RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 ARID5BQ14865 1188 aa12.11□□□□□ -0.47
CLDN1-201ENST00000295522 TEX35Q5T0J7 233 aa12.11□□□□□ -0.47
CLDN1-201ENST00000295522 ZSCAN25Q6NSZ9 544 aa12.11□□□□□ -0.47
CLDN1-201ENST00000295522 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.11□□□□□ -0.47
CLDN1-201ENST00000295522 CFAP74Q9C0B2 1584 aa12.11□□□□□ -0.47
CLDN1-201ENST00000295522 TFIP11Q9UBB9 837 aaKnown RBP12.11□□□□□ -0.47
CLDN1-201ENST00000295522 ERVK-7P63135 1459 aa12.11□□□□□ -0.47
CLDN1-201ENST00000295522 FAM83GA6ND36 823 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 HMMRO75330 724 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 NPM1P06748 294 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLDN1-201ENST00000295522 TYRO3Q06418 890 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 ESYT1Q9BSJ8 1104 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 NOS1P29475 1434 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 USP27XA6NNY8 438 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 ERCC6LQ2NKX8 1250 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 CD109Q6YHK3 1445 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 HOMER1Q86YM7 354 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 DNAJC25Q9H1X3 360 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 MBIPQ9NS73 344 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 BECN2A8MW95 431 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 PDE1AP54750 535 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 GNL2Q13823 731 aaKnown RBP12.1□□□□□ -0.47
CLDN1-201ENST00000295522 SKIDA1Q1XH10 827 aa12.1□□□□□ -0.47
CLDN1-201ENST00000295522 CACTINQ8WUQ7 758 aaKnown RBP12.1□□□□□ -0.47
CLDN1-201ENST00000295522 F13A1P00488 732 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 GNAI1P63096 354 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 CEBPZQ03701 1054 aaKnown RBP12.09□□□□□ -0.47
CLDN1-201ENST00000295522 RAD51AP2Q09MP3 1159 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 SHANK2Q9UPX8 1470 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 SHROOM2Q13796 1616 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 SKILP12757 684 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 KRBA2Q6ZNG9 492 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 PHACTR3Q96KR7 559 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 PLEKHF1Q96S99 279 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 IQSEC2Q5JU85 1478 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 ZNF165P49910 485 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 INTS4Q96HW7 963 aaKnown RBP12.09□□□□□ -0.47
CLDN1-201ENST00000295522 IL1RAPL2Q9NP60 686 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 DACT1Q9NYF0 836 aa12.09□□□□□ -0.47
CLDN1-201ENST00000295522 CEP85Q6P2H3 762 aa12.08□□□□□ -0.48
CLDN1-201ENST00000295522 CCAR2Q8N163 923 aaKnown RBP12.08□□□□□ -0.48
CLDN1-201ENST00000295522 CBX8Q9HC52 389 aa12.08□□□□□ -0.48
CLDN1-201ENST00000295522 ZNF518AQ6AHZ1 1483 aa12.08□□□□□ -0.48
CLDN1-201ENST00000295522 GJB2P29033 226 aa12.08□□□□□ -0.48
CLDN1-201ENST00000295522 FOSBP53539 338 aa12.08□□□□□ -0.48
CLDN1-201ENST00000295522 BMS1Q14692 1282 aaKnown RBP12.08□□□□□ -0.48
CLDN1-201ENST00000295522 FAM177A1Q8N128 213 aaPredicted RBP12.08□□□□□ -0.48
CLDN1-201ENST00000295522 ANKRD44Q8N8A2 993 aa12.08□□□□□ -0.48
CLDN1-201ENST00000295522 TAOK2Q9UL54 1235 aa12.08□□□□□ -0.48
CLDN1-201ENST00000295522 KDM5AP29375 1690 aaKnown RBP12.08□□□□□ -0.48
CLDN1-201ENST00000295522 F6X3S4 739 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 CUL4AQ13619 759 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 GPATCH11Q8N954 259 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 NECTIN2Q92692 538 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 CROCC2H7BZ55 1655 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 CDC42BPAQ5VT25 1732 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 LIG1P18858 919 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 CCDC191Q8NCU4 936 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 FEZ2Q9UHY8 353 aaPredicted RBP12.07□□□□□ -0.48
CLDN1-201ENST00000295522 USP16Q9Y5T5 823 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 TRAPPC8Q9Y2L5 1435 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 ABCA8O94911 1581 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 PTPRTO14522 1441 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 SLU7O95391 586 aaKnown RBP12.07□□□□□ -0.48
CLDN1-201ENST00000295522 APPP05067 770 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 RBM6P78332 1123 aaKnown RBP12.07□□□□□ -0.48
CLDN1-201ENST00000295522 NECAB1Q8N987 351 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 CCDC34Q96HJ3 373 aa12.07□□□□□ -0.48
CLDN1-201ENST00000295522 LRRFIP2Q9Y608 721 aaKnown RBP12.07□□□□□ -0.48
CLDN1-201ENST00000295522 IL16Q14005 1332 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 ARHGAP29Q52LW3 1261 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 RPAP2Q8IXW5 612 aaPredicted RBP12.06□□□□□ -0.48
CLDN1-201ENST00000295522 TSPYL1Q9H0U9 437 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 RASSF4Q9H2L5 321 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 EVC2Q86UK5 1308 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 MINK1Q8N4C8 1332 aaPredicted RBP12.06□□□□□ -0.48
CLDN1-201ENST00000295522 A0A087WWV3 80 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 TRIM66O15016 1216 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 CASTP20810 708 aaKnown RBP12.06□□□□□ -0.48
CLDN1-201ENST00000295522 ZNF75DP51815 510 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 GTF2A1P52655 376 aaPredicted RBP12.06□□□□□ -0.48
CLDN1-201ENST00000295522 AK2P54819 239 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 CCDC144BQ3MJ40 725 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 CCDC144CPQ8IYA2 1237 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 MNS1Q8NEH6 495 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 SPG7Q9UQ90 795 aa12.06□□□□□ -0.48
CLDN1-201ENST00000295522 MYO5CQ9NQX4 1742 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 GYS2P54840 703 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 LARP1BQ659C4 914 aaKnown RBP12.05□□□□□ -0.48
CLDN1-201ENST00000295522 TMCO3Q6UWJ1 677 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 SYT10Q6XYQ8 523 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 NUTM1Q86Y26 1132 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 FMNL2Q96PY5 1086 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 ZCCHC17Q9NP64 241 aaKnown RBP12.05□□□□□ -0.48
CLDN1-201ENST00000295522 STAG3Q9UJ98 1225 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 KRT85P78386 507 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 GPS2Q13227 327 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 MLECQ14165 292 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 ARHGAP45Q92619 1136 aa12.05□□□□□ -0.48
CLDN1-201ENST00000295522 MRVI1Q9Y6F6 885 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms