RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 RGS12O14924 1447 aa18.89■□□□□ 0.61
CCDC47-201ENST00000225726 CCDC30Q5VVM6 783 aa18.88■□□□□ 0.61
CCDC47-201ENST00000225726 CACNA1FO60840 1977 aa18.88■□□□□ 0.61
CCDC47-201ENST00000225726 RBM19Q9Y4C8 960 aaKnown RBP18.88■□□□□ 0.61
CCDC47-201ENST00000225726 SLC4A2P04920 1241 aa18.87■□□□□ 0.61
CCDC47-201ENST00000225726 BTBD11A6QL63 1104 aa18.87■□□□□ 0.61
CCDC47-201ENST00000225726 STK31Q9BXU1 1019 aa18.87■□□□□ 0.61
CCDC47-201ENST00000225726 EIF4A1P60842 406 aaKnown RBP18.87■□□□□ 0.61
CCDC47-201ENST00000225726 HOXB7P09629 217 aa18.86■□□□□ 0.61
CCDC47-201ENST00000225726 PHKG2P15735 406 aa18.86■□□□□ 0.61
CCDC47-201ENST00000225726 ZBTB7BO15156 539 aaPredicted RBP18.85■□□□□ 0.61
CCDC47-201ENST00000225726 TOM1L2Q6ZVM7 507 aa18.85■□□□□ 0.61
CCDC47-201ENST00000225726 IFNL2Q8IZJ0 200 aa18.85■□□□□ 0.61
CCDC47-201ENST00000225726 INTS3Q68E01 1043 aaKnown RBP18.85■□□□□ 0.61
CCDC47-201ENST00000225726 KDM6AO15550 1401 aaPredicted RBP18.85■□□□□ 0.61
CCDC47-201ENST00000225726 COL14A1Q05707 1796 aaKnown RBP18.85■□□□□ 0.61
CCDC47-201ENST00000225726 HDAC1Q13547 482 aaPredicted RBP18.84■□□□□ 0.61
CCDC47-201ENST00000225726 CHMP4AQ9BY43 222 aa18.84■□□□□ 0.61
CCDC47-201ENST00000225726 CARD10Q9BWT7 1032 aa18.84■□□□□ 0.61
CCDC47-201ENST00000225726 PHLPP1O60346 1717 aa18.84■□□□□ 0.61
CCDC47-201ENST00000225726 MRC1P22897 1456 aa18.83■□□□□ 0.61
CCDC47-201ENST00000225726 SKAP1Q86WV1 359 aa18.83■□□□□ 0.6
CCDC47-201ENST00000225726 HSP90AB1P08238 724 aaKnown RBP18.82■□□□□ 0.6
CCDC47-201ENST00000225726 COL16A1Q07092 1604 aaPredicted RBP18.82■□□□□ 0.6
CCDC47-201ENST00000225726 HDGFL1Q5TGJ6 251 aa18.82■□□□□ 0.6
CCDC47-201ENST00000225726 KCNQ3O43525 872 aa18.81■□□□□ 0.6
CCDC47-201ENST00000225726 EVA1CP58658 441 aa18.81■□□□□ 0.6
CCDC47-201ENST00000225726 G2E3Q7L622 706 aa18.81■□□□□ 0.6
CCDC47-201ENST00000225726 DCAF5Q96JK2 942 aa18.81■□□□□ 0.6
CCDC47-201ENST00000225726 SLC52A2Q9HAB3 445 aa18.81■□□□□ 0.6
CCDC47-201ENST00000225726 CYP27B1O15528 508 aa18.8■□□□□ 0.6
CCDC47-201ENST00000225726 HEG1Q9ULI3 1381 aa18.8■□□□□ 0.6
CCDC47-201ENST00000225726 STRN4Q9NRL3 753 aa18.8■□□□□ 0.6
CCDC47-201ENST00000225726 LARP1Q6PKG0 1096 aaKnown RBP18.79■□□□□ 0.6
CCDC47-201ENST00000225726 N4BP2Q86UW6 1770 aaPredicted RBP18.79■□□□□ 0.6
CCDC47-201ENST00000225726 FLIIQ13045 1269 aa18.79■□□□□ 0.6
CCDC47-201ENST00000225726 NECTIN2Q92692 538 aa18.79■□□□□ 0.6
CCDC47-201ENST00000225726 PCDH11XQ9BZA7 1347 aa18.79■□□□□ 0.6
CCDC47-201ENST00000225726 PCDH11YQ9BZA8 1340 aa18.79■□□□□ 0.6
CCDC47-201ENST00000225726 IL2RBP14784 551 aa18.78■□□□□ 0.6
CCDC47-201ENST00000225726 ZCRB1Q8TBF4 217 aaKnown RBP18.78■□□□□ 0.6
CCDC47-201ENST00000225726 TOM1O60784 492 aa18.77■□□□□ 0.6
CCDC47-201ENST00000225726 SHANK3Q9BYB0 1731 aa18.77■□□□□ 0.6
CCDC47-201ENST00000225726 CCT4P50991 539 aaKnown RBP18.77■□□□□ 0.59
CCDC47-201ENST00000225726 PXDNLA1KZ92 1463 aa18.77■□□□□ 0.59
CCDC47-201ENST00000225726 RGS3P49796 1198 aa18.76■□□□□ 0.59
CCDC47-201ENST00000225726 BTG4Q9NY30 223 aa18.76■□□□□ 0.59
CCDC47-201ENST00000225726 PDZRN3Q9UPQ7 1066 aa18.76■□□□□ 0.59
CCDC47-201ENST00000225726 GIGYF1O75420 1035 aaPredicted RBP18.75■□□□□ 0.59
CCDC47-201ENST00000225726 EIF2S2P20042 333 aaKnown RBP18.75■□□□□ 0.59
CCDC47-201ENST00000225726 FKBP5Q13451 457 aaPredicted RBP18.75■□□□□ 0.59
CCDC47-201ENST00000225726 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.75■□□□□ 0.59
CCDC47-201ENST00000225726 PDE4AP27815 886 aa18.75■□□□□ 0.59
CCDC47-201ENST00000225726 SMC5Q8IY18 1101 aa18.75■□□□□ 0.59
CCDC47-201ENST00000225726 ZNF790Q6PG37 636 aa18.74■□□□□ 0.59
CCDC47-201ENST00000225726 NFATC2IPQ8NCF5 419 aa18.74■□□□□ 0.59
CCDC47-201ENST00000225726 C1orf115Q9H7X2 142 aa18.74■□□□□ 0.59
CCDC47-201ENST00000225726 RTN4Q9NQC3 1192 aaKnown RBP18.74■□□□□ 0.59
CCDC47-201ENST00000225726 PLCH1Q4KWH8 1693 aa18.74■□□□□ 0.59
CCDC47-201ENST00000225726 F6X3S4 739 aa18.73■□□□□ 0.59
CCDC47-201ENST00000225726 BACH2Q9BYV9 841 aa18.73■□□□□ 0.59
CCDC47-201ENST00000225726 CHPF2Q9P2E5 772 aa18.73■□□□□ 0.59
CCDC47-201ENST00000225726 NKX1-1Q15270 411 aaPredicted RBP18.72■□□□□ 0.59
CCDC47-201ENST00000225726 SLC4A10Q6U841 1118 aa18.72■□□□□ 0.59
CCDC47-201ENST00000225726 C5P01031 1676 aa18.72■□□□□ 0.59
CCDC47-201ENST00000225726 CABP4P57796 275 aa18.72■□□□□ 0.59
CCDC47-201ENST00000225726 DBF4Q9UBU7 674 aaPredicted RBP18.71■□□□□ 0.59
CCDC47-201ENST00000225726 PHAXQ9H814 394 aaKnown RBP18.71■□□□□ 0.59
CCDC47-201ENST00000225726 SLC39A6Q13433 755 aa18.7■□□□□ 0.58
CCDC47-201ENST00000225726 PIP4K2BP78356 416 aa18.7■□□□□ 0.58
CCDC47-201ENST00000225726 GCC1Q96CN9 775 aa18.7■□□□□ 0.58
CCDC47-201ENST00000225726 WNK3Q9BYP7 1800 aa18.7■□□□□ 0.58
CCDC47-201ENST00000225726 DISP2A7MBM2 1401 aa18.7■□□□□ 0.58
CCDC47-201ENST00000225726 ERVV-2B6SEH9 535 aa18.7■□□□□ 0.58
CCDC47-201ENST00000225726 ATP10DQ9P241 1426 aa18.7■□□□□ 0.58
CCDC47-201ENST00000225726 SIRT2Q8IXJ6 389 aa18.69■□□□□ 0.58
CCDC47-201ENST00000225726 MEIS3Q99687 375 aa18.69■□□□□ 0.58
CCDC47-201ENST00000225726 NRAPQ86VF7 1730 aa18.69■□□□□ 0.58
CCDC47-201ENST00000225726 TTC5Q8N0Z6 440 aa18.69■□□□□ 0.58
CCDC47-201ENST00000225726 FAM161AQ3B820 660 aa18.69■□□□□ 0.58
CCDC47-201ENST00000225726 PAPPAQ13219 1627 aa18.69■□□□□ 0.58
CCDC47-201ENST00000225726 RPAP2Q8IXW5 612 aaPredicted RBP18.68■□□□□ 0.58
CCDC47-201ENST00000225726 ANKRD44Q8N8A2 993 aa18.68■□□□□ 0.58
CCDC47-201ENST00000225726 PRAMEF22A3QJZ6 481 aa18.67■□□□□ 0.58
CCDC47-201ENST00000225726 NUCB1Q02818 461 aa18.67■□□□□ 0.58
CCDC47-201ENST00000225726 FMNL2Q96PY5 1086 aa18.67■□□□□ 0.58
CCDC47-201ENST00000225726 HYPKQ9NX55 129 aa18.67■□□□□ 0.58
CCDC47-201ENST00000225726 USP35Q9P2H5 1018 aa18.67■□□□□ 0.58
CCDC47-201ENST00000225726 LAMB4A4D0S4 1761 aa18.67■□□□□ 0.58
CCDC47-201ENST00000225726 UBR2Q8IWV8 1755 aa18.66■□□□□ 0.58
CCDC47-201ENST00000225726 GLI3P10071 1580 aa18.66■□□□□ 0.58
CCDC47-201ENST00000225726 DDX54Q8TDD1 881 aaKnown RBP18.66■□□□□ 0.58
CCDC47-201ENST00000225726 ZNF496Q96IT1 587 aaPredicted RBP18.66■□□□□ 0.58
CCDC47-201ENST00000225726 UBAP1LF5GYI3 381 aa18.66■□□□□ 0.58
CCDC47-201ENST00000225726 CEP85Q6P2H3 762 aa18.66■□□□□ 0.58
CCDC47-201ENST00000225726 TOGARAM1Q9Y4F4 1720 aa18.66■□□□□ 0.58
CCDC47-201ENST00000225726 GNAI3P08754 354 aa18.66■□□□□ 0.58
CCDC47-201ENST00000225726 SNRPA1P09661 255 aaKnown RBP18.65■□□□□ 0.58
CCDC47-201ENST00000225726 DDX21Q9NR30 783 aaKnown RBP eCLIP18.65■□□□□ 0.58
CCDC47-201ENST00000225726 NWD2Q9ULI1 1742 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms