RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 STK31Q9BXU1 1019 aa11.18□□□□□ -0.62
MSH4-201ENST00000263187 STRCQ7RTU9 1775 aa11.18□□□□□ -0.62
MSH4-201ENST00000263187 ANXA1P04083 346 aa11.18□□□□□ -0.62
MSH4-201ENST00000263187 LTKP29376 864 aa11.18□□□□□ -0.62
MSH4-201ENST00000263187 KLHL40Q2TBA0 621 aa11.18□□□□□ -0.62
MSH4-201ENST00000263187 LRRFIP2Q9Y608 721 aaKnown RBP11.18□□□□□ -0.62
MSH4-201ENST00000263187 RGS12O14924 1447 aa11.17□□□□□ -0.62
MSH4-201ENST00000263187 REC8O95072 547 aa11.17□□□□□ -0.62
MSH4-201ENST00000263187 EYA1Q99502 592 aa11.17□□□□□ -0.62
MSH4-201ENST00000263187 HMMRO75330 724 aa11.17□□□□□ -0.62
MSH4-201ENST00000263187 CDK12Q9NYV4 1490 aaPredicted RBP11.17□□□□□ -0.62
MSH4-201ENST00000263187 GNAI2P04899 355 aa11.17□□□□□ -0.62
MSH4-201ENST00000263187 NLRP6P59044 892 aa11.17□□□□□ -0.62
MSH4-201ENST00000263187 NUCB2P80303 420 aa11.17□□□□□ -0.62
MSH4-201ENST00000263187 DDX54Q8TDD1 881 aaKnown RBP11.17□□□□□ -0.62
MSH4-201ENST00000263187 TMX3Q96JJ7 454 aa11.17□□□□□ -0.62
MSH4-201ENST00000263187 IL25Q9H293 177 aa11.17□□□□□ -0.62
MSH4-201ENST00000263187 ANKRD26Q9UPS8 1709 aa11.16□□□□□ -0.62
MSH4-201ENST00000263187 FLIIQ13045 1269 aa11.16□□□□□ -0.62
MSH4-201ENST00000263187 PHAXQ9H814 394 aaKnown RBP11.16□□□□□ -0.62
MSH4-201ENST00000263187 DLG5Q8TDM6 1919 aa11.16□□□□□ -0.62
MSH4-201ENST00000263187 SETD1AO15047 1707 aaKnown RBP11.16□□□□□ -0.62
MSH4-201ENST00000263187 AATKQ6ZMQ8 1374 aa11.15□□□□□ -0.62
MSH4-201ENST00000263187 MX1P20591 662 aa11.15□□□□□ -0.62
MSH4-201ENST00000263187 LRRCC1Q9C099 1032 aa11.15□□□□□ -0.62
MSH4-201ENST00000263187 TMEM63CQ9P1W3 806 aa11.15□□□□□ -0.62
MSH4-201ENST00000263187 NRXN3Q9Y4C0 1643 aa11.15□□□□□ -0.62
MSH4-201ENST00000263187 CPA1P15085 419 aa11.14□□□□□ -0.63
MSH4-201ENST00000263187 PTPRCP08575 1304 aa11.14□□□□□ -0.63
MSH4-201ENST00000263187 MSNP26038 577 aaKnown RBP11.14□□□□□ -0.63
MSH4-201ENST00000263187 RBM10P98175 930 aaKnown RBP11.14□□□□□ -0.63
MSH4-201ENST00000263187 XPCQ01831 940 aaPredicted RBP11.14□□□□□ -0.63
MSH4-201ENST00000263187 ESYT1Q9BSJ8 1104 aa11.13□□□□□ -0.63
MSH4-201ENST00000263187 SURF6O75683 361 aaKnown RBP11.13□□□□□ -0.63
MSH4-201ENST00000263187 HSP90AA2PQ14568 343 aaPredicted RBP11.13□□□□□ -0.63
MSH4-201ENST00000263187 AMOTL2Q9Y2J4 779 aa11.13□□□□□ -0.63
MSH4-201ENST00000263187 CDC42BPGQ6DT37 1551 aa11.13□□□□□ -0.63
MSH4-201ENST00000263187 CCT4P50991 539 aaKnown RBP11.13□□□□□ -0.63
MSH4-201ENST00000263187 CCDC173Q0VFZ6 552 aa11.13□□□□□ -0.63
MSH4-201ENST00000263187 KIAA1211Q6ZU35 1233 aa11.13□□□□□ -0.63
MSH4-201ENST00000263187 GADD45BO75293 160 aaPredicted RBP11.12□□□□□ -0.63
MSH4-201ENST00000263187 CYP2E1P05181 493 aaPredicted RBP11.12□□□□□ -0.63
MSH4-201ENST00000263187 HAP1P54257 671 aaPredicted RBP11.12□□□□□ -0.63
MSH4-201ENST00000263187 CRB1P82279 1406 aa11.12□□□□□ -0.63
MSH4-201ENST00000263187 CHMLP26374 656 aa11.11□□□□□ -0.63
MSH4-201ENST00000263187 HDGFP51858 240 aaKnown RBP11.11□□□□□ -0.63
MSH4-201ENST00000263187 IL17REQ8NFR9 667 aa11.11□□□□□ -0.63
MSH4-201ENST00000263187 SPG7Q9UQ90 795 aa11.11□□□□□ -0.63
MSH4-201ENST00000263187 UBTFL1P0CB47 393 aaPredicted RBP11.11□□□□□ -0.63
MSH4-201ENST00000263187 R3HCC1Q9Y3T6 440 aaKnown RBP11.11□□□□□ -0.63
MSH4-201ENST00000263187 KCNQ3O43525 872 aa11.11□□□□□ -0.63
MSH4-201ENST00000263187 PTMSP20962 102 aa11.11□□□□□ -0.63
MSH4-201ENST00000263187 PLCB2Q00722 1185 aa11.11□□□□□ -0.63
MSH4-201ENST00000263187 HDGFL1Q5TGJ6 251 aa11.11□□□□□ -0.63
MSH4-201ENST00000263187 ISY1Q9ULR0 285 aaKnown RBP11.11□□□□□ -0.63
MSH4-201ENST00000263187 CCDC30Q5VVM6 783 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 CWC27Q6UX04 472 aaKnown RBP11.1□□□□□ -0.63
MSH4-201ENST00000263187 PPP1R42Q7Z4L9 355 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 ABTB2Q8N961 1025 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 USP44Q9H0E7 712 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 CWC22Q9HCG8 908 aaKnown RBP11.1□□□□□ -0.63
MSH4-201ENST00000263187 DLC1Q96QB1 1528 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 GNAT3A8MTJ3 354 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 OS9Q13438 667 aaPredicted RBP11.1□□□□□ -0.63
MSH4-201ENST00000263187 ZSCAN30Q86W11 494 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 TMEM2Q9UHN6 1383 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 SRGAP3O43295 1099 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 NBPF7P0C2Y1 421 aaPredicted RBP11.1□□□□□ -0.63
MSH4-201ENST00000263187 UBE2Q2Q8WVN8 375 aa11.1□□□□□ -0.63
MSH4-201ENST00000263187 MCCP23508 829 aa11.09□□□□□ -0.63
MSH4-201ENST00000263187 ATP8B2P98198 1209 aa11.09□□□□□ -0.63
MSH4-201ENST00000263187 LMOD2Q6P5Q4 547 aa11.09□□□□□ -0.63
MSH4-201ENST00000263187 ZNF830Q96NB3 372 aaPredicted RBP11.09□□□□□ -0.63
MSH4-201ENST00000263187 LGR6Q9HBX8 967 aa11.09□□□□□ -0.63
MSH4-201ENST00000263187 KIAA0232Q92628 1395 aa11.09□□□□□ -0.63
MSH4-201ENST00000263187 CHMP3Q9Y3E7 222 aa11.09□□□□□ -0.63
MSH4-201ENST00000263187 PTMAP06454 111 aaKnown RBP11.08□□□□□ -0.64
MSH4-201ENST00000263187 GNAI3P08754 354 aa11.08□□□□□ -0.64
MSH4-201ENST00000263187 ZNF445P59923 1031 aa11.08□□□□□ -0.64
MSH4-201ENST00000263187 VSIG10Q8N0Z9 540 aa11.08□□□□□ -0.64
MSH4-201ENST00000263187 DIP2AQ14689 1571 aa11.08□□□□□ -0.64
MSH4-201ENST00000263187 USP6P35125 1406 aa11.08□□□□□ -0.64
MSH4-201ENST00000263187 TAF7Q15545 349 aaPredicted RBP11.08□□□□□ -0.64
MSH4-201ENST00000263187 PPP1R9BQ96SB3 815 aa11.08□□□□□ -0.64
MSH4-201ENST00000263187 KIF24Q5T7B8 1368 aa11.08□□□□□ -0.64
MSH4-201ENST00000263187 CLEC17AQ6ZS10 378 aa11.08□□□□□ -0.64
MSH4-201ENST00000263187 PLEKHG3A1L390 1219 aa11.07□□□□□ -0.64
MSH4-201ENST00000263187 CHPF2Q9P2E5 772 aa11.07□□□□□ -0.64
MSH4-201ENST00000263187 PI4KAP2A4QPH2 592 aa11.07□□□□□ -0.64
MSH4-201ENST00000263187 USP48Q86UV5 1035 aa11.07□□□□□ -0.64
MSH4-201ENST00000263187 RASEFQ8IZ41 740 aa11.07□□□□□ -0.64
MSH4-201ENST00000263187 PI4KAP1Q8N8J0 262 aa11.07□□□□□ -0.64
MSH4-201ENST00000263187 FAM13BQ9NYF5 915 aa11.07□□□□□ -0.64
MSH4-201ENST00000263187 PA2G4Q9UQ80 394 aaKnown RBP11.07□□□□□ -0.64
MSH4-201ENST00000263187 SOS1Q07889 1333 aaPredicted RBP11.07□□□□□ -0.64
MSH4-201ENST00000263187 MPRIPQ6WCQ1 1025 aa11.06□□□□□ -0.64
MSH4-201ENST00000263187 LRRC59Q96AG4 307 aaKnown RBP11.06□□□□□ -0.64
MSH4-201ENST00000263187 HOXC9P31274 260 aa11.06□□□□□ -0.64
MSH4-201ENST00000263187 LRSAM1Q6UWE0 723 aa11.06□□□□□ -0.64
MSH4-201ENST00000263187 OSBPL3Q9H4L5 887 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms