RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 UVSSAQ2YD98 709 aa13.18□□□□□ -0.3
ZNF558-201ENST00000301475 GTPBP4Q9BZE4 634 aaKnown RBP13.18□□□□□ -0.3
ZNF558-201ENST00000301475 SPDYE4A6NLX3 237 aa13.18□□□□□ -0.3
ZNF558-201ENST00000301475 DCTN1Q14203 1278 aa13.18□□□□□ -0.3
ZNF558-201ENST00000301475 INTS4Q96HW7 963 aaKnown RBP13.18□□□□□ -0.3
ZNF558-201ENST00000301475 STAG3Q9UJ98 1225 aa13.18□□□□□ -0.3
ZNF558-201ENST00000301475 PDE1AP54750 535 aa13.18□□□□□ -0.3
ZNF558-201ENST00000301475 MCM2P49736 904 aa13.17□□□□□ -0.3
ZNF558-201ENST00000301475 UPF3BQ9BZI7 483 aaKnown RBP13.17□□□□□ -0.3
ZNF558-201ENST00000301475 KCNF1Q9H3M0 494 aa13.17□□□□□ -0.3
ZNF558-201ENST00000301475 EMILIN1Q9Y6C2 1016 aa13.17□□□□□ -0.3
ZNF558-201ENST00000301475 RICTORQ6R327 1708 aa13.17□□□□□ -0.3
ZNF558-201ENST00000301475 YTHDC2Q9H6S0 1430 aaKnown RBP13.17□□□□□ -0.3
ZNF558-201ENST00000301475 VGFO15240 615 aaPredicted RBP13.16□□□□□ -0.3
ZNF558-201ENST00000301475 TPRNQ4KMQ1 711 aa13.16□□□□□ -0.3
ZNF558-201ENST00000301475 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.16□□□□□ -0.3
ZNF558-201ENST00000301475 ESYT1Q9BSJ8 1104 aa13.16□□□□□ -0.3
ZNF558-201ENST00000301475 PYCARDQ9ULZ3 195 aa13.16□□□□□ -0.3
ZNF558-201ENST00000301475 RPAP1Q9BWH6 1393 aaPredicted RBP13.16□□□□□ -0.3
ZNF558-201ENST00000301475 AP5Z1O43299 807 aa13.16□□□□□ -0.3
ZNF558-201ENST00000301475 KIF20AO95235 890 aa13.16□□□□□ -0.3
ZNF558-201ENST00000301475 CCDC183Q5T5S1 534 aa13.16□□□□□ -0.3
ZNF558-201ENST00000301475 PDCL2Q8N4E4 241 aa13.16□□□□□ -0.3
ZNF558-201ENST00000301475 OSBPL3Q9H4L5 887 aa13.16□□□□□ -0.3
ZNF558-201ENST00000301475 RIOK3O14730 519 aaKnown RBP13.15□□□□□ -0.3
ZNF558-201ENST00000301475 U2AF2P26368 475 aaKnown RBP eCLIP13.15□□□□□ -0.3
ZNF558-201ENST00000301475 HDGFL2Q7Z4V5 671 aaPredicted RBP13.15□□□□□ -0.3
ZNF558-201ENST00000301475 PRAM1Q96QH2 718 aa13.15□□□□□ -0.3
ZNF558-201ENST00000301475 SRCIN1Q9C0H9 1055 aa13.15□□□□□ -0.3
ZNF558-201ENST00000301475 ESF1Q9H501 851 aaKnown RBP13.15□□□□□ -0.3
ZNF558-201ENST00000301475 KIAA1524Q8TCG1 905 aa13.15□□□□□ -0.3
ZNF558-201ENST00000301475 CABP1Q9NZU7 370 aa13.15□□□□□ -0.3
ZNF558-201ENST00000301475 IL13P35225 146 aa13.15□□□□□ -0.3
ZNF558-201ENST00000301475 TMEM87AQ8NBN3 555 aa13.15□□□□□ -0.3
ZNF558-201ENST00000301475 ANKRD7Q92527 254 aa13.15□□□□□ -0.3
ZNF558-201ENST00000301475 CNPY2Q9Y2B0 182 aa13.15□□□□□ -0.3
ZNF558-201ENST00000301475 IGSF3O75054 1194 aa13.14□□□□□ -0.31
ZNF558-201ENST00000301475 KDM4AO75164 1064 aa13.14□□□□□ -0.31
ZNF558-201ENST00000301475 LETM1O95202 739 aaPredicted RBP13.14□□□□□ -0.31
ZNF558-201ENST00000301475 ANO2Q9NQ90 1003 aa13.14□□□□□ -0.31
ZNF558-201ENST00000301475 WDR33Q9C0J8 1336 aaKnown RBP13.14□□□□□ -0.31
ZNF558-201ENST00000301475 SALL3Q9BXA9 1300 aa13.13□□□□□ -0.31
ZNF558-201ENST00000301475 CPSF1Q10570 1443 aaKnown RBP13.13□□□□□ -0.31
ZNF558-201ENST00000301475 MX1P20591 662 aa13.13□□□□□ -0.31
ZNF558-201ENST00000301475 FUCA2Q9BTY2 467 aa13.13□□□□□ -0.31
ZNF558-201ENST00000301475 PLCB2Q00722 1185 aa13.13□□□□□ -0.31
ZNF558-201ENST00000301475 ANAPC15P60006 121 aa13.12□□□□□ -0.31
ZNF558-201ENST00000301475 IL25Q9H293 177 aa13.12□□□□□ -0.31
ZNF558-201ENST00000301475 EXOC6BQ9Y2D4 811 aa13.12□□□□□ -0.31
ZNF558-201ENST00000301475 KIAA0232Q92628 1395 aa13.12□□□□□ -0.31
ZNF558-201ENST00000301475 CTIFO43310 598 aaKnown RBP13.11□□□□□ -0.31
ZNF558-201ENST00000301475 MCCP23508 829 aa13.11□□□□□ -0.31
ZNF558-201ENST00000301475 CHMLP26374 656 aa13.11□□□□□ -0.31
ZNF558-201ENST00000301475 LMOD3Q0VAK6 560 aa13.11□□□□□ -0.31
ZNF558-201ENST00000301475 CDK19Q9BWU1 502 aa13.11□□□□□ -0.31
ZNF558-201ENST00000301475 MYO5BQ9ULV0 1848 aa13.11□□□□□ -0.31
ZNF558-201ENST00000301475 GIMAP6Q6P9H5 292 aa13.11□□□□□ -0.31
ZNF558-201ENST00000301475 CDK12Q9NYV4 1490 aaPredicted RBP13.11□□□□□ -0.31
ZNF558-201ENST00000301475 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.1□□□□□ -0.31
ZNF558-201ENST00000301475 DIAPH3Q9NSV4 1193 aa13.1□□□□□ -0.31
ZNF558-201ENST00000301475 FGD1P98174 961 aa13.1□□□□□ -0.31
ZNF558-201ENST00000301475 UNC5CLQ8IV45 518 aa13.1□□□□□ -0.31
ZNF558-201ENST00000301475 SPC24Q8NBT2 197 aa13.1□□□□□ -0.31
ZNF558-201ENST00000301475 IL17RAQ96F46 866 aa13.1□□□□□ -0.31
ZNF558-201ENST00000301475 UBE2HP62256 183 aa13.1□□□□□ -0.31
ZNF558-201ENST00000301475 FIBPO43427 364 aa13.09□□□□□ -0.31
ZNF558-201ENST00000301475 SSH2Q76I76 1423 aa13.09□□□□□ -0.31
ZNF558-201ENST00000301475 HMMRO75330 724 aa13.09□□□□□ -0.31
ZNF558-201ENST00000301475 NCBP1Q09161 790 aaKnown RBP13.09□□□□□ -0.31
ZNF558-201ENST00000301475 RILPL2Q969X0 211 aa13.09□□□□□ -0.31
ZNF558-201ENST00000301475 ZRANB1Q9UGI0 708 aa13.09□□□□□ -0.31
ZNF558-201ENST00000301475 ZSCAN22P10073 491 aaPredicted RBP13.08□□□□□ -0.32
ZNF558-201ENST00000301475 CHAF1AQ13111 956 aaPredicted RBP13.08□□□□□ -0.32
ZNF558-201ENST00000301475 PTPRCP08575 1304 aa13.08□□□□□ -0.32
ZNF558-201ENST00000301475 TRIM6-TRIM34B2RNG4 842 aa13.07□□□□□ -0.32
ZNF558-201ENST00000301475 F6X3S4 739 aa13.07□□□□□ -0.32
ZNF558-201ENST00000301475 SLC52A1Q9NWF4 448 aa13.07□□□□□ -0.32
ZNF558-201ENST00000301475 DTNBO60941 627 aa13.07□□□□□ -0.32
ZNF558-201ENST00000301475 LARP6Q9BRS8 491 aaKnown RBP13.07□□□□□ -0.32
ZNF558-201ENST00000301475 SYT1P21579 422 aa13.07□□□□□ -0.32
ZNF558-201ENST00000301475 RRS1Q15050 365 aaKnown RBP13.07□□□□□ -0.32
ZNF558-201ENST00000301475 NME9Q86XW9 330 aa13.07□□□□□ -0.32
ZNF558-201ENST00000301475 KIF13AQ9H1H9 1805 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 CEBPAP49715 358 aaPredicted RBP13.06□□□□□ -0.32
ZNF558-201ENST00000301475 SLC4A10Q6U841 1118 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 G2E3Q7L622 706 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 ATP7BP35670 1465 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 PREX1Q8TCU6 1659 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 CHL1O00533 1208 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 STX6O43752 255 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 F13A1P00488 732 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 PTGS1P23219 599 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 HSPA4P34932 840 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 AEBP1Q8IUX7 1158 aa13.06□□□□□ -0.32
ZNF558-201ENST00000301475 SLC4A2P04920 1241 aa13.05□□□□□ -0.32
ZNF558-201ENST00000301475 MCM10Q7L590 875 aa13.05□□□□□ -0.32
ZNF558-201ENST00000301475 LRRCC1Q9C099 1032 aa13.05□□□□□ -0.32
ZNF558-201ENST00000301475 GTF2E1P29083 439 aaPredicted RBP13.05□□□□□ -0.32
ZNF558-201ENST00000301475 FEZ1Q99689 392 aa13.05□□□□□ -0.32
ZNF558-201ENST00000301475 PNMA6EA0A0J9YXQ4 647 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms