RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NEMFO60524 1076 aa16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 MSL1Q68DK7 614 aa16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 GMNNO75496 209 aa16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 NUP88Q99567 741 aaPredicted RBP16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 YEATS4O95619 227 aa16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 NUTM2DQ5VT03 806 aaPredicted RBP16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 FEZ2Q9UHY8 353 aaPredicted RBP16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 TOP1P11387 765 aaKnown RBP16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 CARMIL1Q5VZK9 1371 aa16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 CCDC172P0C7W6 258 aa16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 TTC14Q96N46 770 aa16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 CCDC110Q8TBZ0 833 aa16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 TDO2P48775 406 aa16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 RPUSD2Q8IZ73 545 aaKnown RBP16.13■□□□□ 0.17
CCDC88A-201ENST00000263630 MAP3K9P80192 1104 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 FAM114A2Q9NRY5 505 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 ANO10Q9NW15 660 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 CPSF2Q9P2I0 782 aaKnown RBP16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 KIF5AQ12840 1032 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 STK3Q13188 491 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 TMEM266Q2M3C6 531 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 CCDC14Q49A88 953 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 BLOC1S2Q6QNY1 142 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 ARL1P40616 181 aaPredicted RBP16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 NDC80O14777 642 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 APBB1IPQ7Z5R6 666 aaPredicted RBP16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 ATF3P18847 181 aa16.12■□□□□ 0.17
CCDC88A-201ENST00000263630 VPS8Q8N3P4 1428 aa16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 STXBP4Q6ZWJ1 553 aa16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 MAATS1Q7Z4T9 603 aa16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 SF3B2Q13435 895 aaKnown RBP16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 ZSCAN29Q8IWY8 852 aaPredicted RBP16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 SMC1BQ8NDV3 1235 aa16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 MPHOSPH8Q99549 860 aa16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 ESPNB1AK53 854 aa16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 CWC25Q9NXE8 425 aaPredicted RBP16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 CTAGE5O15320 804 aa16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 GSDMDP57764 484 aa16.11■□□□□ 0.17
CCDC88A-201ENST00000263630 URI1O94763 535 aaPredicted RBP16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 PRPF31Q8WWY3 499 aaKnown RBP16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 USP47Q96K76 1375 aa16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 CCDC196A0A1B0GTZ2 297 aa16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 TACC1O75410 805 aa16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 GAS2L2Q8NHY3 880 aa16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 ZSCAN30Q86W11 494 aa16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 L3MBTL2Q969R5 705 aa16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 SEPT10Q9P0V9 454 aa16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 RASAL2Q9UJF2 1139 aa16.1■□□□□ 0.17
CCDC88A-201ENST00000263630 TMOD2Q9NZR1 351 aa16.09■□□□□ 0.17
CCDC88A-201ENST00000263630 CIZ1Q9ULV3 898 aaPredicted RBP16.09■□□□□ 0.17
CCDC88A-201ENST00000263630 MIPOL1Q8TD10 442 aa16.09■□□□□ 0.17
CCDC88A-201ENST00000263630 KIAA0753Q2KHM9 967 aa16.09■□□□□ 0.17
CCDC88A-201ENST00000263630 ST20-MTHFSA0A0A6YYL1 179 aa16.09■□□□□ 0.17
CCDC88A-201ENST00000263630 USP5P45974 858 aa16.09■□□□□ 0.17
CCDC88A-201ENST00000263630 PYM1Q9BRP8 204 aaKnown RBP16.09■□□□□ 0.17
CCDC88A-201ENST00000263630 KIAA1524Q8TCG1 905 aa16.09■□□□□ 0.17
CCDC88A-201ENST00000263630 STIM2Q9P246 746 aa16.09■□□□□ 0.17
CCDC88A-201ENST00000263630 CEP120Q8N960 986 aa16.08■□□□□ 0.17
CCDC88A-201ENST00000263630 TDRD12Q587J7 1177 aaKnown RBP16.08■□□□□ 0.17
CCDC88A-201ENST00000263630 CCT4P50991 539 aaKnown RBP16.08■□□□□ 0.16
CCDC88A-201ENST00000263630 CUL5Q93034 780 aa16.08■□□□□ 0.16
CCDC88A-201ENST00000263630 SNX16P57768 344 aa16.08■□□□□ 0.16
CCDC88A-201ENST00000263630 CBX1P83916 185 aa16.08■□□□□ 0.16
CCDC88A-201ENST00000263630 CUX2O14529 1486 aa16.08■□□□□ 0.16
CCDC88A-201ENST00000263630 PRDM2Q13029 1718 aa16.08■□□□□ 0.16
CCDC88A-201ENST00000263630 AMPD3Q01432 767 aa16.07■□□□□ 0.16
CCDC88A-201ENST00000263630 TTC36A6NLP5 189 aa16.07■□□□□ 0.16
CCDC88A-201ENST00000263630 CCDC174Q6PII3 467 aa16.07■□□□□ 0.16
CCDC88A-201ENST00000263630 FAM184BQ9ULE4 1060 aa16.07■□□□□ 0.16
CCDC88A-201ENST00000263630 PRPHP41219 470 aa16.07■□□□□ 0.16
CCDC88A-201ENST00000263630 LRSAM1Q6UWE0 723 aa16.07■□□□□ 0.16
CCDC88A-201ENST00000263630 PDRG1Q9NUG6 133 aa16.07■□□□□ 0.16
CCDC88A-201ENST00000263630 SH3BP5O60239 455 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 CCDC7Q96M83 1385 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 KIF5BP33176 963 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 SATB1Q01826 763 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 PRPF4BQ13523 1007 aaKnown RBP16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 USH1CQ9Y6N9 552 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 ATP2A1O14983 1001 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 ZBTB16Q05516 673 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 CNGA1P29973 690 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 SELENOOQ9BVL4 669 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 WDR63Q8IWG1 891 aa16.06■□□□□ 0.16
CCDC88A-201ENST00000263630 PLEKHH1Q9ULM0 1364 aa16.05■□□□□ 0.16
CCDC88A-201ENST00000263630 GOLIM4O00461 696 aa16.05■□□□□ 0.16
CCDC88A-201ENST00000263630 CCDC77Q9BR77 488 aa16.05■□□□□ 0.16
CCDC88A-201ENST00000263630 MINK1Q8N4C8 1332 aaPredicted RBP16.05■□□□□ 0.16
CCDC88A-201ENST00000263630 CCDC183Q5T5S1 534 aa16.05■□□□□ 0.16
CCDC88A-201ENST00000263630 GTF2F1P35269 517 aaKnown RBP eCLIP16.05■□□□□ 0.167e-11■■■■□ 23.4
CCDC88A-201ENST00000263630 TBC1D5Q92609 795 aa16.05■□□□□ 0.16
CCDC88A-201ENST00000263630 UBA5Q9GZZ9 404 aa16.05■□□□□ 0.16
CCDC88A-201ENST00000263630 CLIP2Q9UDT6 1046 aa16.05■□□□□ 0.16
CCDC88A-201ENST00000263630 MPHOSPH6Q99547 160 aaKnown RBP16.05■□□□□ 0.16
CCDC88A-201ENST00000263630 DNAJC21Q5F1R6 531 aaKnown RBP16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 PPP1R1BQ9UD71 204 aaPredicted RBP16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 A0A087WZG4 1122 aa16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 ALDH3A1P30838 453 aa16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 NOP2P46087 812 aaKnown RBP16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 U3KPZ7 1027 aaPredicted RBP16.04■□□□□ 0.16
CCDC88A-201ENST00000263630 BRPF3Q9ULD4 1205 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms