RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 TTC22Q5TAA0 569 aa19.88■□□□□ 0.77
PHRF1-201ENST00000264555 OLFM4Q6UX06 510 aa19.87■□□□□ 0.77
PHRF1-201ENST00000264555 RAD21O60216 631 aa19.87■□□□□ 0.77
PHRF1-201ENST00000264555 STK38Q15208 465 aa19.87■□□□□ 0.77
PHRF1-201ENST00000264555 FMNL2Q96PY5 1086 aa19.86■□□□□ 0.77
PHRF1-201ENST00000264555 UPF3BQ9BZI7 483 aaKnown RBP19.86■□□□□ 0.77
PHRF1-201ENST00000264555 PTCD1O75127 700 aaKnown RBP19.86■□□□□ 0.77
PHRF1-201ENST00000264555 SLC3A2P08195 630 aaKnown RBP19.86■□□□□ 0.77
PHRF1-201ENST00000264555 ZMYM4Q5VZL5 1548 aa19.86■□□□□ 0.77
PHRF1-201ENST00000264555 ZMYM3Q14202 1370 aa19.86■□□□□ 0.77
PHRF1-201ENST00000264555 VAMP4O75379 141 aa19.86■□□□□ 0.77
PHRF1-201ENST00000264555 CCDC192P0DO97 292 aa19.86■□□□□ 0.77
PHRF1-201ENST00000264555 RLBP1P12271 317 aa19.86■□□□□ 0.77
PHRF1-201ENST00000264555 TRIM5Q9C035 493 aa19.86■□□□□ 0.77
PHRF1-201ENST00000264555 KDM6BO15054 1643 aa19.85■□□□□ 0.77
PHRF1-201ENST00000264555 RRP12Q5JTH9 1297 aaKnown RBP19.85■□□□□ 0.77
PHRF1-201ENST00000264555 ANKRD24Q8TF21 1146 aa19.85■□□□□ 0.77
PHRF1-201ENST00000264555 SPINK5Q9NQ38 1064 aaPredicted RBP19.85■□□□□ 0.77
PHRF1-201ENST00000264555 TMOD3Q9NYL9 352 aa19.85■□□□□ 0.77
PHRF1-201ENST00000264555 C8orf34Q49A92 452 aa19.85■□□□□ 0.77
PHRF1-201ENST00000264555 HOMER1Q86YM7 354 aa19.85■□□□□ 0.77
PHRF1-201ENST00000264555 IFNL2Q8IZJ0 200 aa19.85■□□□□ 0.77
PHRF1-201ENST00000264555 ANKRD44Q8N8A2 993 aa19.85■□□□□ 0.77
PHRF1-201ENST00000264555 MAP3K2Q9Y2U5 619 aa19.85■□□□□ 0.77
PHRF1-201ENST00000264555 PI4KAP2A4QPH2 592 aa19.84■□□□□ 0.77
PHRF1-201ENST00000264555 PRPF40BQ6NWY9 871 aaKnown RBP19.84■□□□□ 0.77
PHRF1-201ENST00000264555 PI4KAP1Q8N8J0 262 aa19.84■□□□□ 0.77
PHRF1-201ENST00000264555 BOLA2Q9H3K6 86 aa19.84■□□□□ 0.77
PHRF1-201ENST00000264555 AKAP2Q9Y2D5 859 aa19.84■□□□□ 0.77
PHRF1-201ENST00000264555 FLT4P35916 1363 aa19.84■□□□□ 0.77
PHRF1-201ENST00000264555 CEBPZQ03701 1054 aaKnown RBP19.84■□□□□ 0.77
PHRF1-201ENST00000264555 JMYQ8N9B5 988 aa19.84■□□□□ 0.77
PHRF1-201ENST00000264555 MEIS3Q99687 375 aa19.84■□□□□ 0.77
PHRF1-201ENST00000264555 PHACTR3Q96KR7 559 aa19.83■□□□□ 0.77
PHRF1-201ENST00000264555 PPP1R42Q7Z4L9 355 aa19.83■□□□□ 0.77
PHRF1-201ENST00000264555 BLMP54132 1417 aaPredicted RBP19.83■□□□□ 0.77
PHRF1-201ENST00000264555 IPO7O95373 1038 aaKnown RBP19.83■□□□□ 0.76
PHRF1-201ENST00000264555 TNNQ9UQP3 1299 aa19.83■□□□□ 0.76
PHRF1-201ENST00000264555 NOC3LQ8WTT2 800 aaKnown RBP19.83■□□□□ 0.76
PHRF1-201ENST00000264555 ECHDC1Q9NTX5 307 aa19.83■□□□□ 0.76
PHRF1-201ENST00000264555 RNF123Q5XPI4 1314 aa19.82■□□□□ 0.76
PHRF1-201ENST00000264555 GOLGA6L1Q8N7Z2 621 aa19.82■□□□□ 0.76
PHRF1-201ENST00000264555 TNMDQ9H2S6 317 aa19.82■□□□□ 0.76
PHRF1-201ENST00000264555 KDM4AO75164 1064 aa19.82■□□□□ 0.76
PHRF1-201ENST00000264555 CFAP45Q9UL16 551 aa19.82■□□□□ 0.76
PHRF1-201ENST00000264555 ATP10AO60312 1499 aa19.82■□□□□ 0.76
PHRF1-201ENST00000264555 SH2B1Q9NRF2 756 aaPredicted RBP19.81■□□□□ 0.76
PHRF1-201ENST00000264555 MTHFSDQ2M296 383 aaKnown RBP19.81■□□□□ 0.76
PHRF1-201ENST00000264555 SPATA32Q96LK8 384 aa19.81■□□□□ 0.76
PHRF1-201ENST00000264555 PCMTD1Q96MG8 357 aaPredicted RBP19.81■□□□□ 0.76
PHRF1-201ENST00000264555 CCDC8Q9H0W5 538 aaPredicted RBP19.81■□□□□ 0.76
PHRF1-201ENST00000264555 TRIM22Q8IYM9 498 aa19.81■□□□□ 0.76
PHRF1-201ENST00000264555 ZBTB40Q9NUA8 1239 aa19.81■□□□□ 0.76
PHRF1-201ENST00000264555 CCAR2Q8N163 923 aaKnown RBP19.81■□□□□ 0.76
PHRF1-201ENST00000264555 EVI5LQ96CN4 794 aa19.81■□□□□ 0.76
PHRF1-201ENST00000264555 TNPO1Q92973 898 aaKnown RBP19.8■□□□□ 0.76
PHRF1-201ENST00000264555 PTPRTO14522 1441 aa19.8■□□□□ 0.76
PHRF1-201ENST00000264555 MYO5CQ9NQX4 1742 aa19.8■□□□□ 0.76
PHRF1-201ENST00000264555 TSPYL6Q8N831 410 aa19.8■□□□□ 0.76
PHRF1-201ENST00000264555 NUTM2BA6NNL0 878 aaPredicted RBP19.8■□□□□ 0.76
PHRF1-201ENST00000264555 NUTM2EB1AL46 878 aaPredicted RBP19.8■□□□□ 0.76
PHRF1-201ENST00000264555 NUTM2AQ8IVF1 878 aaPredicted RBP19.8■□□□□ 0.76
PHRF1-201ENST00000264555 CDKL5O76039 1030 aa19.8■□□□□ 0.76
PHRF1-201ENST00000264555 ME1P48163 572 aa19.8■□□□□ 0.76
PHRF1-201ENST00000264555 A0A087WZG4 1122 aa19.8■□□□□ 0.76
PHRF1-201ENST00000264555 IMMTQ16891 758 aaKnown RBP19.8■□□□□ 0.76
PHRF1-201ENST00000264555 U3KPZ7 1027 aaPredicted RBP19.8■□□□□ 0.76
PHRF1-201ENST00000264555 METTL24Q5JXM2 366 aa19.79■□□□□ 0.76
PHRF1-201ENST00000264555 CADPS2Q86UW7 1296 aa19.79■□□□□ 0.76
PHRF1-201ENST00000264555 CCDC85AQ96PX6 553 aaPredicted RBP19.79■□□□□ 0.76
PHRF1-201ENST00000264555 CCDC69A6NI79 296 aa19.79■□□□□ 0.76
PHRF1-201ENST00000264555 NCBP3Q53F19 620 aaKnown RBP19.79■□□□□ 0.76
PHRF1-201ENST00000264555 SAMD9LQ8IVG5 1584 aa19.79■□□□□ 0.76
PHRF1-201ENST00000264555 CCDC83Q8IWF9 413 aa19.79■□□□□ 0.76
PHRF1-201ENST00000264555 IL27Q8NEV9 243 aa19.79■□□□□ 0.76
PHRF1-201ENST00000264555 TRPM2O94759 1503 aa19.79■□□□□ 0.76
PHRF1-201ENST00000264555 FAM13BQ9NYF5 915 aa19.79■□□□□ 0.76
PHRF1-201ENST00000264555 ATP2B1P20020 1258 aa19.78■□□□□ 0.76
PHRF1-201ENST00000264555 LIMCH1Q9UPQ0 1083 aa19.78■□□□□ 0.76
PHRF1-201ENST00000264555 R3HCC1Q9Y3T6 440 aaKnown RBP19.78■□□□□ 0.76
PHRF1-201ENST00000264555 SDSP20132 328 aa19.78■□□□□ 0.76
PHRF1-201ENST00000264555 AKAP4Q5JQC9 854 aa19.78■□□□□ 0.76
PHRF1-201ENST00000264555 SMC5Q8IY18 1101 aa19.78■□□□□ 0.76
PHRF1-201ENST00000264555 EDC4Q6P2E9 1401 aaKnown RBP19.78■□□□□ 0.76
PHRF1-201ENST00000264555 NEO1Q92859 1461 aa19.78■□□□□ 0.76
PHRF1-201ENST00000264555 IFIT1P09914 478 aaKnown RBP19.77■□□□□ 0.76
PHRF1-201ENST00000264555 SSFA2P28290 1259 aa19.77■□□□□ 0.76
PHRF1-201ENST00000264555 IGHMBP2P38935 993 aaKnown RBP19.77■□□□□ 0.76
PHRF1-201ENST00000264555 TBX22Q9Y458 520 aa19.77■□□□□ 0.76
PHRF1-201ENST00000264555 SNRPA1P09661 255 aaKnown RBP19.77■□□□□ 0.76
PHRF1-201ENST00000264555 CHPF2Q9P2E5 772 aa19.77■□□□□ 0.76
PHRF1-201ENST00000264555 RHPN1Q8TCX5 695 aa19.77■□□□□ 0.75
PHRF1-201ENST00000264555 IDH1O75874 414 aaKnown RBP19.76■□□□□ 0.75
PHRF1-201ENST00000264555 ATP8B2P98198 1209 aa19.76■□□□□ 0.75
PHRF1-201ENST00000264555 HSP90AB3PQ58FF7 597 aa19.76■□□□□ 0.75
PHRF1-201ENST00000264555 PDE1AP54750 535 aa19.76■□□□□ 0.75
PHRF1-201ENST00000264555 A0A0U1RQG5 324 aaPredicted RBP19.75■□□□□ 0.75
PHRF1-201ENST00000264555 IFIT5Q13325 482 aaKnown RBP19.75■□□□□ 0.75
PHRF1-201ENST00000264555 NUP62CLQ9H1M0 184 aa19.75■□□□□ 0.75
PHRF1-201ENST00000264555 HMGB1P09429 215 aaKnown RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 173.6 ms