Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC53.96■■■■■ 6.23
SHROOM4Q9ULL8 MIR7108-201ENST00000614319 87 ntBASIC53.96■■■■■ 6.23
SHROOM4Q9ULL8 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC53.93■■■■■ 6.22
SHROOM4Q9ULL8 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC53.93■■■■■ 6.22
SHROOM4Q9ULL8 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC53.92■■■■■ 6.22
SHROOM4Q9ULL8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC53.92■■■■■ 6.22
SHROOM4Q9ULL8 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC53.92■■■■■ 6.22
SHROOM4Q9ULL8 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC53.91■■■■■ 6.22
SHROOM4Q9ULL8 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC53.88■■■■■ 6.22
SHROOM4Q9ULL8 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC53.87■■■■■ 6.21
SHROOM4Q9ULL8 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC53.87■■■■■ 6.21
SHROOM4Q9ULL8 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC53.85■■■■■ 6.21
SHROOM4Q9ULL8 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC53.85■■■■■ 6.21
SHROOM4Q9ULL8 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC53.84■■■■■ 6.21
SHROOM4Q9ULL8 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC53.83■■■■■ 6.21
SHROOM4Q9ULL8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC53.81■■■■■ 6.2
SHROOM4Q9ULL8 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC53.76■■■■■ 6.2
SHROOM4Q9ULL8 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC53.75■■■■■ 6.19
SHROOM4Q9ULL8 ABHD17AP4-201ENST00000411545 909 ntBASIC53.74■■■■■ 6.19
SHROOM4Q9ULL8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC53.73■■■■■ 6.19
SHROOM4Q9ULL8 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC53.73■■■■■ 6.19
SHROOM4Q9ULL8 AL133380.1-201ENST00000506013 324 ntBASIC53.68■■■■■ 6.18
SHROOM4Q9ULL8 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC53.67■■■■■ 6.18
SHROOM4Q9ULL8 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC53.65■■■■■ 6.18
SHROOM4Q9ULL8 MIR3665-201ENST00000578708 105 ntBASIC53.65■■■■■ 6.18
SHROOM4Q9ULL8 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC53.61■■■■■ 6.17
SHROOM4Q9ULL8 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC53.6■■■■■ 6.17
SHROOM4Q9ULL8 HLA-V-202ENST00000446817 847 ntBASIC53.58■■■■■ 6.17
SHROOM4Q9ULL8 MVK-208ENST00000539696 608 ntTSL 5 BASIC53.58■■■■■ 6.17
SHROOM4Q9ULL8 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC53.55■■■■■ 6.16
SHROOM4Q9ULL8 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC53.54■■■■■ 6.16
SHROOM4Q9ULL8 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC53.54■■■■■ 6.16
SHROOM4Q9ULL8 AC087741.3-201ENST00000624270 1347 ntBASIC53.53■■■■■ 6.16
SHROOM4Q9ULL8 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC53.53■■■■■ 6.16
SHROOM4Q9ULL8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC53.52■■■■■ 6.16
SHROOM4Q9ULL8 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC53.5■■■■■ 6.16
SHROOM4Q9ULL8 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC53.5■■■■■ 6.15
SHROOM4Q9ULL8 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC53.48■■■■■ 6.15
SHROOM4Q9ULL8 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC53.47■■■■■ 6.15
SHROOM4Q9ULL8 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC53.47■■■■■ 6.15
SHROOM4Q9ULL8 MBP-237ENST00000579129 1052 ntTSL 5 BASIC53.47■■■■■ 6.15
SHROOM4Q9ULL8 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC53.47■■■■■ 6.15
SHROOM4Q9ULL8 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC53.45■■■■■ 6.15
SHROOM4Q9ULL8 DUX4L28-201ENST00000623687 678 ntBASIC53.43■■■■■ 6.14
SHROOM4Q9ULL8 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC53.42■■■■■ 6.14
SHROOM4Q9ULL8 PVT1-219ENST00000523427 938 ntTSL 3 BASIC53.42■■■■■ 6.14
SHROOM4Q9ULL8 EBPL-202ENST00000378268 680 ntTSL 3 BASIC53.4■■■■■ 6.14
SHROOM4Q9ULL8 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC53.39■■■■■ 6.14
SHROOM4Q9ULL8 AC044849.2-201ENST00000606596 710 ntBASIC53.37■■■■■ 6.13
SHROOM4Q9ULL8 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC53.36■■■■■ 6.13
SHROOM4Q9ULL8 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC53.32■■■■■ 6.13
SHROOM4Q9ULL8 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC53.29■■■■■ 6.12
SHROOM4Q9ULL8 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC53.28■■■■■ 6.12
SHROOM4Q9ULL8 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC53.26■■■■■ 6.12
SHROOM4Q9ULL8 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC53.26■■■■■ 6.12
SHROOM4Q9ULL8 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC53.23■■■■■ 6.11
SHROOM4Q9ULL8 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC53.23■■■■■ 6.11
SHROOM4Q9ULL8 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC53.22■■■■■ 6.11
SHROOM4Q9ULL8 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC53.16■■■■■ 6.1
SHROOM4Q9ULL8 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC53.15■■■■■ 6.1
SHROOM4Q9ULL8 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC53.15■■■■■ 6.1
SHROOM4Q9ULL8 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC53.14■■■■■ 6.1
SHROOM4Q9ULL8 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC53.11■■■■■ 6.09
SHROOM4Q9ULL8 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC53.11■■■■■ 6.09
SHROOM4Q9ULL8 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC53.1■■■■■ 6.09
SHROOM4Q9ULL8 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC53.1■■■■■ 6.09
SHROOM4Q9ULL8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC53.09■■■■■ 6.09
SHROOM4Q9ULL8 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC53.09■■■■■ 6.09
SHROOM4Q9ULL8 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC53.09■■■■■ 6.09
SHROOM4Q9ULL8 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC53.09■■■■■ 6.09
SHROOM4Q9ULL8 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC53.06■■■■■ 6.08
SHROOM4Q9ULL8 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC53.05■■■■■ 6.08
SHROOM4Q9ULL8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC53.05■■■■■ 6.08
SHROOM4Q9ULL8 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC53.03■■■■■ 6.08
SHROOM4Q9ULL8 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC53.03■■■■■ 6.08
SHROOM4Q9ULL8 CHML-205ENST00000638160 705 ntTSL 3 BASIC52.99■■■■■ 6.07
SHROOM4Q9ULL8 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC52.97■■■■■ 6.07
SHROOM4Q9ULL8 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC52.95■■■■■ 6.07
SHROOM4Q9ULL8 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC52.94■■■■■ 6.06
SHROOM4Q9ULL8 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC52.93■■■■■ 6.06
SHROOM4Q9ULL8 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC52.93■■■■■ 6.06
SHROOM4Q9ULL8 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC52.93■■■■■ 6.06
SHROOM4Q9ULL8 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC52.92■■■■■ 6.06
SHROOM4Q9ULL8 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC52.9■■■■■ 6.06
SHROOM4Q9ULL8 MIR762-201ENST00000390236 83 ntBASIC52.88■■■■■ 6.06
SHROOM4Q9ULL8 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC52.88■■■■■ 6.06
SHROOM4Q9ULL8 AC005559.1-201ENST00000589661 871 ntBASIC52.88■■■■■ 6.06
SHROOM4Q9ULL8 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC52.88■■■■■ 6.06
SHROOM4Q9ULL8 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC52.87■■■■■ 6.05
SHROOM4Q9ULL8 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC52.86■■■■■ 6.05
SHROOM4Q9ULL8 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC52.86■■■■■ 6.05
SHROOM4Q9ULL8 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC52.84■■■■■ 6.05
SHROOM4Q9ULL8 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC52.83■■■■■ 6.05
SHROOM4Q9ULL8 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC52.83■■■■■ 6.05
SHROOM4Q9ULL8 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC52.82■■■■■ 6.05
SHROOM4Q9ULL8 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC52.79■■■■■ 6.04
SHROOM4Q9ULL8 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC52.75■■■■■ 6.04
SHROOM4Q9ULL8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC52.72■■■■■ 6.03
SHROOM4Q9ULL8 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC52.72■■■■■ 6.03
SHROOM4Q9ULL8 ZNRF2P2-203ENST00000454624 420 ntBASIC52.71■■■■■ 6.03
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms