RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SYCE3A1L190 88 aa13.16□□□□□ -0.3
USP28-201ENST00000003302 GADD45BO75293 160 aaPredicted RBP13.16□□□□□ -0.3
USP28-201ENST00000003302 FKBP5Q13451 457 aaPredicted RBP13.16□□□□□ -0.3
USP28-201ENST00000003302 TMX3Q96JJ7 454 aa13.16□□□□□ -0.3
USP28-201ENST00000003302 CIZ1Q9ULV3 898 aaPredicted RBP13.16□□□□□ -0.3
USP28-201ENST00000003302 USP6P35125 1406 aa13.16□□□□□ -0.3
USP28-201ENST00000003302 PRAMEF22A3QJZ6 481 aa13.15□□□□□ -0.3
USP28-201ENST00000003302 SRCAPQ6ZRS2 3230 aa13.15□□□□□ -0.3
USP28-201ENST00000003302 KLHL40Q2TBA0 621 aa13.15□□□□□ -0.3
USP28-201ENST00000003302 FLIIQ13045 1269 aa13.15□□□□□ -0.3
USP28-201ENST00000003302 NBPF7P0C2Y1 421 aaPredicted RBP13.15□□□□□ -0.31
USP28-201ENST00000003302 CALD1Q05682 793 aaKnown RBP13.15□□□□□ -0.31
USP28-201ENST00000003302 USP44Q9H0E7 712 aa13.15□□□□□ -0.31
USP28-201ENST00000003302 ITSN1Q15811 1721 aa13.14□□□□□ -0.31
USP28-201ENST00000003302 RABEP1Q15276 862 aa13.14□□□□□ -0.31
USP28-201ENST00000003302 RPAP2Q8IXW5 612 aaPredicted RBP13.14□□□□□ -0.31
USP28-201ENST00000003302 LGR6Q9HBX8 967 aa13.14□□□□□ -0.31
USP28-201ENST00000003302 RGPD1P0DJD0 1748 aa13.14□□□□□ -0.31
USP28-201ENST00000003302 TRIM6-TRIM34B2RNG4 842 aa13.14□□□□□ -0.31
USP28-201ENST00000003302 ANO2Q9NQ90 1003 aa13.14□□□□□ -0.31
USP28-201ENST00000003302 NRKQ7Z2Y5 1582 aa13.14□□□□□ -0.31
USP28-201ENST00000003302 EIF2S2P20042 333 aaKnown RBP13.13□□□□□ -0.31
USP28-201ENST00000003302 LMOD3Q0VAK6 560 aa13.13□□□□□ -0.31
USP28-201ENST00000003302 ARID3AQ99856 593 aa13.13□□□□□ -0.31
USP28-201ENST00000003302 AMOTL2Q9Y2J4 779 aa13.13□□□□□ -0.31
USP28-201ENST00000003302 XPCQ01831 940 aaPredicted RBP13.12□□□□□ -0.31
USP28-201ENST00000003302 RASEFQ8IZ41 740 aa13.12□□□□□ -0.31
USP28-201ENST00000003302 TMEM2Q9UHN6 1383 aa13.12□□□□□ -0.31
USP28-201ENST00000003302 TUBGCP6Q96RT7 1819 aa13.12□□□□□ -0.31
USP28-201ENST00000003302 CHGBP05060 677 aa13.12□□□□□ -0.31
USP28-201ENST00000003302 CLEC17AQ6ZS10 378 aa13.12□□□□□ -0.31
USP28-201ENST00000003302 ESYT1Q9BSJ8 1104 aa13.12□□□□□ -0.31
USP28-201ENST00000003302 SOS1Q07889 1333 aaPredicted RBP13.11□□□□□ -0.31
USP28-201ENST00000003302 ERC2O15083 957 aa13.11□□□□□ -0.31
USP28-201ENST00000003302 LARGE1O95461 756 aa13.11□□□□□ -0.31
USP28-201ENST00000003302 CHMLP26374 656 aa13.11□□□□□ -0.31
USP28-201ENST00000003302 SSH2Q76I76 1423 aa13.11□□□□□ -0.31
USP28-201ENST00000003302 AMPHP49418 695 aa13.11□□□□□ -0.31
USP28-201ENST00000003302 NLRP6P59044 892 aa13.11□□□□□ -0.31
USP28-201ENST00000003302 KIAA0232Q92628 1395 aa13.11□□□□□ -0.31
USP28-201ENST00000003302 MX1P20591 662 aa13.1□□□□□ -0.31
USP28-201ENST00000003302 REREQ9P2R6 1566 aa13.1□□□□□ -0.31
USP28-201ENST00000003302 LRRC59Q96AG4 307 aaKnown RBP13.1□□□□□ -0.31
USP28-201ENST00000003302 SPG7Q9UQ90 795 aa13.1□□□□□ -0.31
USP28-201ENST00000003302 NGDNQ8NEJ9 315 aaKnown RBP13.1□□□□□ -0.31
USP28-201ENST00000003302 TAF6LQ9Y6J9 622 aa13.1□□□□□ -0.31
USP28-201ENST00000003302 RBM10P98175 930 aaKnown RBP13.1□□□□□ -0.31
USP28-201ENST00000003302 TECPR2O15040 1411 aa13.09□□□□□ -0.31
USP28-201ENST00000003302 C17orf53Q8N3J3 647 aaPredicted RBP13.09□□□□□ -0.31
USP28-201ENST00000003302 TRIM44Q96DX7 344 aaPredicted RBP13.09□□□□□ -0.31
USP28-201ENST00000003302 PLEKHG3A1L390 1219 aa13.09□□□□□ -0.31
USP28-201ENST00000003302 PROSER3Q2NL68 480 aa13.09□□□□□ -0.31
USP28-201ENST00000003302 C14orf37Q86TY3 774 aa13.09□□□□□ -0.31
USP28-201ENST00000003302 ZNF830Q96NB3 372 aaPredicted RBP13.09□□□□□ -0.31
USP28-201ENST00000003302 PTPRCP08575 1304 aa13.09□□□□□ -0.31
USP28-201ENST00000003302 GNAI2P04899 355 aa13.09□□□□□ -0.31
USP28-201ENST00000003302 RTF1Q92541 710 aaKnown RBP13.09□□□□□ -0.31
USP28-201ENST00000003302 TSC1Q92574 1164 aa13.09□□□□□ -0.31
USP28-201ENST00000003302 PA2G4Q9UQ80 394 aaKnown RBP13.08□□□□□ -0.32
USP28-201ENST00000003302 IGSF1Q8N6C5 1336 aa13.08□□□□□ -0.32
USP28-201ENST00000003302 PPP1R42Q7Z4L9 355 aa13.08□□□□□ -0.32
USP28-201ENST00000003302 PPP1R9BQ96SB3 815 aa13.08□□□□□ -0.32
USP28-201ENST00000003302 LRRCC1Q9C099 1032 aa13.08□□□□□ -0.32
USP28-201ENST00000003302 USP31Q70CQ4 1352 aa13.08□□□□□ -0.32
USP28-201ENST00000003302 PIK3C2AO00443 1686 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 KCNA6P17658 529 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 KIAA1211Q6ZU35 1233 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 TNRQ92752 1358 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 TCEANC2Q96MN5 208 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 UBR1Q8IWV7 1749 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 NWD1Q149M9 1564 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 HOXC9P31274 260 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 UBE2Q2Q8WVN8 375 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 ESF1Q9H501 851 aaKnown RBP13.07□□□□□ -0.32
USP28-201ENST00000003302 NALCNQ8IZF0 1738 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 XRN1Q8IZH2 1706 aaKnown RBP13.07□□□□□ -0.32
USP28-201ENST00000003302 ZNF445P59923 1031 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 ADCK5Q3MIX3 580 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 OSBPL3Q9H4L5 887 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 CHPF2Q9P2E5 772 aa13.07□□□□□ -0.32
USP28-201ENST00000003302 KDRP35968 1356 aa13.06□□□□□ -0.32
USP28-201ENST00000003302 IBTKQ9P2D0 1353 aaPredicted RBP13.06□□□□□ -0.32
USP28-201ENST00000003302 PIP4K2AP48426 406 aaPredicted RBP13.06□□□□□ -0.32
USP28-201ENST00000003302 NBPF6Q5VWK0 638 aa13.06□□□□□ -0.32
USP28-201ENST00000003302 PI4K2BQ8TCG2 481 aa13.06□□□□□ -0.32
USP28-201ENST00000003302 NBPF4Q96M43 638 aa13.06□□□□□ -0.32
USP28-201ENST00000003302 NDUFB9Q9Y6M9 179 aa13.06□□□□□ -0.32
USP28-201ENST00000003302 KLHDC4Q8TBB5 520 aa13.06□□□□□ -0.32
USP28-201ENST00000003302 ST18O60284 1047 aa13.06□□□□□ -0.32
USP28-201ENST00000003302 TOPAZ1Q8N9V7 1692 aa13.05□□□□□ -0.32
USP28-201ENST00000003302 FAM177BA6PVY3 158 aa13.05□□□□□ -0.32
USP28-201ENST00000003302 SURF6O75683 361 aaKnown RBP13.05□□□□□ -0.32
USP28-201ENST00000003302 ATP8B2P98198 1209 aa13.05□□□□□ -0.32
USP28-201ENST00000003302 FAM173BQ6P4H8 233 aa13.05□□□□□ -0.32
USP28-201ENST00000003302 BRD1O95696 1058 aa13.05□□□□□ -0.32
USP28-201ENST00000003302 CWC27Q6UX04 472 aaKnown RBP13.05□□□□□ -0.32
USP28-201ENST00000003302 PI4KAP2A4QPH2 592 aa13.05□□□□□ -0.32
USP28-201ENST00000003302 PI4KAP1Q8N8J0 262 aa13.05□□□□□ -0.32
USP28-201ENST00000003302 MPRIPQ6WCQ1 1025 aa13.04□□□□□ -0.32
USP28-201ENST00000003302 AGLP35573 1532 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms