Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC36.34■■■■□ 3.411e-323■■■■■ 39.9
XRN2Q9H0D6 SCARNA2-201ENST00000458748 420 ntBASIC20.77■□□□□ 0.921e-323■□□□□ 9
XRN2Q9H0D6 AL356488.2-201ENST00000602755 427 ntBASIC20.7■□□□□ 0.91e-323■□□□□ 9
XRN2Q9H0D6 SNHG22-202ENST00000615535 421 nt19.01■□□□□ 0.631e-323■■□□□ 11.5
XRN2Q9H0D6 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.57■□□□□ 0.561e-323■■□□□ 11.5
XRN2Q9H0D6 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.26■□□□□ 0.351e-323■■□□□ 14.3
XRN2Q9H0D6 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.32■□□□□ 0.21e-323■■■■■ 39.9
XRN2Q9H0D6 PHF10-204ENST00000480008 4285 ntTSL 1 (best)16.16■□□□□ 0.181e-323■■■■■ 39.9
XRN2Q9H0D6 RN7SL2-201ENST00000490232 300 ntBASIC15.21■□□□□ 0.031e-323■■■■□ 19.6
XRN2Q9H0D6 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.2■□□□□ 0.021e-323■■□□□ 14.3
XRN2Q9H0D6 RNU12-201ENST00000362512 150 ntBASIC13.63□□□□□ -0.231e-323■□□□□ 11.2
XRN2Q9H0D6 C22orf24-202ENST00000486651 823 ntTSL 1 (best)13.27□□□□□ -0.291e-323■■■■■ 48.7
XRN2Q9H0D6 Z93241.1-201ENST00000602478 664 ntBASIC12.6□□□□□ -0.391e-323■□□□□ 11.2
XRN2Q9H0D6 AL627171.2-201ENST00000635177 1090 ntTSL 5 BASIC11.7□□□□□ -0.541e-323■■■■□ 19.6
XRN2Q9H0D6 AL627171.2-202ENST00000634923 923 ntTSL 5 BASIC11.48□□□□□ -0.571e-323■■■■□ 19.6
XRN2Q9H0D6 C22orf24-203ENST00000623735 1247 ntTSL 1 (best) BASIC9.95□□□□□ -0.821e-323■■■■■ 48.7
XRN2Q9H0D6 RN7SKP160-201ENST00000363804 340 ntBASIC7.03□□□□□ -1.281e-323■□□□□ 10.5
XRN2Q9H0D6 RNU6-9-201ENST00000384776 107 ntBASIC3.04□□□□□ -1.921e-323■■■■■ 100.4
XRN2Q9H0D6 SCARNA17-201ENST00000516183 144 ntBASIC-0.47□□□□□ -2.481e-323■■□□□ 14.3
XRN2Q9H0D6 SMC4-221ENST00000489573 1553 ntTSL 1 (best)23.57■■□□□ 1.361e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-209ENST00000468653 1756 ntTSL 220.32■□□□□ 0.841e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-211ENST00000469858 1971 ntTSL 219.31■□□□□ 0.681e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.421e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.46■□□□□ 0.071e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.361e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-213ENST00000472282 667 ntTSL 310.88□□□□□ -0.671e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-214ENST00000472991 582 ntTSL 510.41□□□□□ -0.741e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC9.92□□□□□ -0.821e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-212ENST00000470240 724 ntTSL 38.08□□□□□ -1.121e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-219ENST00000487747 637 ntTSL 54.49□□□□□ -1.691e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-208ENST00000467468 566 ntTSL 44.37□□□□□ -1.711e-147■■■■■ 345.5
XRN2Q9H0D6 SMC4-227ENST00000497984 563 ntTSL 54.07□□□□□ -1.761e-147■■■■■ 345.5
XRN2Q9H0D6 MIR15B-201ENST00000385045 98 ntBASIC1.53□□□□□ -2.161e-147■■■■■ 345.5
XRN2Q9H0D6 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.432e-130■■■■■ 717.4
XRN2Q9H0D6 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.717e-89■■■■■ 490.3
XRN2Q9H0D6 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC7.52□□□□□ -1.216e-81■■□□□ 13
XRN2Q9H0D6 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.142e-70■■■■■ 389.3
XRN2Q9H0D6 HOXD11-202ENST00000498438 1259 ntTSL 1 (best)21.82■■□□□ 1.082e-70■■■■■ 389.3
XRN2Q9H0D6 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC25.34■■□□□ 1.656e-56■■■■■ 41.2
XRN2Q9H0D6 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.626e-56■■■■■ 41.2
XRN2Q9H0D6 FUT11-203ENST00000465695 2408 ntTSL 217■□□□□ 0.316e-56■■■■■ 41.2
XRN2Q9H0D6 AC245014.3-201ENST00000618589 347 ntBASIC7.21□□□□□ -1.262e-54■■■■■ 40.2
XRN2Q9H0D6 RNVU1-14-201ENST00000384770 164 ntBASIC4.52□□□□□ -1.692e-54■■■■■ 40.2
XRN2Q9H0D6 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.52■■■□□ 2.649e-47■■□□□ 13.5
XRN2Q9H0D6 ATXN2L-213ENST00000564162 770 ntTSL 521.47■■□□□ 1.036e-46■■■□□ 16.6
XRN2Q9H0D6 ATXN2L-222ENST00000567024 525 ntTSL 320.44■□□□□ 0.866e-46■□□□□ 8.5
XRN2Q9H0D6 REEP4-203ENST00000518664 996 ntTSL 223.14■■□□□ 1.292e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-206ENST00000521744 635 ntTSL 320.74■□□□□ 0.912e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-204ENST00000519074 1212 ntTSL 220.71■□□□□ 0.912e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.62■□□□□ 0.892e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.812e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-205ENST00000519875 732 ntTSL 320.04■□□□□ 0.82e-45■■■■■ 252.3
XRN2Q9H0D6 REEP4-207ENST00000523293 913 ntTSL 3 BASIC19.01■□□□□ 0.632e-45■■■■■ 252.3
XRN2Q9H0D6 SNORD88B-201ENST00000408454 91 ntBASIC15.4■□□□□ 0.064e-45■■■■□ 21.6
XRN2Q9H0D6 MLXIPL-209ENST00000467221 774 ntTSL 512.57□□□□□ -0.41e-44■■□□□ 12.3
XRN2Q9H0D6 SNORD3C-201ENST00000580533 581 ntBASIC13.22□□□□□ -0.293e-43■■■□□ 16.3
XRN2Q9H0D6 SNORD3C-203ENST00000625845 217 nt12.62□□□□□ -0.393e-43■■■□□ 16.3
XRN2Q9H0D6 SNORD3C-202ENST00000620446 218 nt12.31□□□□□ -0.443e-43■■■□□ 16.3
XRN2Q9H0D6 RAP1B-215ENST00000535492 509 ntTSL 428.93■■■□□ 2.228e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-233ENST00000545720 552 ntTSL 528.93■■■□□ 2.228e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-218ENST00000538877 550 ntTSL 428.93■■■□□ 2.228e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-217ENST00000538283 591 ntTSL 425.67■■□□□ 1.78e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.23■■□□□ 1.638e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC24.95■■□□□ 1.588e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-213ENST00000501412 1488 ntTSL 224.66■■□□□ 1.548e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.88■■□□□ 1.418e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-209ENST00000460800 755 ntTSL 323.88■■□□□ 1.418e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-214ENST00000534899 606 ntTSL 423.88■■□□□ 1.418e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-222ENST00000540781 571 ntTSL 423.59■■□□□ 1.378e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-206ENST00000425247 855 ntTSL 523.59■■□□□ 1.378e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-227ENST00000542018 633 ntTSL 423.46■■□□□ 1.358e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-223ENST00000541167 561 ntTSL 423.4■■□□□ 1.348e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-219ENST00000538980 587 ntTSL 323.4■■□□□ 1.348e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-212ENST00000489473 561 ntTSL 423.4■■□□□ 1.348e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC23.1■■□□□ 1.298e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-208ENST00000453560 530 ntTSL 423.1■■□□□ 1.298e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-205ENST00000422358 468 ntTSL 423.1■■□□□ 1.298e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC23.1■■□□□ 1.298e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC22.84■■□□□ 1.258e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC22.37■■□□□ 1.178e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-225ENST00000541386 480 ntTSL 422.37■■□□□ 1.178e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-232ENST00000545270 640 ntTSL 322.37■■□□□ 1.178e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.048e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-210ENST00000463493 781 ntTSL 420.79■□□□□ 0.928e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-211ENST00000485252 312 ntTSL 520.72■□□□□ 0.918e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.198e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-230ENST00000543697 734 ntTSL 3 BASIC8.6□□□□□ -1.038e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.638e-42■■■■■ 28.4
XRN2Q9H0D6 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.71□□□□□ -1.668e-42■■■■■ 28.4
XRN2Q9H0D6 C9orf3-222ENST00000496567 1575 ntTSL 524.57■■□□□ 1.526e-41■■■■■ 57.7
XRN2Q9H0D6 SOX2-OT-241ENST00000626948 836 ntTSL 516.41■□□□□ 0.225e-40■■□□□ 11.6
XRN2Q9H0D6 SOX2-OT-256ENST00000630482 1012 ntTSL 514.77□□□□□ -0.055e-40■■□□□ 11.6
XRN2Q9H0D6 SOX2-OT-201ENST00000460739 609 ntTSL 4 BASIC14.19□□□□□ -0.145e-40■■□□□ 11.6
XRN2Q9H0D6 SOX2-OT-215ENST00000493521 1239 ntTSL 3 BASIC12.36□□□□□ -0.435e-40■■□□□ 11.6
XRN2Q9H0D6 SOX2-OT-226ENST00000597347 1342 ntTSL 511.47□□□□□ -0.575e-40■■□□□ 11.6
XRN2Q9H0D6 SOX2-OT-214ENST00000493116 560 ntTSL 45.48□□□□□ -1.535e-40■■□□□ 11.6
XRN2Q9H0D6 SOX2-OT-204ENST00000469278 561 ntTSL 43.48□□□□□ -1.855e-40■■□□□ 11.6
XRN2Q9H0D6 RNU6-4P-201ENST00000384205 107 ntBASIC3.04□□□□□ -1.925e-40■■□□□ 11.6
XRN2Q9H0D6 LENG8-203ENST00000421200 594 ntTSL 317.91■□□□□ 0.462e-39■□□□□ 10
XRN2Q9H0D6 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.56■■■□□ 2.482e-38■□□□□ 10.5
Retrieved 100 of 21,068 protein–RNA pairs in 65.9 ms