RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Ksr2Q3UVC0 959 aa10.83□□□□□ -0.68
Trim39-205ENSMUST00000173369 Hdac6Q9Z2V5 1149 aa10.83□□□□□ -0.68
Trim39-205ENSMUST00000173369 Fkbp4P30416 458 aa10.82□□□□□ -0.68
Trim39-205ENSMUST00000173369 Miga2Q8BK03 593 aa10.82□□□□□ -0.68
Trim39-205ENSMUST00000173369 Usp16Q99LG0 825 aa10.82□□□□□ -0.68
Trim39-205ENSMUST00000173369 Apbb1Q9QXJ1 710 aa10.82□□□□□ -0.68
Trim39-205ENSMUST00000173369 Ppp6r1Q7TSI3 856 aa10.82□□□□□ -0.68
Trim39-205ENSMUST00000173369 Slfnl1Q8BHW9 410 aa10.82□□□□□ -0.68
Trim39-205ENSMUST00000173369 Ccdc30Q8BVF4 654 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Chrna2Q91X60 512 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Snapc4Q8BP86 1333 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Vps33bP59016 617 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Smg7Q5RJH6 1138 aaKnown RBP10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Ankrd13dQ6PD24 605 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Slc39a6Q8C145 765 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Tmem132aQ922P8 1018 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Efcab2Q9CQ46 164 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Tns2Q8CGB6 1400 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Spef2Q8C9J3 1734 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Arhgap33Q80YF9 1305 aa10.81□□□□□ -0.68
Trim39-205ENSMUST00000173369 Cyp2d12Q8BVD2 504 aa10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Ccdc9Q8VC31 543 aaKnown RBP10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Ipo4Q8VI75 1082 aa10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Atg3Q9CPX6 314 aa10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Syde2E9PUP1 1314 aa10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Adgrb1Q3UHD1 1582 aa10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Cnnm1Q0GA42 951 aa10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Q3TQI7 289 aaKnown RBP10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Pim2Q62070 370 aa10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Sos1Q62245 1319 aa10.8□□□□□ -0.68
Trim39-205ENSMUST00000173369 Rbm25B2RY56 838 aaKnown RBP10.79□□□□□ -0.68
Trim39-205ENSMUST00000173369 Dcaf5Q80T85 946 aa10.79□□□□□ -0.68
Trim39-205ENSMUST00000173369 Cdc37l1Q9CZP7 335 aa10.79□□□□□ -0.68
Trim39-205ENSMUST00000173369 Ccdc6D3YZP9 469 aa10.79□□□□□ -0.68
Trim39-205ENSMUST00000173369 Ccdc85cE9Q6B2 420 aa10.79□□□□□ -0.68
Trim39-205ENSMUST00000173369 Mst1rQ62190 1378 aa10.79□□□□□ -0.68
Trim39-205ENSMUST00000173369 Hoxd11P23813 323 aa10.78□□□□□ -0.68
Trim39-205ENSMUST00000173369 Chpf2Q3UU43 768 aa10.78□□□□□ -0.68
Trim39-205ENSMUST00000173369 Prkab2Q6PAM0 271 aa10.78□□□□□ -0.68
Trim39-205ENSMUST00000173369 Rab11fip3Q8CHD8 1047 aa10.78□□□□□ -0.68
Trim39-205ENSMUST00000173369 Nectin2P32507 530 aa10.78□□□□□ -0.68
Trim39-205ENSMUST00000173369 Ezh2Q61188 746 aaKnown RBP10.78□□□□□ -0.68
Trim39-205ENSMUST00000173369 Arfgef2A2A5R2 1792 aa10.77□□□□□ -0.68
Trim39-205ENSMUST00000173369 Hspa2P17156 633 aa10.77□□□□□ -0.69
Trim39-205ENSMUST00000173369 Ssfa2Q922B9 1252 aa10.77□□□□□ -0.69
Trim39-205ENSMUST00000173369 Crb1Q8VHS2 1405 aa10.77□□□□□ -0.69
Trim39-205ENSMUST00000173369 Vars2Q3U2A8 1060 aa10.77□□□□□ -0.69
Trim39-205ENSMUST00000173369 Msl1Q6PDM1 616 aa10.77□□□□□ -0.69
Trim39-205ENSMUST00000173369 Uhrf1bp1B2KF50 1429 aa10.76□□□□□ -0.69
Trim39-205ENSMUST00000173369 Tmco5bQ80X59 307 aa10.76□□□□□ -0.69
Trim39-205ENSMUST00000173369 Kat6bQ8BRB7 1872 aa10.76□□□□□ -0.69
Trim39-205ENSMUST00000173369 Jmjd4Q8BFT6 427 aa10.75□□□□□ -0.69
Trim39-205ENSMUST00000173369 Strn4P58404 760 aa10.75□□□□□ -0.69
Trim39-205ENSMUST00000173369 Afg3l2Q8JZQ2 802 aaKnown RBP10.75□□□□□ -0.69
Trim39-205ENSMUST00000173369 Gm13023A2A8N2 498 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Ralbp1Q62172 648 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Ccdc60Q8C4J0 545 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Znf330Q922H9 316 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Gnai1B2RSH2 354 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Igfbp6P47880 238 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Eif4a1P60843 406 aaKnown RBP10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Smarcc1P97496 1104 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Gnai3Q9DC51 354 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 AceP09470 1312 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Adam1aQ60813 791 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Kiaa0319lQ8K135 1048 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Nip7Q9CXK8 180 aaKnown RBP10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Rps6ka4Q9Z2B9 773 aa10.74□□□□□ -0.69
Trim39-205ENSMUST00000173369 Tnks1bp1P58871 1720 aa10.73□□□□□ -0.69
Trim39-205ENSMUST00000173369 Tlr8P58682 1032 aa10.73□□□□□ -0.69
Trim39-205ENSMUST00000173369 OscarQ8VBT3 265 aa10.73□□□□□ -0.69
Trim39-205ENSMUST00000173369 Adamtsl1Q8BLI0 1745 aa10.73□□□□□ -0.69
Trim39-205ENSMUST00000173369 Irx3P81067 507 aa10.73□□□□□ -0.69
Trim39-205ENSMUST00000173369 Zbtb1Q91VL9 713 aa10.73□□□□□ -0.69
Trim39-205ENSMUST00000173369 GckrQ91X44 587 aa10.73□□□□□ -0.69
Trim39-205ENSMUST00000173369 Hs6st3Q9QYK4 470 aa10.73□□□□□ -0.69
Trim39-205ENSMUST00000173369 Ankrd50F7BE84 1390 aa10.73□□□□□ -0.69
Trim39-205ENSMUST00000173369 Slurp2P0DP59 97 aa10.72□□□□□ -0.69
Trim39-205ENSMUST00000173369 Fam198bQ3UPI1 517 aa10.72□□□□□ -0.69
Trim39-205ENSMUST00000173369 Ttll7A4Q9F0 912 aa10.72□□□□□ -0.69
Trim39-205ENSMUST00000173369 Nutm1Q8BHP2 1126 aa10.72□□□□□ -0.69
Trim39-205ENSMUST00000173369 Fam83gQ5SWY7 812 aa10.71□□□□□ -0.69
Trim39-205ENSMUST00000173369 TefQ9JLC6 301 aa10.71□□□□□ -0.69
Trim39-205ENSMUST00000173369 PsdQ5DTT2 1024 aa10.71□□□□□ -0.7
Trim39-205ENSMUST00000173369 Ube2q2Q8K2Z8 378 aa10.71□□□□□ -0.7
Trim39-205ENSMUST00000173369 Pdia6Q922R8 440 aaKnown RBP10.71□□□□□ -0.7
Trim39-205ENSMUST00000173369 Riok3Q9DBU3 519 aaKnown RBP10.71□□□□□ -0.7
Trim39-205ENSMUST00000173369 Foxp4Q9DBY0 795 aaKnown RBP10.71□□□□□ -0.7
Trim39-205ENSMUST00000173369 Aifm3Q3TY86 605 aa10.7□□□□□ -0.7
Trim39-205ENSMUST00000173369 Akt1s1Q9D1F4 257 aa10.7□□□□□ -0.7
Trim39-205ENSMUST00000173369 Tktl2Q9D4D4 627 aa10.7□□□□□ -0.7
Trim39-205ENSMUST00000173369 Sumf1Q8R0F3 372 aa10.69□□□□□ -0.7
Trim39-205ENSMUST00000173369 Kdm2bQ6P1G2 1309 aa10.69□□□□□ -0.7
Trim39-205ENSMUST00000173369 Col1a2Q01149 1372 aa10.69□□□□□ -0.7
Trim39-205ENSMUST00000173369 Abcc12Q80WJ6 1366 aa10.69□□□□□ -0.7
Trim39-205ENSMUST00000173369 Col4a1P02463 1669 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 Upf2A2AT37 1269 aaKnown RBP10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 AampJ3QN89 436 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 CastP51125 788 aa10.68□□□□□ -0.7
Trim39-205ENSMUST00000173369 SympkQ80X82 1284 aa10.68□□□□□ -0.7
Retrieved 100 of 22,080 RNA–protein pairs in 94.6 ms