RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZSCAN29Q8IWY8 852 aaPredicted RBP22.44■■□□□ 1.18
UPF1-201ENST00000262803 NUP133Q8WUM0 1156 aa22.44■■□□□ 1.18
UPF1-201ENST00000262803 AIDAQ96BJ3 306 aa22.44■■□□□ 1.18
UPF1-201ENST00000262803 TMOD3Q9NYL9 352 aa22.44■■□□□ 1.18
UPF1-201ENST00000262803 ERLIN1O75477 346 aa22.43■■□□□ 1.18
UPF1-201ENST00000262803 DMRT2Q9Y5R5 561 aa22.43■■□□□ 1.18
UPF1-201ENST00000262803 FKBP4Q02790 459 aaKnown RBP eCLIP22.43■■□□□ 1.18
UPF1-201ENST00000262803 CEP57L1Q8IYX8 460 aa22.43■■□□□ 1.18
UPF1-201ENST00000262803 KIF1BPQ96EK5 621 aa22.43■■□□□ 1.18
UPF1-201ENST00000262803 CCDC181Q5TID7 509 aa22.43■■□□□ 1.18
UPF1-201ENST00000262803 EHMT1Q9H9B1 1298 aa22.43■■□□□ 1.18
UPF1-201ENST00000262803 PPP1R1BQ9UD71 204 aaPredicted RBP22.43■■□□□ 1.18
UPF1-201ENST00000262803 MX1P20591 662 aa22.42■■□□□ 1.18
UPF1-201ENST00000262803 U3KPZ7 1027 aaPredicted RBP22.42■■□□□ 1.18
UPF1-201ENST00000262803 TEX13AQ9BXU3 409 aaPredicted RBP22.42■■□□□ 1.18
UPF1-201ENST00000262803 NUP62CLQ9H1M0 184 aa22.42■■□□□ 1.18
UPF1-201ENST00000262803 ZPR1O75312 459 aa22.42■■□□□ 1.18
UPF1-201ENST00000262803 TANGO6Q9C0B7 1094 aa22.42■■□□□ 1.18
UPF1-201ENST00000262803 SMARCA5O60264 1052 aaPredicted RBP22.41■■□□□ 1.18
UPF1-201ENST00000262803 WAPLQ7Z5K2 1190 aa22.41■■□□□ 1.18
UPF1-201ENST00000262803 CETN2P41208 172 aa22.41■■□□□ 1.18
UPF1-201ENST00000262803 GLRX3O76003 335 aaKnown RBP22.41■■□□□ 1.18
UPF1-201ENST00000262803 RPRD2Q5VT52 1461 aaKnown RBP22.41■■□□□ 1.18
UPF1-201ENST00000262803 UPF3BQ9BZI7 483 aaKnown RBP22.41■■□□□ 1.18
UPF1-201ENST00000262803 HMGB1P09429 215 aaKnown RBP22.4■■□□□ 1.18
UPF1-201ENST00000262803 CASTP20810 708 aaKnown RBP22.4■■□□□ 1.18
UPF1-201ENST00000262803 PPP4R3AQ6IN85 833 aa22.4■■□□□ 1.18
UPF1-201ENST00000262803 SEC63Q9UGP8 760 aaKnown RBP22.4■■□□□ 1.18
UPF1-201ENST00000262803 NSD2O96028 1365 aa22.4■■□□□ 1.18
UPF1-201ENST00000262803 CCDC112Q8NEF3 446 aa22.4■■□□□ 1.18
UPF1-201ENST00000262803 SEPT7Q16181 437 aaKnown RBP22.39■■□□□ 1.18
UPF1-201ENST00000262803 ZHX3Q9H4I2 956 aa22.39■■□□□ 1.18
UPF1-201ENST00000262803 PLEKHH1Q9ULM0 1364 aa22.39■■□□□ 1.17
UPF1-201ENST00000262803 PLB1Q6P1J6 1458 aa22.39■■□□□ 1.17
UPF1-201ENST00000262803 SYCE3A1L190 88 aa22.39■■□□□ 1.17
UPF1-201ENST00000262803 KIF20AO95235 890 aa22.39■■□□□ 1.17
UPF1-201ENST00000262803 STK11IPQ8N1F8 1099 aa22.39■■□□□ 1.17
UPF1-201ENST00000262803 METTL24Q5JXM2 366 aa22.38■■□□□ 1.17
UPF1-201ENST00000262803 JAKMIP3Q5VZ66 844 aa22.38■■□□□ 1.17
UPF1-201ENST00000262803 ADGRF5Q8IZF2 1346 aa22.38■■□□□ 1.17
UPF1-201ENST00000262803 RAB34Q9BZG1 259 aa22.38■■□□□ 1.17
UPF1-201ENST00000262803 EZRP15311 586 aaKnown RBP22.38■■□□□ 1.17
UPF1-201ENST00000262803 RNF41Q9H4P4 317 aaPredicted RBP22.38■■□□□ 1.17
UPF1-201ENST00000262803 TRIM27P14373 513 aa22.37■■□□□ 1.17
UPF1-201ENST00000262803 TBC1D2Q9BYX2 928 aa22.37■■□□□ 1.17
UPF1-201ENST00000262803 GOLGA6L7A0A1B0GV03 622 aa22.37■■□□□ 1.17
UPF1-201ENST00000262803 EIF3JO75822 258 aaKnown RBP22.37■■□□□ 1.17
UPF1-201ENST00000262803 CD109Q6YHK3 1445 aa22.37■■□□□ 1.17
UPF1-201ENST00000262803 H0YHG0 523 aa22.37■■□□□ 1.17
UPF1-201ENST00000262803 CCDC66A2RUB6 948 aa22.36■■□□□ 1.17
UPF1-201ENST00000262803 NEFHP12036 1026 aa22.36■■□□□ 1.17
UPF1-201ENST00000262803 NME9Q86XW9 330 aa22.36■■□□□ 1.17
UPF1-201ENST00000262803 TAF7Q15545 349 aaPredicted RBP22.36■■□□□ 1.17
UPF1-201ENST00000262803 ZNF397Q8NF99 534 aaPredicted RBP22.36■■□□□ 1.17
UPF1-201ENST00000262803 FGFR1OPO95684 399 aaKnown RBP22.35■■□□□ 1.17
UPF1-201ENST00000262803 EMILIN1Q9Y6C2 1016 aa22.35■■□□□ 1.17
UPF1-201ENST00000262803 SLC5A1P13866 664 aa22.35■■□□□ 1.17
UPF1-201ENST00000262803 TTC21BQ7Z4L5 1316 aa22.35■■□□□ 1.17
UPF1-201ENST00000262803 KIF14Q15058 1648 aa22.35■■□□□ 1.17
UPF1-201ENST00000262803 FERMT3Q86UX7 667 aa22.35■■□□□ 1.17
UPF1-201ENST00000262803 MAP3K12Q12852 859 aa22.35■■□□□ 1.17
UPF1-201ENST00000262803 ZSCAN30Q86W11 494 aa22.34■■□□□ 1.17
UPF1-201ENST00000262803 LEKR1Q6ZMV7 388 aa22.34■■□□□ 1.17
UPF1-201ENST00000262803 DDX11Q96FC9 970 aa22.34■■□□□ 1.17
UPF1-201ENST00000262803 HYPKQ9NX55 129 aa22.34■■□□□ 1.17
UPF1-201ENST00000262803 UQCRHLA0A096LP55 91 aa22.34■■□□□ 1.17
UPF1-201ENST00000262803 UQCRHP07919 91 aa22.34■■□□□ 1.17
UPF1-201ENST00000262803 FILIP1Q7Z7B0 1213 aa22.34■■□□□ 1.17
UPF1-201ENST00000262803 CCDC83Q8IWF9 413 aa22.34■■□□□ 1.17
UPF1-201ENST00000262803 A0A087WZG4 1122 aa22.34■■□□□ 1.17
UPF1-201ENST00000262803 NEBLO76041 1014 aa22.33■■□□□ 1.17
UPF1-201ENST00000262803 USP5P45974 858 aa22.33■■□□□ 1.17
UPF1-201ENST00000262803 MAP3K11Q16584 847 aa22.33■■□□□ 1.17
UPF1-201ENST00000262803 SH2B1Q9NRF2 756 aaPredicted RBP22.33■■□□□ 1.17
UPF1-201ENST00000262803 PRPF40BQ6NWY9 871 aaKnown RBP22.33■■□□□ 1.17
UPF1-201ENST00000262803 CRACR2BQ8N4Y2 399 aaPredicted RBP22.33■■□□□ 1.17
UPF1-201ENST00000262803 TAF4BQ92750 862 aa22.33■■□□□ 1.17
UPF1-201ENST00000262803 IDH1O75874 414 aaKnown RBP22.33■■□□□ 1.16
UPF1-201ENST00000262803 TSG101Q99816 390 aa22.33■■□□□ 1.16
UPF1-201ENST00000262803 CUL7Q14999 1698 aa22.33■■□□□ 1.16
UPF1-201ENST00000262803 F6X3S4 739 aa22.33■■□□□ 1.16
UPF1-201ENST00000262803 XPCQ01831 940 aaPredicted RBP22.33■■□□□ 1.16
UPF1-201ENST00000262803 CUL5Q93034 780 aa22.33■■□□□ 1.16
UPF1-201ENST00000262803 FAM135AQ9P2D6 1515 aa22.32■■□□□ 1.16
UPF1-201ENST00000262803 KIF2AO00139 706 aaPredicted RBP22.32■■□□□ 1.16
UPF1-201ENST00000262803 POLR3DP05423 398 aaPredicted RBP22.32■■□□□ 1.16
UPF1-201ENST00000262803 ZC3H6P61129 1189 aaKnown RBP22.31■■□□□ 1.16
UPF1-201ENST00000262803 AXDND1Q5T1B0 1012 aaPredicted RBP22.31■■□□□ 1.16
UPF1-201ENST00000262803 LDHCP07864 332 aa22.31■■□□□ 1.16
UPF1-201ENST00000262803 PYM1Q9BRP8 204 aaKnown RBP22.31■■□□□ 1.16
UPF1-201ENST00000262803 FBXO3Q9UK99 471 aa22.31■■□□□ 1.16
UPF1-201ENST00000262803 SCAF11Q99590 1463 aaKnown RBP22.31■■□□□ 1.16
UPF1-201ENST00000262803 SSBP05455 408 aaKnown RBP eCLIP22.3■■□□□ 1.16
UPF1-201ENST00000262803 MATR3P43243 847 aaKnown RBP eCLIP22.3■■□□□ 1.16
UPF1-201ENST00000262803 CTCFLQ8NI51 663 aaPredicted RBP22.3■■□□□ 1.16
UPF1-201ENST00000262803 PHF8Q9UPP1 1060 aa22.3■■□□□ 1.16
UPF1-201ENST00000262803 GBP2P32456 591 aaPredicted RBP22.3■■□□□ 1.16
UPF1-201ENST00000262803 SSFA2P28290 1259 aa22.3■■□□□ 1.16
UPF1-201ENST00000262803 PPP4R3BQ5MIZ7 849 aa22.3■■□□□ 1.16
UPF1-201ENST00000262803 IFIT5Q13325 482 aaKnown RBP22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms