■■□□□ 1.94
TRIM28-202ENST00000341753 SASS6Q6UVJ0 657 aa27.14■■□□□ 1.94
TRIM28-202ENST00000341753 OSBPL3Q9H4L5 887 aa27.14■■□□□ 1.94
TRIM28-202ENST00000341753 TBX22Q9Y458 520 aa27.14■■□□□ 1.94
TRIM28-202ENST00000341753 AMPHP49418 695 aa27.14■■□□□ 1.93
TRIM28-202ENST00000341753 CUL4AQ13619 759 aa27.13■■□□□ 1.93
TRIM28-202ENST00000341753 RIMS1Q86UR5 1692 aaKnown RBP27.13■■□□□ 1.93
TRIM28-202ENST00000341753 DNTTIP2Q5QJE6 756 aaKnown RBP27.13■■□□□ 1.93
TRIM28-202ENST00000341753 NLRP6P59044 892 aa27.12■■□□□ 1.93
TRIM28-202ENST00000341753 SSH2Q76I76 1423 aa27.12■■□□□ 1.93
TRIM28-202ENST00000341753 USP48Q86UV5 1035 aa27.12■■□□□ 1.93
TRIM28-202ENST00000341753 UNC5CLQ8IV45 518 aa27.12■■□□□ 1.93
TRIM28-202ENST00000341753 TSC1Q92574 1164 aa27.12■■□□□ 1.93
TRIM28-202ENST00000341753 LTV1Q96GA3 475 aaPredicted RBP27.12■■□□□ 1.93
TRIM28-202ENST00000341753 USP31Q70CQ4 1352 aa27.12■■□□□ 1.93
TRIM28-202ENST00000341753 MCCP23508 829 aa27.11■■□□□ 1.93
TRIM28-202ENST00000341753 HAP1P54257 671 aaPredicted RBP27.11■■□□□ 1.93
TRIM28-202ENST00000341753 DYNC1I1O14576 645 aa27.11■■□□□ 1.93
TRIM28-202ENST00000341753 TRHP20396 242 aaPredicted RBP27.11■■□□□ 1.93
TRIM28-202ENST00000341753 MX1P20591 662 aa27.11■■□□□ 1.93
TRIM28-202ENST00000341753 CHMLP26374 656 aa27.11■■□□□ 1.93
TRIM28-202ENST00000341753 THEMISQ8N1K5 641 aaPredicted RBP27.11■■□□□ 1.93
TRIM28-202ENST00000341753 C17orf53Q8N3J3 647 aaPredicted RBP27.11■■□□□ 1.93
TRIM28-202ENST00000341753 NECTIN2Q92692 538 aa27.11■■□□□ 1.93
TRIM28-202ENST00000341753 EYA1Q99502 592 aa27.11■■□□□ 1.93
TRIM28-202ENST00000341753 PNMA6EA0A0J9YXQ4 647 aa27.1■■□□□ 1.93
TRIM28-202ENST00000341753 KIAA2012Q0VF49 1180 aa27.1■■□□□ 1.93
TRIM28-202ENST00000341753 MAP7D2Q96T17 732 aa27.1■■□□□ 1.93
TRIM28-202ENST00000341753 IL25Q9H293 177 aa27.1■■□□□ 1.93
TRIM28-202ENST00000341753 LARP6Q9BRS8 491 aaKnown RBP27.1■■□□□ 1.93
TRIM28-202ENST00000341753 USP25Q9UHP3 1055 aa27.1■■□□□ 1.93
TRIM28-202ENST00000341753 DTNBO60941 627 aa27.1■■□□□ 1.93
TRIM28-202ENST00000341753 PLEKHG5O94827 1062 aa27.1■■□□□ 1.93
TRIM28-202ENST00000341753 MCM2P49736 904 aa27.1■■□□□ 1.93
TRIM28-202ENST00000341753 C14orf37Q86TY3 774 aa27.1■■□□□ 1.93
TRIM28-202ENST00000341753 LRRCC1Q9C099 1032 aa27.09■■□□□ 1.93
TRIM28-202ENST00000341753 GNAI2P04899 355 aa27.09■■□□□ 1.93
TRIM28-202ENST00000341753 SYAP1Q96A49 352 aaPredicted RBP27.09■■□□□ 1.93
TRIM28-202ENST00000341753 KIAA0232Q92628 1395 aa27.08■■□□□ 1.93
TRIM28-202ENST00000341753 DIP2AQ14689 1571 aa27.07■■□□□ 1.92
TRIM28-202ENST00000341753 MAP4K4O95819 1239 aaPredicted RBP27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms