Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 AKT2-208ENST00000416994 904 ntTSL 426.85■■□□□ 1.898e-6■□□□□ 8.3
UPF1Q92900 TAF15-206ENST00000603967 656 ntTSL 325.06■■□□□ 1.68e-6■□□□□ 8.3
UPF1Q92900 TAF15-210ENST00000604694 891 ntTSL 525.06■■□□□ 1.68e-6■□□□□ 8.3
UPF1Q92900 AKT2-240ENST00000584288 1706 ntTSL 224.39■■□□□ 1.58e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.268e-6■□□□□ 8.3
UPF1Q92900 AKT2-228ENST00000537834 1402 ntTSL 222.74■■□□□ 1.238e-6■□□□□ 8.3
UPF1Q92900 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.168e-6■□□□□ 8.3
UPF1Q92900 AKT2-212ENST00000441941 974 ntTSL 421.59■■□□□ 1.058e-6■□□□□ 8.3
UPF1Q92900 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.4■■□□□ 1.028e-6■□□□□ 8.3
UPF1Q92900 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.978e-6■□□□□ 8.3
UPF1Q92900 AKT2-207ENST00000416362 974 ntTSL 520.94■□□□□ 0.948e-6■□□□□ 8.3
UPF1Q92900 AKT2-211ENST00000427375 554 ntTSL 420.94■□□□□ 0.948e-6■□□□□ 8.3
UPF1Q92900 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.928e-6■□□□□ 8.3
UPF1Q92900 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.868e-6■□□□□ 8.3
UPF1Q92900 AKT2-205ENST00000392037 681 ntTSL 220.12■□□□□ 0.818e-6■□□□□ 8.3
UPF1Q92900 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.678e-6■□□□□ 8.3
UPF1Q92900 AKT2-213ENST00000452077 577 ntTSL 317.71■□□□□ 0.438e-6■□□□□ 8.3
UPF1Q92900 AKT2-229ENST00000578123 564 ntTSL 416.44■□□□□ 0.228e-6■□□□□ 8.3
UPF1Q92900 AKT2-241ENST00000596634 583 ntTSL 516.23■□□□□ 0.198e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.158e-6■□□□□ 8.3
UPF1Q92900 AKT2-224ENST00000492463 737 ntTSL 515.62■□□□□ 0.098e-6■□□□□ 8.3
UPF1Q92900 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.048e-6■□□□□ 8.3
UPF1Q92900 AKT2-201ENST00000311278 1393 ntTSL 1 (best) BASIC14.83□□□□□ -0.048e-6■□□□□ 8.3
UPF1Q92900 AKT2-202ENST00000358335 546 ntTSL 414.73□□□□□ -0.058e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-208ENST00000456458 1742 ntTSL 1 (best)14.69□□□□□ -0.068e-6■□□□□ 8.3
UPF1Q92900 AKT2-219ENST00000486368 606 ntTSL 414.27□□□□□ -0.138e-6■□□□□ 8.3
UPF1Q92900 AKT2-209ENST00000423127 798 ntTSL 514.03□□□□□ -0.168e-6■□□□□ 8.3
UPF1Q92900 AKT2-236ENST00000580747 525 ntTSL 413.55□□□□□ -0.248e-6■□□□□ 8.3
UPF1Q92900 CTPS1-202ENST00000372621 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.418e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-214ENST00000620705 1704 ntTSL 1 (best) BASIC12.25□□□□□ -0.458e-6■□□□□ 8.3
UPF1Q92900 STARD7-203ENST00000462501 753 ntTSL 212.05□□□□□ -0.488e-6■□□□□ 8.3
UPF1Q92900 PDLIM5-207ENST00000503974 2081 ntTSL 2 BASIC11.7□□□□□ -0.542e-10■□□□□ 8.3
UPF1Q92900 PDLIM5-206ENST00000437932 5713 ntTSL 5 BASIC11.48□□□□□ -0.572e-10■□□□□ 8.3
UPF1Q92900 SCAF11-210ENST00000547654 416 ntTSL 211.27□□□□□ -0.618e-6■□□□□ 8.3
UPF1Q92900 SCAF11-213ENST00000550629 579 ntTSL 211.27□□□□□ -0.618e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.728e-6■□□□□ 8.3
UPF1Q92900 SCAF11-202ENST00000369367 7543 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.798e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC9.99□□□□□ -0.818e-6■□□□□ 8.3
UPF1Q92900 PDLIM5-201ENST00000317968 6083 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.892e-10■□□□□ 8.3
UPF1Q92900 PDLIM5-222ENST00000615540 6219 ntTSL 1 (best) BASIC9.03□□□□□ -0.962e-10■□□□□ 8.3
UPF1Q92900 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.022e-86■□□□□ 8.3
UPF1Q92900 STARD7-205ENST00000488084 384 ntTSL 28.35□□□□□ -1.078e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC8.17□□□□□ -1.18e-6■□□□□ 8.3
UPF1Q92900 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.328e-6■□□□□ 8.3
UPF1Q92900 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC13.29□□□□□ -0.282e-12■□□□□ 8.3
UPF1Q92900 INPPL1-202ENST00000320683 717 ntTSL 235.55■■■■□ 3.281e-8■□□□□ 8.3
UPF1Q92900 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.651e-7■□□□□ 8.3
UPF1Q92900 TPM4-214ENST00000591645 653 ntTSL 310.21□□□□□ -0.771e-7■□□□□ 8.3
UPF1Q92900 SARS-202ENST00000369923 1882 ntTSL 5 BASIC17.86■□□□□ 0.456e-6■□□□□ 8.2
UPF1Q92900 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.176e-6■□□□□ 8.2
UPF1Q92900 SARS-205ENST00000477544 694 ntTSL 214.64□□□□□ -0.076e-6■□□□□ 8.2
UPF1Q92900 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC33.82■■■■□ 37e-12■□□□□ 8.2
UPF1Q92900 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC33.82■■■■□ 37e-12■□□□□ 8.2
UPF1Q92900 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC33.82■■■■□ 37e-12■□□□□ 8.2
UPF1Q92900 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC31.13■■■□□ 2.577e-12■□□□□ 8.2
UPF1Q92900 INPPL1-212ENST00000541752 856 ntTSL 221.35■■□□□ 1.014e-9■□□□□ 8.2
UPF1Q92900 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.714e-9■□□□□ 8.2
UPF1Q92900 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.27■□□□□ 0.354e-9■□□□□ 8.2
UPF1Q92900 CLINT1-205ENST00000522381 721 ntTSL 514.55□□□□□ -0.084e-9■□□□□ 8.2
UPF1Q92900 CLINT1-201ENST00000411809 3440 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.264e-9■□□□□ 8.2
UPF1Q92900 CLINT1-210ENST00000530742 3344 ntTSL 5 BASIC12.89□□□□□ -0.354e-9■□□□□ 8.2
UPF1Q92900 CLINT1-206ENST00000523094 3987 ntTSL 2 BASIC12.85□□□□□ -0.354e-9■□□□□ 8.2
UPF1Q92900 CLINT1-203ENST00000521047 733 ntTSL 211.27□□□□□ -0.614e-9■□□□□ 8.2
UPF1Q92900 CLINT1-202ENST00000518855 3394 ntTSL 26.49□□□□□ -1.374e-9■□□□□ 8.2
UPF1Q92900 CLINT1-208ENST00000524306 2905 ntTSL 1 (best)5.86□□□□□ -1.474e-9■□□□□ 8.2
UPF1Q92900 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.634e-9■□□□□ 8.2
UPF1Q92900 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.5□□□□□ -2.014e-9■□□□□ 8.2
UPF1Q92900 SRSF1-206ENST00000583741 1465 ntTSL 531.03■■■□□ 2.561e-28■□□□□ 8.2
UPF1Q92900 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC25.87■■□□□ 1.731e-28■□□□□ 8.2
UPF1Q92900 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC25.55■■□□□ 1.681e-28■□□□□ 8.2
UPF1Q92900 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.291e-28■□□□□ 8.2
UPF1Q92900 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC34.23■■■■□ 3.071e-6■□□□□ 8.2
UPF1Q92900 JUND-202ENST00000600972 500 ntTSL 232.79■■■□□ 2.841e-6■□□□□ 8.2
UPF1Q92900 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC26.51■■□□□ 1.831e-6■□□□□ 8.2
UPF1Q92900 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC22.12■■□□□ 1.131e-6■□□□□ 8.2
UPF1Q92900 GORASP2-207ENST00000486498 2096 ntTSL 217.08■□□□□ 0.321e-6■□□□□ 8.2
UPF1Q92900 GORASP2-202ENST00000442798 1976 ntTSL 217.02■□□□□ 0.321e-6■□□□□ 8.2
UPF1Q92900 HACD3-207ENST00000566074 1658 ntTSL 5 BASIC15.93■□□□□ 0.141e-6■□□□□ 8.2
UPF1Q92900 HACD3-210ENST00000568793 1824 ntTSL 5 BASIC15.93■□□□□ 0.141e-6■□□□□ 8.2
UPF1Q92900 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.021e-6■□□□□ 8.2
UPF1Q92900 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC11.8□□□□□ -0.521e-6■□□□□ 8.2
UPF1Q92900 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC8.7□□□□□ -1.021e-6■□□□□ 8.2
UPF1Q92900 FPGS-208ENST00000467826 829 ntTSL 529.54■■■□□ 2.324e-6■□□□□ 8.2
UPF1Q92900 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.77■■□□□ 1.884e-6■□□□□ 8.2
UPF1Q92900 UGDH-211ENST00000515021 861 ntTSL 526.37■■□□□ 1.814e-6■□□□□ 8.2
UPF1Q92900 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.05■■□□□ 1.64e-6■□□□□ 8.2
UPF1Q92900 UGDH-203ENST00000503779 575 ntTSL 424.1■■□□□ 1.454e-6■□□□□ 8.2
UPF1Q92900 UGDH-207ENST00000509391 577 ntTSL 324.1■■□□□ 1.454e-6■□□□□ 8.2
UPF1Q92900 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.354e-6■□□□□ 8.2
UPF1Q92900 UGDH-210ENST00000514106 568 ntTSL 422.19■■□□□ 1.144e-6■□□□□ 8.2
UPF1Q92900 UGDH-212ENST00000515398 584 ntTSL 522.19■■□□□ 1.144e-6■□□□□ 8.2
UPF1Q92900 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 14e-6■□□□□ 8.2
UPF1Q92900 FPGS-207ENST00000460181 2206 ntTSL 1 (best)21.19■□□□□ 0.984e-6■□□□□ 8.2
UPF1Q92900 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.88■□□□□ 0.934e-6■□□□□ 8.2
UPF1Q92900 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.144e-6■□□□□ 8.2
UPF1Q92900 PHF7-210ENST00000614886 1421 ntTSL 1 (best) BASIC15.39■□□□□ 0.054e-6■□□□□ 8.2
UPF1Q92900 PHF7-202ENST00000347025 1472 ntTSL 5 BASIC13.93□□□□□ -0.184e-6■□□□□ 8.2
UPF1Q92900 UGDH-209ENST00000510881 549 ntTSL 310.03□□□□□ -0.84e-6■□□□□ 8.2
UPF1Q92900 PHF7-204ENST00000461861 1303 ntTSL 59.79□□□□□ -0.844e-6■□□□□ 8.2
UPF1Q92900 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC9.67□□□□□ -0.864e-6■□□□□ 8.2
Retrieved 100 of 15,879 protein–RNA pairs in 181.4 ms