RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.91□□□□□ -1.141e-6■□□□□ 9.3
TOPBP1-201ENST00000260810 C19orf44Q9H6X5 657 aa7.91□□□□□ -1.14
TOPBP1-201ENST00000260810 ANKLE2Q86XL3 938 aa7.91□□□□□ -1.14
TOPBP1-201ENST00000260810 RBAK-RBAKDNI3L0D1 243 aa7.91□□□□□ -1.14
TOPBP1-201ENST00000260810 CASP7P55210 303 aa7.91□□□□□ -1.14
TOPBP1-201ENST00000260810 TMF1P82094 1093 aa7.91□□□□□ -1.14
TOPBP1-201ENST00000260810 EVC2Q86UK5 1308 aa7.9□□□□□ -1.14
TOPBP1-201ENST00000260810 TCHHQ07283 1943 aa7.9□□□□□ -1.14
TOPBP1-201ENST00000260810 VAMP4O75379 141 aa7.9□□□□□ -1.14
TOPBP1-201ENST00000260810 TCP11L2Q8N4U5 519 aa7.9□□□□□ -1.14
TOPBP1-201ENST00000260810 CHGAP10645 457 aaKnown RBP7.9□□□□□ -1.14
TOPBP1-201ENST00000260810 PARP14Q460N5 1801 aa7.9□□□□□ -1.14
TOPBP1-201ENST00000260810 TMPOP42166 694 aaKnown RBP7.9□□□□□ -1.14
TOPBP1-201ENST00000260810 IRS2Q9Y4H2 1338 aa7.9□□□□□ -1.15
TOPBP1-201ENST00000260810 BCL9O00512 1426 aa7.9□□□□□ -1.15
TOPBP1-201ENST00000260810 MSH5O43196 834 aa7.9□□□□□ -1.15
TOPBP1-201ENST00000260810 FANCIQ9NVI1 1328 aa7.9□□□□□ -1.15
TOPBP1-201ENST00000260810 NBPF26B4DH59 902 aa7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 CHGBP05060 677 aa7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 NBPF14Q5TI25 921 aa7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 NBPF10Q6P3W6 841 aaKnown RBP7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 NBPF15Q8N660 670 aa7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 CCDC88AQ3V6T2 1871 aa7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 PLPPR3Q6T4P5 718 aa7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 CHL1O00533 1208 aa7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 TNNT2P45379 298 aaPredicted RBP7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 MIS18AQ9NYP9 233 aa7.89□□□□□ -1.15
TOPBP1-201ENST00000260810 LARP1Q6PKG0 1096 aaKnown RBP7.88□□□□□ -1.15
TOPBP1-201ENST00000260810 MYH13Q9UKX3 1938 aa7.88□□□□□ -1.15
TOPBP1-201ENST00000260810 SEC24BO95487 1268 aa7.88□□□□□ -1.15
TOPBP1-201ENST00000260810 PHF8Q9UPP1 1060 aa7.87□□□□□ -1.15
TOPBP1-201ENST00000260810 CSMD2Q7Z408 3487 aa7.87□□□□□ -1.15
TOPBP1-201ENST00000260810 HMOX1P09601 288 aa7.87□□□□□ -1.15
TOPBP1-201ENST00000260810 MBIPQ9NS73 344 aa7.87□□□□□ -1.15
TOPBP1-201ENST00000260810 LRRC4BQ9NT99 713 aa7.87□□□□□ -1.15
TOPBP1-201ENST00000260810 CHRNA2Q15822 529 aa7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 GREB1LQ9C091 1923 aaPredicted RBP7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 RTL1A6NKG5 1358 aa7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 FLT4P35916 1363 aa7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 PDE4AP27815 886 aa7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 NKX1-1Q15270 411 aaPredicted RBP7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 FOXP2O15409 715 aa7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 RARSP54136 660 aaKnown RBP7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 MCM10Q7L590 875 aa7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 FNBP4Q8N3X1 1017 aaPredicted RBP7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 RLFQ13129 1914 aa7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 SLX4Q8IY92 1834 aa7.86□□□□□ -1.15
TOPBP1-201ENST00000260810 KIF24Q5T7B8 1368 aa7.85□□□□□ -1.15
TOPBP1-201ENST00000260810 IP6K1Q92551 441 aa7.85□□□□□ -1.15
TOPBP1-201ENST00000260810 BRPF1P55201 1214 aaPredicted RBP7.85□□□□□ -1.15
TOPBP1-201ENST00000260810 IRX6P78412 446 aaPredicted RBP7.85□□□□□ -1.15
TOPBP1-201ENST00000260810 MARCH10Q8NA82 808 aaPredicted RBP7.85□□□□□ -1.15
TOPBP1-201ENST00000260810 MYH15Q9Y2K3 1946 aa7.84□□□□□ -1.15
TOPBP1-201ENST00000260810 PHIPQ8WWQ0 1821 aa7.84□□□□□ -1.15
TOPBP1-201ENST00000260810 COL1A1P02452 1464 aaPredicted RBP7.84□□□□□ -1.15
TOPBP1-201ENST00000260810 RALBP1Q15311 655 aa7.84□□□□□ -1.15
TOPBP1-201ENST00000260810 KIF2CQ99661 725 aa7.84□□□□□ -1.15
TOPBP1-201ENST00000260810 KCNQ2O43526 872 aa7.84□□□□□ -1.15
TOPBP1-201ENST00000260810 RBBP6Q7Z6E9 1792 aaKnown RBP7.84□□□□□ -1.15
TOPBP1-201ENST00000260810 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.84□□□□□ -1.16
TOPBP1-201ENST00000260810 LCTP09848 1927 aa7.83□□□□□ -1.16
TOPBP1-201ENST00000260810 PALLDQ8WX93 1383 aa7.83□□□□□ -1.16
TOPBP1-201ENST00000260810 NCBP3Q53F19 620 aaKnown RBP7.83□□□□□ -1.16
TOPBP1-201ENST00000260810 PELP1Q8IZL8 1130 aaKnown RBP7.83□□□□□ -1.16
TOPBP1-201ENST00000260810 BCL2L12Q9HB09 334 aa7.82□□□□□ -1.16
TOPBP1-201ENST00000260810 SSH1Q8WYL5 1049 aa7.82□□□□□ -1.16
TOPBP1-201ENST00000260810 GTF3C3Q9Y5Q9 886 aa7.82□□□□□ -1.16
TOPBP1-201ENST00000260810 ABCC4O15439 1325 aa7.82□□□□□ -1.16
TOPBP1-201ENST00000260810 FAM9BQ8IZU0 186 aa7.82□□□□□ -1.16
TOPBP1-201ENST00000260810 TTC21AQ8NDW8 1320 aa7.82□□□□□ -1.16
TOPBP1-201ENST00000260810 SYNE4Q8N205 404 aa7.82□□□□□ -1.16
TOPBP1-201ENST00000260810 FAM182BQ5T319 152 aa7.81□□□□□ -1.16
TOPBP1-201ENST00000260810 HSPA1LP34931 641 aa7.81□□□□□ -1.16
TOPBP1-201ENST00000260810 CNGB1Q14028 1251 aaPredicted RBP7.81□□□□□ -1.16
TOPBP1-201ENST00000260810 ATMQ13315 3056 aa7.81□□□□□ -1.16
TOPBP1-201ENST00000260810 IGKV5-2P06315 115 aa7.81□□□□□ -1.16
TOPBP1-201ENST00000260810 PRKAR2BP31323 418 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 EPHA10Q5JZY3 1008 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 MRS2Q9HD23 443 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 C3orf67Q6ZVT6 689 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 KRT28Q7Z3Y7 464 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 EXOC6Q8TAG9 804 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 VPS13CQ709C8 3753 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 TRIM27P14373 513 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 KCNQ4P56696 695 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 WDR81Q562E7 1941 aa7.8□□□□□ -1.16
TOPBP1-201ENST00000260810 YTHDC1Q96MU7 727 aaKnown RBP7.79□□□□□ -1.16
TOPBP1-201ENST00000260810 TACC3Q9Y6A5 838 aa7.79□□□□□ -1.16
TOPBP1-201ENST00000260810 BAZ2AQ9UIF9 1905 aaKnown RBP7.79□□□□□ -1.16
TOPBP1-201ENST00000260810 SPATA31A1Q5TZJ5 1347 aa7.79□□□□□ -1.16
TOPBP1-201ENST00000260810 ZBTB7BO15156 539 aaPredicted RBP7.79□□□□□ -1.16
TOPBP1-201ENST00000260810 CGNL1Q0VF96 1302 aa7.78□□□□□ -1.16
TOPBP1-201ENST00000260810 PHAXQ9H814 394 aaKnown RBP7.78□□□□□ -1.16
TOPBP1-201ENST00000260810 POTEAQ6S8J7 498 aa7.78□□□□□ -1.16
TOPBP1-201ENST00000260810 SRPK2P78362 688 aaKnown RBP7.78□□□□□ -1.16
TOPBP1-201ENST00000260810 ITPK1Q13572 414 aa7.78□□□□□ -1.16
TOPBP1-201ENST00000260810 MRPL50Q8N5N7 158 aaKnown RBP7.78□□□□□ -1.16
TOPBP1-201ENST00000260810 CSMD1Q96PZ7 3565 aa7.78□□□□□ -1.16
TOPBP1-201ENST00000260810 ZNF384Q8TF68 577 aa7.77□□□□□ -1.17
TOPBP1-201ENST00000260810 USP16Q9Y5T5 823 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms