RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PRR36Q9H6K5 1346 aa14.4□□□□□ -0.1
USP1-201ENST00000339950 ZFYVE16Q7Z3T8 1539 aa14.4□□□□□ -0.1
USP1-201ENST00000339950 NBPF7P0C2Y1 421 aaPredicted RBP14.4□□□□□ -0.1
USP1-201ENST00000339950 RBSNQ9H1K0 784 aa14.4□□□□□ -0.1
USP1-201ENST00000339950 ZNF592Q92610 1267 aa14.4□□□□□ -0.1
USP1-201ENST00000339950 RIMS2Q9UQ26 1411 aa14.4□□□□□ -0.1
USP1-201ENST00000339950 ATP5J2-PTCD1G3V325 749 aa14.4□□□□□ -0.1
USP1-201ENST00000339950 PTCD1O75127 700 aaKnown RBP14.4□□□□□ -0.1
USP1-201ENST00000339950 GORABQ5T7V8 394 aa14.4□□□□□ -0.1
USP1-201ENST00000339950 RAB11FIP4Q86YS3 637 aa14.4□□□□□ -0.1
USP1-201ENST00000339950 CIZ1Q9ULV3 898 aaPredicted RBP14.4□□□□□ -0.1
USP1-201ENST00000339950 PODXL2Q9NZ53 605 aa14.39□□□□□ -0.11
USP1-201ENST00000339950 PTMSP20962 102 aa14.39□□□□□ -0.11
USP1-201ENST00000339950 CHMP4CQ96CF2 233 aa14.39□□□□□ -0.11
USP1-201ENST00000339950 SYAP1Q96A49 352 aaPredicted RBP14.39□□□□□ -0.11
USP1-201ENST00000339950 BICD2Q8TD16 824 aa14.38□□□□□ -0.11
USP1-201ENST00000339950 ARHGAP45Q92619 1136 aa14.38□□□□□ -0.11
USP1-201ENST00000339950 CNPY2Q9Y2B0 182 aa14.38□□□□□ -0.11
USP1-201ENST00000339950 GADD45BO75293 160 aaPredicted RBP14.38□□□□□ -0.11
USP1-201ENST00000339950 TSC1Q92574 1164 aa14.38□□□□□ -0.11
USP1-201ENST00000339950 ERBB4Q15303 1308 aa14.38□□□□□ -0.11
USP1-201ENST00000339950 CABLES1Q8TDN4 633 aa14.38□□□□□ -0.11
USP1-201ENST00000339950 CHL1O00533 1208 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 ZKSCAN1P17029 563 aaPredicted RBP14.37□□□□□ -0.11
USP1-201ENST00000339950 GUCY1B3Q02153 619 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 CKAP2LQ8IYA6 745 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 CNTROBQ8N137 903 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 DDX17Q92841 729 aaKnown RBP14.37□□□□□ -0.11
USP1-201ENST00000339950 SNX21Q969T3 373 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 EDC3Q96F86 508 aaKnown RBP14.37□□□□□ -0.11
USP1-201ENST00000339950 PRDM10Q9NQV6 1147 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 KAT6BQ8WYB5 2073 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 HCLS1P14317 486 aaPredicted RBP14.37□□□□□ -0.11
USP1-201ENST00000339950 KCNA6P17658 529 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 CHRNA2Q15822 529 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 GIMAP6Q6P9H5 292 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 ESYT1Q9BSJ8 1104 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 H3BQV1 296 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 IFFO2Q5TF58 517 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 KIF2CQ99661 725 aa14.37□□□□□ -0.11
USP1-201ENST00000339950 PRAMEF22A3QJZ6 481 aa14.36□□□□□ -0.11
USP1-201ENST00000339950 CLCN1P35523 988 aa14.36□□□□□ -0.11
USP1-201ENST00000339950 GPATCH3Q96I76 525 aa14.36□□□□□ -0.11
USP1-201ENST00000339950 ZRSR1Q15695 479 aaKnown RBP14.36□□□□□ -0.11
USP1-201ENST00000339950 FMNL2Q96PY5 1086 aa14.36□□□□□ -0.11
USP1-201ENST00000339950 NPHP1O15259 732 aa14.36□□□□□ -0.11
USP1-201ENST00000339950 CCDC173Q0VFZ6 552 aa14.36□□□□□ -0.11
USP1-201ENST00000339950 MAP3K2Q9Y2U5 619 aa14.36□□□□□ -0.11
USP1-201ENST00000339950 MAPK8IP2Q13387 824 aaPredicted RBP14.35□□□□□ -0.11
USP1-201ENST00000339950 RHPN1Q8TCX5 695 aa14.35□□□□□ -0.11
USP1-201ENST00000339950 SYTL4Q96C24 671 aaPredicted RBP14.35□□□□□ -0.11
USP1-201ENST00000339950 TSPY26PQ9H489 355 aa14.35□□□□□ -0.11
USP1-201ENST00000339950 KLHL40Q2TBA0 621 aa14.35□□□□□ -0.11
USP1-201ENST00000339950 TTC12Q9H892 705 aaPredicted RBP14.35□□□□□ -0.11
USP1-201ENST00000339950 TMEM63CQ9P1W3 806 aa14.35□□□□□ -0.11
USP1-201ENST00000339950 SBNO2Q9Y2G9 1366 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 FSD2A1L4K1 749 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 ABCA6Q8N139 1617 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 FAM184AQ8NB25 1140 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 IL17REQ8NFR9 667 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 TOMM22Q9NS69 142 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 ABCC4O15439 1325 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 PLXNC1O60486 1568 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 NEXNQ0ZGT2 675 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 DNAAF4Q8WXU2 420 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 RAPGEF4Q8WZA2 1011 aa14.34□□□□□ -0.11
USP1-201ENST00000339950 CHMLP26374 656 aa14.33□□□□□ -0.11
USP1-201ENST00000339950 USP48Q86UV5 1035 aa14.33□□□□□ -0.11
USP1-201ENST00000339950 ZSCAN30Q86W11 494 aa14.33□□□□□ -0.11
USP1-201ENST00000339950 CHAF1AQ13111 956 aaPredicted RBP14.33□□□□□ -0.12
USP1-201ENST00000339950 TAF7LQ5H9L4 462 aa14.33□□□□□ -0.12
USP1-201ENST00000339950 LARP1BQ659C4 914 aaKnown RBP14.33□□□□□ -0.12
USP1-201ENST00000339950 TTC5Q8N0Z6 440 aa14.33□□□□□ -0.12
USP1-201ENST00000339950 ZBTB9Q96C00 473 aa14.33□□□□□ -0.12
USP1-201ENST00000339950 SETD1BQ9UPS6 1966 aaKnown RBP14.33□□□□□ -0.12
USP1-201ENST00000339950 PDRG1Q9NUG6 133 aa14.32□□□□□ -0.12
USP1-201ENST00000339950 SNRKQ9NRH2 765 aa14.32□□□□□ -0.12
USP1-201ENST00000339950 LMBRD1Q9NUN5 540 aa14.32□□□□□ -0.12
USP1-201ENST00000339950 RTL1A6NKG5 1358 aa14.32□□□□□ -0.12
USP1-201ENST00000339950 CHST3Q7LGC8 479 aa14.32□□□□□ -0.12
USP1-201ENST00000339950 MYD88Q99836 296 aa14.32□□□□□ -0.12
USP1-201ENST00000339950 CWC22Q9HCG8 908 aaKnown RBP14.32□□□□□ -0.12
USP1-201ENST00000339950 MAP3K4Q9Y6R4 1608 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 UQCRHLA0A096LP55 91 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 RAB11FIP3O75154 756 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 UQCRHP07919 91 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 DNM1Q05193 864 aaKnown RBP14.31□□□□□ -0.12
USP1-201ENST00000339950 GPT2Q8TD30 523 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 STRN4Q9NRL3 753 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 PHF8Q9UPP1 1060 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 ZMYM3Q14202 1370 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 ATP8B2P98198 1209 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 RUFY2Q8WXA3 655 aa14.31□□□□□ -0.12
USP1-201ENST00000339950 PTPRCP08575 1304 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 RRP9O43818 475 aaKnown RBP14.3□□□□□ -0.12
USP1-201ENST00000339950 AK2P54819 239 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 HSP90AB3PQ58FF7 597 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 USP44Q9H0E7 712 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 KIF1BPQ96EK5 621 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 ORAI2Q96SN7 254 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms