RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 IFT57Q9NWB7 429 aa15.95■□□□□ 0.14
NUP54-201ENST00000264883 VGLL3A8MV65 326 aa15.94■□□□□ 0.14
NUP54-201ENST00000264883 U2AF2P26368 475 aaKnown RBP eCLIP15.94■□□□□ 0.145e-7■□□□□ 8.9
NUP54-201ENST00000264883 FKBP5Q13451 457 aaPredicted RBP15.94■□□□□ 0.14
NUP54-201ENST00000264883 NFE2L2Q16236 605 aa15.94■□□□□ 0.14
NUP54-201ENST00000264883 MPNDQ8N594 471 aa15.94■□□□□ 0.14
NUP54-201ENST00000264883 ATP7BP35670 1465 aa15.94■□□□□ 0.14
NUP54-201ENST00000264883 LMOD3Q0VAK6 560 aa15.93■□□□□ 0.14
NUP54-201ENST00000264883 API5Q9BZZ5 524 aaKnown RBP15.93■□□□□ 0.14
NUP54-201ENST00000264883 ZDHHC9Q9Y397 364 aa15.93■□□□□ 0.14
NUP54-201ENST00000264883 VAMP4O75379 141 aa15.93■□□□□ 0.14
NUP54-201ENST00000264883 C17orf53Q8N3J3 647 aaPredicted RBP15.93■□□□□ 0.14
NUP54-201ENST00000264883 SPTLC3Q9NUV7 552 aa15.93■□□□□ 0.14
NUP54-201ENST00000264883 CDK11BP21127 795 aaKnown RBP15.92■□□□□ 0.14
NUP54-201ENST00000264883 ANKLE2Q86XL3 938 aa15.92■□□□□ 0.14
NUP54-201ENST00000264883 ZGPATQ8N5A5 531 aaKnown RBP15.92■□□□□ 0.14
NUP54-201ENST00000264883 AMOTL2Q9Y2J4 779 aa15.92■□□□□ 0.14
NUP54-201ENST00000264883 ANKRD7Q92527 254 aa15.92■□□□□ 0.14
NUP54-201ENST00000264883 CHAMP1Q96JM3 812 aa15.92■□□□□ 0.14
NUP54-201ENST00000264883 FEZ1Q99689 392 aa15.92■□□□□ 0.14
NUP54-201ENST00000264883 TTC12Q9H892 705 aaPredicted RBP15.91■□□□□ 0.14
NUP54-201ENST00000264883 ZBTB22O15209 634 aa15.91■□□□□ 0.14
NUP54-201ENST00000264883 CABP1Q9NZU7 370 aa15.91■□□□□ 0.14
NUP54-201ENST00000264883 PRKAR2BP31323 418 aa15.9■□□□□ 0.14
NUP54-201ENST00000264883 HAP1P54257 671 aaPredicted RBP15.9■□□□□ 0.14
NUP54-201ENST00000264883 DIAPH3Q9NSV4 1193 aa15.9■□□□□ 0.14
NUP54-201ENST00000264883 ZNF853P0CG23 659 aa15.9■□□□□ 0.14
NUP54-201ENST00000264883 CHAF1AQ13111 956 aaPredicted RBP15.9■□□□□ 0.14
NUP54-201ENST00000264883 SYAP1Q96A49 352 aaPredicted RBP15.9■□□□□ 0.14
NUP54-201ENST00000264883 OGFRQ9NZT2 677 aa15.9■□□□□ 0.14
NUP54-201ENST00000264883 UVSSAQ2YD98 709 aa15.89■□□□□ 0.13
NUP54-201ENST00000264883 CPSF1Q10570 1443 aaKnown RBP15.89■□□□□ 0.13
NUP54-201ENST00000264883 CDK12Q9NYV4 1490 aaPredicted RBP15.89■□□□□ 0.13
NUP54-201ENST00000264883 CHD2O14647 1828 aaKnown RBP15.88■□□□□ 0.13
NUP54-201ENST00000264883 RIOK3O14730 519 aaKnown RBP15.88■□□□□ 0.13
NUP54-201ENST00000264883 ST18O60284 1047 aa15.88■□□□□ 0.13
NUP54-201ENST00000264883 TAF7LQ5H9L4 462 aa15.88■□□□□ 0.13
NUP54-201ENST00000264883 TOPAZ1Q8N9V7 1692 aa15.88■□□□□ 0.13
NUP54-201ENST00000264883 LMTK3Q96Q04 1460 aa15.88■□□□□ 0.13
NUP54-201ENST00000264883 PRR36Q9H6K5 1346 aa15.87■□□□□ 0.13
NUP54-201ENST00000264883 GABPB1Q06547 395 aaPredicted RBP15.87■□□□□ 0.13
NUP54-201ENST00000264883 FOXD4L5Q5VV16 416 aaPredicted RBP15.87■□□□□ 0.13
NUP54-201ENST00000264883 CASC1Q6TDU7 716 aa15.87■□□□□ 0.13
NUP54-201ENST00000264883 FAM184AQ8NB25 1140 aa15.87■□□□□ 0.13
NUP54-201ENST00000264883 FOXD4L4Q8WXT5 416 aaPredicted RBP15.87■□□□□ 0.13
NUP54-201ENST00000264883 NUDT16Q96DE0 195 aaKnown RBP15.87■□□□□ 0.13
NUP54-201ENST00000264883 PHF14O94880 888 aa15.87■□□□□ 0.13
NUP54-201ENST00000264883 INTS3Q68E01 1043 aaKnown RBP15.87■□□□□ 0.13
NUP54-201ENST00000264883 USP25Q9UHP3 1055 aa15.87■□□□□ 0.13
NUP54-201ENST00000264883 SIRT2Q8IXJ6 389 aa15.86■□□□□ 0.13
NUP54-201ENST00000264883 USP26Q9BXU7 913 aa15.86■□□□□ 0.13
NUP54-201ENST00000264883 DCTPP1Q9H773 170 aa15.86■□□□□ 0.13
NUP54-201ENST00000264883 CCDC61Q9Y6R9 512 aa15.86■□□□□ 0.13
NUP54-201ENST00000264883 ADCY5O95622 1261 aa15.86■□□□□ 0.13
NUP54-201ENST00000264883 AATKQ6ZMQ8 1374 aa15.85■□□□□ 0.13
NUP54-201ENST00000264883 CTIFO43310 598 aaKnown RBP15.85■□□□□ 0.13
NUP54-201ENST00000264883 TWISTNBQ3B726 338 aaPredicted RBP15.85■□□□□ 0.13
NUP54-201ENST00000264883 TTC22Q5TAA0 569 aa15.85■□□□□ 0.13
NUP54-201ENST00000264883 POLKQ9UBT6 870 aa15.85■□□□□ 0.13
NUP54-201ENST00000264883 MON2Q7Z3U7 1717 aa15.85■□□□□ 0.13
NUP54-201ENST00000264883 NPHP4O75161 1426 aaPredicted RBP15.85■□□□□ 0.13
NUP54-201ENST00000264883 AKAP12Q02952 1782 aa15.85■□□□□ 0.13
NUP54-201ENST00000264883 KCNA6P17658 529 aa15.85■□□□□ 0.13
NUP54-201ENST00000264883 IRX5P78411 483 aaPredicted RBP15.85■□□□□ 0.13
NUP54-201ENST00000264883 PLEKHM2Q8IWE5 1019 aa15.85■□□□□ 0.13
NUP54-201ENST00000264883 PLCD3Q8N3E9 789 aa15.85■□□□□ 0.13
NUP54-201ENST00000264883 GSPT1P15170 499 aaKnown RBP15.84■□□□□ 0.13
NUP54-201ENST00000264883 KCNJ4P48050 445 aa15.84■□□□□ 0.13
NUP54-201ENST00000264883 RPAP2Q8IXW5 612 aaPredicted RBP15.84■□□□□ 0.13
NUP54-201ENST00000264883 MBIPQ9NS73 344 aa15.84■□□□□ 0.13
NUP54-201ENST00000264883 EDC4Q6P2E9 1401 aaKnown RBP15.83■□□□□ 0.12
NUP54-201ENST00000264883 NCKAP5LQ9HCH0 1330 aa15.83■□□□□ 0.12
NUP54-201ENST00000264883 C1orf115Q9H7X2 142 aa15.83■□□□□ 0.12
NUP54-201ENST00000264883 MAP2P11137 1827 aaKnown RBP15.82■□□□□ 0.12
NUP54-201ENST00000264883 CCDC66A2RUB6 948 aa15.82■□□□□ 0.12
NUP54-201ENST00000264883 KIAA1524Q8TCG1 905 aa15.82■□□□□ 0.12
NUP54-201ENST00000264883 ITSN1Q15811 1721 aa15.82■□□□□ 0.12
NUP54-201ENST00000264883 SLFN14P0C7P3 912 aa15.82■□□□□ 0.12
NUP54-201ENST00000264883 ANKRD44Q8N8A2 993 aa15.82■□□□□ 0.12
NUP54-201ENST00000264883 REC8O95072 547 aa15.81■□□□□ 0.12
NUP54-201ENST00000264883 IL13P35225 146 aa15.81■□□□□ 0.12
NUP54-201ENST00000264883 TSPYL6Q8N831 410 aa15.81■□□□□ 0.12
NUP54-201ENST00000264883 CTNNA3Q9UI47 895 aa15.8■□□□□ 0.12
NUP54-201ENST00000264883 PLEKHG3A1L390 1219 aa15.8■□□□□ 0.12
NUP54-201ENST00000264883 NCBP1Q09161 790 aaKnown RBP15.8■□□□□ 0.12
NUP54-201ENST00000264883 PHACTR3Q96KR7 559 aa15.8■□□□□ 0.12
NUP54-201ENST00000264883 DLG5Q8TDM6 1919 aa15.79■□□□□ 0.12
NUP54-201ENST00000264883 BRD1O95696 1058 aa15.79■□□□□ 0.12
NUP54-201ENST00000264883 NWD1Q149M9 1564 aa15.79■□□□□ 0.12
NUP54-201ENST00000264883 NRKQ7Z2Y5 1582 aa15.79■□□□□ 0.12
NUP54-201ENST00000264883 PYCARDQ9ULZ3 195 aa15.79■□□□□ 0.12
NUP54-201ENST00000264883 ATP10DQ9P241 1426 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 SYCP1Q15431 976 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 DNAJC2Q99543 621 aaKnown RBP15.78■□□□□ 0.12
NUP54-201ENST00000264883 DDX41Q9UJV9 622 aaKnown RBP15.78■□□□□ 0.12
NUP54-201ENST00000264883 PTPRCP08575 1304 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 NALCNQ8IZF0 1738 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 FMN2Q9NZ56 1722 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 KDM4AO75164 1064 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 GADD45BO75293 160 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms