Protein–RNA interactions for Protein: Q99J62

Rfc4, Replication factor C subunit 4, mousemouse

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfc4Q99J62 Gm25239-201ENSMUST00000174915 86 ntBASIC45.68■■■■■ 4.9
Rfc4Q99J62 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC42.38■■■■■ 4.37
Rfc4Q99J62 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC41.81■■■■■ 4.28
Rfc4Q99J62 Gm24109-201ENSMUST00000175489 103 ntBASIC39.72■■■■□ 3.95
Rfc4Q99J62 Gm15042-201ENSMUST00000120212 883 ntBASIC39.62■■■■□ 3.93
Rfc4Q99J62 Gm15045-201ENSMUST00000117359 883 ntBASIC38.65■■■■□ 3.78
Rfc4Q99J62 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
Rfc4Q99J62 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC38.58■■■■□ 3.77
Rfc4Q99J62 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC38.55■■■■□ 3.76
Rfc4Q99J62 Gm23366-201ENSMUST00000175022 89 ntBASIC38.14■■■■□ 3.7
Rfc4Q99J62 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37.93■■■■□ 3.66
Rfc4Q99J62 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37.77■■■■□ 3.64
Rfc4Q99J62 AC153911.1-202ENSMUST00000218534 1034 ntBASIC37.17■■■■□ 3.54
Rfc4Q99J62 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
Rfc4Q99J62 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
Rfc4Q99J62 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC36.83■■■■□ 3.49
Rfc4Q99J62 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC36.83■■■■□ 3.49
Rfc4Q99J62 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
Rfc4Q99J62 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36.67■■■■□ 3.46
Rfc4Q99J62 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC36.45■■■■□ 3.43
Rfc4Q99J62 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.43■■■■□ 3.42
Rfc4Q99J62 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC36.32■■■■□ 3.4
Rfc4Q99J62 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
Rfc4Q99J62 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC36.22■■■■□ 3.39
Rfc4Q99J62 Gm25238-201ENSMUST00000174914 89 ntBASIC36.15■■■■□ 3.38
Rfc4Q99J62 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36.14■■■■□ 3.38
Rfc4Q99J62 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC35.9■■■■□ 3.34
Rfc4Q99J62 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC35.86■■■■□ 3.33
Rfc4Q99J62 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
Rfc4Q99J62 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
Rfc4Q99J62 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35.51■■■■□ 3.28
Rfc4Q99J62 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC35.46■■■■□ 3.27
Rfc4Q99J62 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35.45■■■■□ 3.27
Rfc4Q99J62 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
Rfc4Q99J62 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35.22■■■■□ 3.23
Rfc4Q99J62 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC35.11■■■■□ 3.21
Rfc4Q99J62 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC35.08■■■■□ 3.21
Rfc4Q99J62 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC35.01■■■■□ 3.2
Rfc4Q99J62 Psd-208ENSMUST00000224556 2034 ntBASIC35■■■■□ 3.19
Rfc4Q99J62 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
Rfc4Q99J62 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34.99■■■■□ 3.19
Rfc4Q99J62 Gm25262-201ENSMUST00000174934 133 ntBASIC34.84■■■■□ 3.17
Rfc4Q99J62 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.77■■■■□ 3.16
Rfc4Q99J62 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34.72■■■■□ 3.15
Rfc4Q99J62 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.67■■■■□ 3.14
Rfc4Q99J62 Gm27325-201ENSMUST00000175467 74 ntBASIC34.66■■■■□ 3.14
Rfc4Q99J62 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34.45■■■■□ 3.11
Rfc4Q99J62 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
Rfc4Q99J62 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
Rfc4Q99J62 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC34.31■■■■□ 3.08
Rfc4Q99J62 Rab21-202ENSMUST00000218831 843 ntBASIC34.25■■■■□ 3.07
Rfc4Q99J62 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC34.2■■■■□ 3.07
Rfc4Q99J62 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC34.2■■■■□ 3.07
Rfc4Q99J62 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
Rfc4Q99J62 Gm26115-201ENSMUST00000175605 87 ntBASIC34.1■■■■□ 3.05
Rfc4Q99J62 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC34.08■■■■□ 3.05
Rfc4Q99J62 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC34.03■■■■□ 3.04
Rfc4Q99J62 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.99■■■■□ 3.03
Rfc4Q99J62 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC33.96■■■■□ 3.03
Rfc4Q99J62 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC33.9■■■■□ 3.02
Rfc4Q99J62 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC33.88■■■■□ 3.01
Rfc4Q99J62 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
Rfc4Q99J62 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33.84■■■■□ 3.01
Rfc4Q99J62 Gm8109-201ENSMUST00000194076 746 ntBASIC33.84■■■■□ 3.01
Rfc4Q99J62 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC33.82■■■■□ 3
Rfc4Q99J62 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33.79■■■■□ 3
Rfc4Q99J62 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33.73■■■□□ 2.99
Rfc4Q99J62 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
Rfc4Q99J62 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
Rfc4Q99J62 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Rfc4Q99J62 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Rfc4Q99J62 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC33.57■■■□□ 2.96
Rfc4Q99J62 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33.54■■■□□ 2.96
Rfc4Q99J62 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33.53■■■□□ 2.96
Rfc4Q99J62 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC33.52■■■□□ 2.96
Rfc4Q99J62 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
Rfc4Q99J62 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33.41■■■□□ 2.94
Rfc4Q99J62 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
Rfc4Q99J62 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.35■■■□□ 2.93
Rfc4Q99J62 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33.32■■■□□ 2.92
Rfc4Q99J62 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC33.29■■■□□ 2.92
Rfc4Q99J62 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
Rfc4Q99J62 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Rfc4Q99J62 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
Rfc4Q99J62 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC33.1■■■□□ 2.89
Rfc4Q99J62 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33.07■■■□□ 2.88
Rfc4Q99J62 Gm17082-201ENSMUST00000166043 1091 ntBASIC33.06■■■□□ 2.88
Rfc4Q99J62 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33.06■■■□□ 2.88
Rfc4Q99J62 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC33.03■■■□□ 2.88
Rfc4Q99J62 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC33.03■■■□□ 2.88
Rfc4Q99J62 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
Rfc4Q99J62 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
Rfc4Q99J62 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
Rfc4Q99J62 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC32.93■■■□□ 2.86
Rfc4Q99J62 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC32.91■■■□□ 2.86
Rfc4Q99J62 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
Rfc4Q99J62 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC32.9■■■□□ 2.86
Rfc4Q99J62 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
Rfc4Q99J62 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC32.84■■■□□ 2.85
Rfc4Q99J62 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC32.83■■■□□ 2.85
Retrieved 100 of 76,532 protein–RNA pairs in 89 ms