RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 HDGFL1Q5TGJ6 251 aa12.83□□□□□ -0.36
LIMA1-201ENST00000341247 MAP3K5Q99683 1374 aa12.83□□□□□ -0.36
LIMA1-201ENST00000341247 TTC22Q5TAA0 569 aa12.83□□□□□ -0.36
LIMA1-201ENST00000341247 RBM25P49756 843 aaKnown RBP12.82□□□□□ -0.36
LIMA1-201ENST00000341247 CCT4P50991 539 aaKnown RBP12.82□□□□□ -0.36
LIMA1-201ENST00000341247 IP6K1Q92551 441 aa12.82□□□□□ -0.36
LIMA1-201ENST00000341247 PNMA6EA0A0J9YXQ4 647 aa12.81□□□□□ -0.36
LIMA1-201ENST00000341247 GNAI2P04899 355 aa12.81□□□□□ -0.36
LIMA1-201ENST00000341247 SDSP20132 328 aa12.81□□□□□ -0.36
LIMA1-201ENST00000341247 KIF2CQ99661 725 aa12.81□□□□□ -0.36
LIMA1-201ENST00000341247 ZNF530Q6P9A1 599 aaPredicted RBP12.81□□□□□ -0.36
LIMA1-201ENST00000341247 LRRFIP2Q9Y608 721 aaKnown RBP12.81□□□□□ -0.36
LIMA1-201ENST00000341247 HMMRO75330 724 aa12.8□□□□□ -0.36
LIMA1-201ENST00000341247 ZC3H6P61129 1189 aaKnown RBP12.8□□□□□ -0.36
LIMA1-201ENST00000341247 RGPD5Q99666 1765 aa12.8□□□□□ -0.36
LIMA1-201ENST00000341247 PROSER2Q86WR7 435 aaPredicted RBP12.8□□□□□ -0.36
LIMA1-201ENST00000341247 PXDNQ92626 1479 aa12.8□□□□□ -0.36
LIMA1-201ENST00000341247 CHMP5Q9NZZ3 219 aa12.8□□□□□ -0.36
LIMA1-201ENST00000341247 GCP02774 474 aa12.79□□□□□ -0.36
LIMA1-201ENST00000341247 HSPA2P54652 639 aa12.79□□□□□ -0.36
LIMA1-201ENST00000341247 KIF24Q5T7B8 1368 aa12.79□□□□□ -0.36
LIMA1-201ENST00000341247 TEFQ10587 303 aa12.79□□□□□ -0.36
LIMA1-201ENST00000341247 IL1RAPL2Q9NP60 686 aa12.78□□□□□ -0.36
LIMA1-201ENST00000341247 CHPF2Q9P2E5 772 aa12.78□□□□□ -0.36
LIMA1-201ENST00000341247 TRPM3Q9HCF6 1732 aaPredicted RBP12.78□□□□□ -0.36
LIMA1-201ENST00000341247 HTATSF1O43719 755 aaKnown RBP12.78□□□□□ -0.36
LIMA1-201ENST00000341247 BTBD11A6QL63 1104 aa12.77□□□□□ -0.37
LIMA1-201ENST00000341247 MCM4P33991 863 aa12.77□□□□□ -0.37
LIMA1-201ENST00000341247 FAM208AQ9UK61 1670 aaKnown RBP12.77□□□□□ -0.37
LIMA1-201ENST00000341247 RILPL2Q969X0 211 aa12.77□□□□□ -0.37
LIMA1-201ENST00000341247 PRAMEF22A3QJZ6 481 aa12.76□□□□□ -0.37
LIMA1-201ENST00000341247 TRIM6-TRIM34B2RNG4 842 aa12.76□□□□□ -0.37
LIMA1-201ENST00000341247 UBTFL1P0CB47 393 aaPredicted RBP12.76□□□□□ -0.37
LIMA1-201ENST00000341247 ANKRD24Q8TF21 1146 aa12.76□□□□□ -0.37
LIMA1-201ENST00000341247 PDE1AP54750 535 aa12.76□□□□□ -0.37
LIMA1-201ENST00000341247 KCNH5Q8NCM2 988 aa12.76□□□□□ -0.37
LIMA1-201ENST00000341247 CABLES1Q8TDN4 633 aa12.76□□□□□ -0.37
LIMA1-201ENST00000341247 USP44Q9H0E7 712 aa12.76□□□□□ -0.37
LIMA1-201ENST00000341247 GNAI3P08754 354 aa12.76□□□□□ -0.37
LIMA1-201ENST00000341247 KRT28Q7Z3Y7 464 aa12.76□□□□□ -0.37
LIMA1-201ENST00000341247 MED1Q15648 1581 aaPredicted RBP12.75□□□□□ -0.37
LIMA1-201ENST00000341247 PI4KAP2A4QPH2 592 aa12.75□□□□□ -0.37
LIMA1-201ENST00000341247 MAP4K4O95819 1239 aaPredicted RBP12.75□□□□□ -0.37
LIMA1-201ENST00000341247 C1orf141Q5JVX7 400 aa12.75□□□□□ -0.37
LIMA1-201ENST00000341247 ARHGEF25Q86VW2 580 aa12.75□□□□□ -0.37
LIMA1-201ENST00000341247 PI4KAP1Q8N8J0 262 aa12.75□□□□□ -0.37
LIMA1-201ENST00000341247 C1orf167Q5SNV9 1468 aa12.75□□□□□ -0.37
LIMA1-201ENST00000341247 EIF4A1P60842 406 aaKnown RBP12.75□□□□□ -0.37
LIMA1-201ENST00000341247 LRRCC1Q9C099 1032 aa12.75□□□□□ -0.37
LIMA1-201ENST00000341247 DNAJC5Q9H3Z4 198 aa12.75□□□□□ -0.37
LIMA1-201ENST00000341247 CASC1Q6TDU7 716 aa12.75□□□□□ -0.37
LIMA1-201ENST00000341247 NUTM1Q86Y26 1132 aa12.75□□□□□ -0.37
LIMA1-201ENST00000341247 K7ELQ4 463 aaPredicted RBP12.74□□□□□ -0.37
LIMA1-201ENST00000341247 PLEKHO1Q53GL0 409 aaPredicted RBP12.74□□□□□ -0.37
LIMA1-201ENST00000341247 SNX21Q969T3 373 aa12.74□□□□□ -0.37
LIMA1-201ENST00000341247 USP26Q9BXU7 913 aa12.74□□□□□ -0.37
LIMA1-201ENST00000341247 NBPF7P0C2Y1 421 aaPredicted RBP12.74□□□□□ -0.37
LIMA1-201ENST00000341247 CEMIPQ8WUJ3 1361 aa12.74□□□□□ -0.37
LIMA1-201ENST00000341247 SURF6O75683 361 aaKnown RBP12.74□□□□□ -0.37
LIMA1-201ENST00000341247 ATP8B2P98198 1209 aa12.74□□□□□ -0.37
LIMA1-201ENST00000341247 SRCIN1Q9C0H9 1055 aa12.74□□□□□ -0.37
LIMA1-201ENST00000341247 AIMP1Q12904 312 aaKnown RBP12.73□□□□□ -0.37
LIMA1-201ENST00000341247 NOL8Q76FK4 1167 aaKnown RBP12.73□□□□□ -0.37
LIMA1-201ENST00000341247 PPP1R42Q7Z4L9 355 aa12.73□□□□□ -0.37
LIMA1-201ENST00000341247 TNPO1Q92973 898 aaKnown RBP12.73□□□□□ -0.37
LIMA1-201ENST00000341247 NLRP2Q9NX02 1062 aa12.73□□□□□ -0.37
LIMA1-201ENST00000341247 SLIT3O75094 1523 aa12.73□□□□□ -0.37
LIMA1-201ENST00000341247 PROSER3Q2NL68 480 aa12.73□□□□□ -0.37
LIMA1-201ENST00000341247 TMEM94Q12767 1356 aa12.72□□□□□ -0.37
LIMA1-201ENST00000341247 MX1P20591 662 aa12.72□□□□□ -0.37
LIMA1-201ENST00000341247 SLC39A6Q13433 755 aa12.72□□□□□ -0.37
LIMA1-201ENST00000341247 SRGAP3O43295 1099 aa12.72□□□□□ -0.37
LIMA1-201ENST00000341247 TRAK2O60296 914 aa12.72□□□□□ -0.37
LIMA1-201ENST00000341247 PHRF1Q9P1Y6 1649 aaKnown RBP12.72□□□□□ -0.37
LIMA1-201ENST00000341247 CHRNA2Q15822 529 aa12.72□□□□□ -0.37
LIMA1-201ENST00000341247 AKAP4Q5JQC9 854 aa12.72□□□□□ -0.37
LIMA1-201ENST00000341247 RNMTO43148 476 aaKnown RBP12.71□□□□□ -0.37
LIMA1-201ENST00000341247 UNC5CLQ8IV45 518 aa12.71□□□□□ -0.37
LIMA1-201ENST00000341247 MST1RQ04912 1400 aa12.71□□□□□ -0.37
LIMA1-201ENST00000341247 CSB-PGBD3P0DP91 1061 aa12.71□□□□□ -0.37
LIMA1-201ENST00000341247 SSFA2P28290 1259 aa12.71□□□□□ -0.37
LIMA1-201ENST00000341247 DNAAF4Q8WXU2 420 aa12.71□□□□□ -0.37
LIMA1-201ENST00000341247 ALS2Q96Q42 1657 aa12.71□□□□□ -0.38
LIMA1-201ENST00000341247 PIP4K2AP48426 406 aaPredicted RBP12.7□□□□□ -0.38
LIMA1-201ENST00000341247 ERC2O15083 957 aa12.7□□□□□ -0.38
LIMA1-201ENST00000341247 OS9Q13438 667 aaPredicted RBP12.7□□□□□ -0.38
LIMA1-201ENST00000341247 ANO2Q9NQ90 1003 aa12.7□□□□□ -0.38
LIMA1-201ENST00000341247 XIRP1Q702N8 1843 aaKnown RBP12.7□□□□□ -0.38
LIMA1-201ENST00000341247 CWF19L2Q2TBE0 894 aaKnown RBP12.7□□□□□ -0.38
LIMA1-201ENST00000341247 FOXD4L5Q5VV16 416 aaPredicted RBP12.7□□□□□ -0.38
LIMA1-201ENST00000341247 FOXD4L4Q8WXT5 416 aaPredicted RBP12.7□□□□□ -0.38
LIMA1-201ENST00000341247 KDM3BQ7LBC6 1761 aa12.69□□□□□ -0.38
LIMA1-201ENST00000341247 RABEP1Q15276 862 aa12.69□□□□□ -0.38
LIMA1-201ENST00000341247 REC8O95072 547 aa12.69□□□□□ -0.38
LIMA1-201ENST00000341247 C19orf44Q9H6X5 657 aa12.69□□□□□ -0.38
LIMA1-201ENST00000341247 MAP3K2Q9Y2U5 619 aa12.69□□□□□ -0.38
LIMA1-201ENST00000341247 ATF3P18847 181 aa12.69□□□□□ -0.38
LIMA1-201ENST00000341247 LMO7Q8WWI1 1683 aa12.68□□□□□ -0.38
LIMA1-201ENST00000341247 NCAPD2Q15021 1401 aa12.68□□□□□ -0.38
LIMA1-201ENST00000341247 C9orf78Q9NZ63 289 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms