RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 ACEP12821 1306 aa12.03□□□□□ -0.48
CHD3-201ENST00000330494 PIP4K2AP48426 406 aaPredicted RBP12.03□□□□□ -0.48
CHD3-201ENST00000330494 SOGA3Q5TF21 947 aa12.02□□□□□ -0.48
CHD3-201ENST00000330494 FERMT3Q86UX7 667 aa12.02□□□□□ -0.48
CHD3-201ENST00000330494 DCAF8L1A6NGE4 600 aa12.02□□□□□ -0.48
CHD3-201ENST00000330494 TRMT112Q9UI30 125 aaKnown RBP12.02□□□□□ -0.48
CHD3-201ENST00000330494 RAPGEF6Q8TEU7 1601 aa12.02□□□□□ -0.48
CHD3-201ENST00000330494 BIVM-ERCC5R4GMW8 1640 aa12.02□□□□□ -0.48
CHD3-201ENST00000330494 PPFIA3O75145 1194 aa12.02□□□□□ -0.49
CHD3-201ENST00000330494 MX1P20591 662 aa12.02□□□□□ -0.49
CHD3-201ENST00000330494 KIF1BPQ96EK5 621 aa12.02□□□□□ -0.49
CHD3-201ENST00000330494 NKTRP30414 1462 aaKnown RBP12.02□□□□□ -0.49
CHD3-201ENST00000330494 CAMK4Q16566 473 aa12.02□□□□□ -0.49
CHD3-201ENST00000330494 LARP1Q6PKG0 1096 aaKnown RBP12.02□□□□□ -0.49
CHD3-201ENST00000330494 TANGO6Q9C0B7 1094 aa12.02□□□□□ -0.49
CHD3-201ENST00000330494 IFIT1P09914 478 aaKnown RBP12.02□□□□□ -0.49
CHD3-201ENST00000330494 MAPK8IP2Q13387 824 aaPredicted RBP12.02□□□□□ -0.49
CHD3-201ENST00000330494 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.01□□□□□ -0.49
CHD3-201ENST00000330494 DENND4BO75064 1496 aaPredicted RBP12.01□□□□□ -0.49
CHD3-201ENST00000330494 RPAP2Q8IXW5 612 aaPredicted RBP12.01□□□□□ -0.49
CHD3-201ENST00000330494 FILIP1LQ4L180 1135 aa12.01□□□□□ -0.49
CHD3-201ENST00000330494 AEBP1Q8IUX7 1158 aa12.01□□□□□ -0.49
CHD3-201ENST00000330494 SPATA32Q96LK8 384 aa12.01□□□□□ -0.49
CHD3-201ENST00000330494 RUFY1Q96T51 708 aa12.01□□□□□ -0.49
CHD3-201ENST00000330494 WDR33Q9C0J8 1336 aaKnown RBP12.01□□□□□ -0.49
CHD3-201ENST00000330494 LETM1O95202 739 aaPredicted RBP12.01□□□□□ -0.49
CHD3-201ENST00000330494 MBD3O95983 291 aa12.01□□□□□ -0.49
CHD3-201ENST00000330494 IMMTQ16891 758 aaKnown RBP12.01□□□□□ -0.49
CHD3-201ENST00000330494 ZRANB1Q9UGI0 708 aa12.01□□□□□ -0.49
CHD3-201ENST00000330494 ACSBG1Q96GR2 724 aa12.01□□□□□ -0.49
CHD3-201ENST00000330494 CTTNBP2Q8WZ74 1663 aa12□□□□□ -0.49
CHD3-201ENST00000330494 A0A087WZG4 1122 aa12□□□□□ -0.49
CHD3-201ENST00000330494 KRT85P78386 507 aa12□□□□□ -0.49
CHD3-201ENST00000330494 POLR3DP05423 398 aaPredicted RBP12□□□□□ -0.49
CHD3-201ENST00000330494 TRIM27P14373 513 aa12□□□□□ -0.49
CHD3-201ENST00000330494 CHMP4BP1P59074 171 aa12□□□□□ -0.49
CHD3-201ENST00000330494 ZNF652Q9Y2D9 606 aa12□□□□□ -0.49
CHD3-201ENST00000330494 IFIT5Q13325 482 aaKnown RBP12□□□□□ -0.49
CHD3-201ENST00000330494 ANKRD24Q8TF21 1146 aa12□□□□□ -0.49
CHD3-201ENST00000330494 DNAAF4Q8WXU2 420 aa11.99□□□□□ -0.49
CHD3-201ENST00000330494 CCDC144CPQ8IYA2 1237 aa11.99□□□□□ -0.49
CHD3-201ENST00000330494 AMOTQ4VCS5 1084 aa11.99□□□□□ -0.49
CHD3-201ENST00000330494 ZNF76P36508 570 aa11.99□□□□□ -0.49
CHD3-201ENST00000330494 CAVIN4Q5BKX8 364 aa11.99□□□□□ -0.49
CHD3-201ENST00000330494 SNRKQ9NRH2 765 aa11.99□□□□□ -0.49
CHD3-201ENST00000330494 SCAF11Q99590 1463 aaKnown RBP11.99□□□□□ -0.49
CHD3-201ENST00000330494 DHX8Q14562 1220 aaKnown RBP11.99□□□□□ -0.49
CHD3-201ENST00000330494 RAB11FIP4Q86YS3 637 aa11.99□□□□□ -0.49
CHD3-201ENST00000330494 CABLES1Q8TDN4 633 aa11.99□□□□□ -0.49
CHD3-201ENST00000330494 EXOC5O00471 708 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 MBIPQ9NS73 344 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 KDM5BQ9UGL1 1544 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 DZIP1Q86YF9 867 aaKnown RBP11.98□□□□□ -0.49
CHD3-201ENST00000330494 CTNNA3Q9UI47 895 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 MAP7D2Q96T17 732 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 MKNK2Q9HBH9 465 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 PPP6R1Q9UPN7 881 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 SYCP2Q9BX26 1530 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 RANBP6O60518 1105 aaKnown RBP11.98□□□□□ -0.49
CHD3-201ENST00000330494 CCDC192P0DO97 292 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 MATR3P43243 847 aaKnown RBP eCLIP11.98□□□□□ -0.493e-8■■■□□ 14.8
CHD3-201ENST00000330494 CCT2P78371 535 aaKnown RBP11.98□□□□□ -0.49
CHD3-201ENST00000330494 FLIIQ13045 1269 aa11.98□□□□□ -0.49
CHD3-201ENST00000330494 JMYQ8N9B5 988 aa11.97□□□□□ -0.49
CHD3-201ENST00000330494 SLC39A6Q13433 755 aa11.97□□□□□ -0.49
CHD3-201ENST00000330494 WWC3Q9ULE0 1092 aa11.97□□□□□ -0.49
CHD3-201ENST00000330494 SYCP1Q15431 976 aa11.97□□□□□ -0.49
CHD3-201ENST00000330494 SMARCE1Q969G3 411 aa11.97□□□□□ -0.49
CHD3-201ENST00000330494 C14orf93Q9H972 538 aaKnown RBP11.97□□□□□ -0.49
CHD3-201ENST00000330494 AKAP2Q9Y2D5 859 aa11.97□□□□□ -0.49
CHD3-201ENST00000330494 GLRX3O76003 335 aaKnown RBP11.97□□□□□ -0.49
CHD3-201ENST00000330494 RPGRQ92834 1020 aaKnown RBP11.97□□□□□ -0.49
CHD3-201ENST00000330494 GPATCH8Q9UKJ3 1502 aaKnown RBP11.97□□□□□ -0.49
CHD3-201ENST00000330494 ALDH1L2Q3SY69 923 aa11.97□□□□□ -0.49
CHD3-201ENST00000330494 NAPBQ9H115 298 aa11.97□□□□□ -0.49
CHD3-201ENST00000330494 NOL7Q9UMY1 257 aaKnown RBP11.97□□□□□ -0.49
CHD3-201ENST00000330494 CCDC66A2RUB6 948 aa11.96□□□□□ -0.49
CHD3-201ENST00000330494 PI4KAP2A4QPH2 592 aa11.96□□□□□ -0.49
CHD3-201ENST00000330494 RAB11FIP3O75154 756 aa11.96□□□□□ -0.49
CHD3-201ENST00000330494 CRACR2BQ8N4Y2 399 aaPredicted RBP11.96□□□□□ -0.49
CHD3-201ENST00000330494 PI4KAP1Q8N8J0 262 aa11.96□□□□□ -0.49
CHD3-201ENST00000330494 WWC2Q6AWC2 1192 aa11.96□□□□□ -0.49
CHD3-201ENST00000330494 SEPT11Q9NVA2 429 aaKnown RBP11.96□□□□□ -0.49
CHD3-201ENST00000330494 ITSN2Q9NZM3 1697 aa11.96□□□□□ -0.49
CHD3-201ENST00000330494 RPRD2Q5VT52 1461 aaKnown RBP11.96□□□□□ -0.5
CHD3-201ENST00000330494 GOLIM4O00461 696 aa11.96□□□□□ -0.5
CHD3-201ENST00000330494 UBE3BQ7Z3V4 1068 aa11.96□□□□□ -0.5
CHD3-201ENST00000330494 MTERF4Q7Z6M4 381 aaKnown RBP11.96□□□□□ -0.5
CHD3-201ENST00000330494 HYPKQ9NX55 129 aa11.96□□□□□ -0.5
CHD3-201ENST00000330494 HAND2P61296 217 aa11.95□□□□□ -0.5
CHD3-201ENST00000330494 TRMT1LQ7Z2T5 733 aaKnown RBP11.95□□□□□ -0.5
CHD3-201ENST00000330494 DEF6Q9H4E7 631 aa11.95□□□□□ -0.5
CHD3-201ENST00000330494 DBF4Q9UBU7 674 aaPredicted RBP11.95□□□□□ -0.5
CHD3-201ENST00000330494 SYCE3A1L190 88 aa11.95□□□□□ -0.5
CHD3-201ENST00000330494 CDKL5O76039 1030 aa11.95□□□□□ -0.5
CHD3-201ENST00000330494 ANKRD18BA2A2Z9 1011 aa11.95□□□□□ -0.5
CHD3-201ENST00000330494 IGHDP01880 384 aa11.95□□□□□ -0.5
CHD3-201ENST00000330494 AK7Q96M32 723 aa11.95□□□□□ -0.5
CHD3-201ENST00000330494 LRRC59Q96AG4 307 aaKnown RBP11.95□□□□□ -0.5
CHD3-201ENST00000330494 PDCL3Q9H2J4 239 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms