RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SYCP2Q9BX26 1530 aa12.07□□□□□ -0.48
CCDC88A-202ENST00000336838 UBE2HP62256 183 aa12.07□□□□□ -0.48
CCDC88A-202ENST00000336838 AFAP1Q8N556 730 aa12.07□□□□□ -0.48
CCDC88A-202ENST00000336838 TBC1D2Q9BYX2 928 aa12.07□□□□□ -0.48
CCDC88A-202ENST00000336838 CT47A1Q5JQC4 288 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-202ENST00000336838 CCDC61Q9Y6R9 512 aa12.07□□□□□ -0.48
CCDC88A-202ENST00000336838 FANCAO15360 1455 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 CCAR1Q8IX12 1150 aaKnown RBP12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 LIMCH1Q9UPQ0 1083 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 CDK5RAP3Q96JB5 506 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 GNAT3A8MTJ3 354 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 IMMTQ16891 758 aaKnown RBP12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 AMOTQ4VCS5 1084 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 UBXN4Q92575 508 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 SPG7Q9UQ90 795 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 ABTB2Q8N961 1025 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 KCNH5Q8NCM2 988 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 BLMP54132 1417 aaPredicted RBP12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 SYCE3A1L190 88 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 THEMISQ8N1K5 641 aaPredicted RBP12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 PTPN14Q15678 1187 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 ATF3P18847 181 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 TMEM132EQ6IEE7 984 aa12.06□□□□□ -0.48
CCDC88A-202ENST00000336838 CASTP20810 708 aaKnown RBP12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 FMNL2Q96PY5 1086 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 MSH5O43196 834 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 AMER1Q5JTC6 1135 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 ZNF397Q8NF99 534 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 CCDC148Q8NFR7 591 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 SSH1Q8WYL5 1049 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 SRGAP3O43295 1099 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 TNPO1Q92973 898 aaKnown RBP12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 CCDC171Q6TFL3 1326 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 AKAP2Q9Y2D5 859 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 ZNF518AQ6AHZ1 1483 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 ODF2Q5BJF6 829 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 NUP153P49790 1475 aaKnown RBP12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 TRHP20396 242 aaPredicted RBP12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 STX1AQ16623 288 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 CCDC57Q2TAC2 916 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 SULT6B1Q6IMI4 303 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 NUCB1Q02818 461 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 TMCO3Q6UWJ1 677 aa12.05□□□□□ -0.48
CCDC88A-202ENST00000336838 ZSCAN16Q9H4T2 348 aaPredicted RBP12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 TTC39AQ5SRH9 613 aa12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 ANKRD18AQ8IVF6 992 aa12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 EHBP1Q8NDI1 1231 aa12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 CCDC150Q8NCX0 1101 aa12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 ZNF287Q9HBT7 754 aa12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 INCENPQ9NQS7 918 aa12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 CABP1Q9NZU7 370 aa12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 CCDC69A6NI79 296 aa12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 FGFR1OPO95684 399 aaKnown RBP12.04□□□□□ -0.48
CCDC88A-202ENST00000336838 TRIM27P14373 513 aa12.03□□□□□ -0.48
CCDC88A-202ENST00000336838 AXDND1Q5T1B0 1012 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-202ENST00000336838 AACSQ86V21 672 aa12.03□□□□□ -0.48
CCDC88A-202ENST00000336838 DEF6Q9H4E7 631 aa12.03□□□□□ -0.48
CCDC88A-202ENST00000336838 JAKMIP3Q5VZ66 844 aa12.03□□□□□ -0.48
CCDC88A-202ENST00000336838 JAKMIP1Q96N16 626 aaKnown RBP12.03□□□□□ -0.48
CCDC88A-202ENST00000336838 TATP17735 454 aaPredicted RBP12.03□□□□□ -0.48
CCDC88A-202ENST00000336838 SPC24Q8NBT2 197 aa12.03□□□□□ -0.48
CCDC88A-202ENST00000336838 KANK3Q6NY19 840 aa12.02□□□□□ -0.48
CCDC88A-202ENST00000336838 GTPBP4Q9BZE4 634 aaKnown RBP12.02□□□□□ -0.48
CCDC88A-202ENST00000336838 PIK3R4Q99570 1358 aa12.02□□□□□ -0.48
CCDC88A-202ENST00000336838 DISP3Q9P2K9 1392 aa12.02□□□□□ -0.48
CCDC88A-202ENST00000336838 EPB41L2O43491 1005 aaKnown RBP12.02□□□□□ -0.48
CCDC88A-202ENST00000336838 HYPKQ9NX55 129 aa12.02□□□□□ -0.48
CCDC88A-202ENST00000336838 ABCC2Q92887 1545 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 SRRTQ9BXP5 876 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 CCDC181Q5TID7 509 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 C1orf115Q9H7X2 142 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 KIF5CO60282 957 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 TUBBP07437 444 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 ARHGAP29Q52LW3 1261 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 KLHL34Q8N239 644 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 RBM33Q96EV2 1170 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 RBM25P49756 843 aaKnown RBP12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 KDM5CP41229 1560 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 TERF1P54274 439 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 EVI5LQ96CN4 794 aa12.02□□□□□ -0.49
CCDC88A-202ENST00000336838 NECTIN2Q92692 538 aa12.01□□□□□ -0.49
CCDC88A-202ENST00000336838 LARP1Q6PKG0 1096 aaKnown RBP12.01□□□□□ -0.49
CCDC88A-202ENST00000336838 CTDP1Q9Y5B0 961 aaPredicted RBP12.01□□□□□ -0.49
CCDC88A-202ENST00000336838 NUTM2FA1L443 756 aa12.01□□□□□ -0.49
CCDC88A-202ENST00000336838 SYCP1Q15431 976 aa12.01□□□□□ -0.49
CCDC88A-202ENST00000336838 CCDC184Q52MB2 194 aa12.01□□□□□ -0.49
CCDC88A-202ENST00000336838 TTC22Q5TAA0 569 aa12.01□□□□□ -0.49
CCDC88A-202ENST00000336838 INTS4Q96HW7 963 aaKnown RBP12.01□□□□□ -0.49
CCDC88A-202ENST00000336838 LRSAM1Q6UWE0 723 aa12□□□□□ -0.49
CCDC88A-202ENST00000336838 CLASP1Q7Z460 1538 aa12□□□□□ -0.49
CCDC88A-202ENST00000336838 DNAJC2Q99543 621 aaKnown RBP12□□□□□ -0.49
CCDC88A-202ENST00000336838 BMP2KQ9NSY1 1161 aaPredicted RBP12□□□□□ -0.49
CCDC88A-202ENST00000336838 ATL3Q6DD88 541 aa12□□□□□ -0.49
CCDC88A-202ENST00000336838 TBC1D9Q6ZT07 1266 aa12□□□□□ -0.49
CCDC88A-202ENST00000336838 MICALCLQ6ZW33 695 aa12□□□□□ -0.49
CCDC88A-202ENST00000336838 BAG4O95429 457 aaKnown RBP11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 HSP90AB2PQ58FF8 381 aa11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 SMC5Q8IY18 1101 aa11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 CRACR2AQ9BSW2 395 aa11.99□□□□□ -0.49
CCDC88A-202ENST00000336838 NLRP2Q9NX02 1062 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms