Protein–RNA interactions for Protein: P05455

SSB, Lupus La protein, humanhuman

Known RBP eCLIP

Length 408 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP05455 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.992e-6■■□□□ 12.9
SSBP05455 OAZ1-210ENST00000593012 1357 ntTSL 220.42■□□□□ 0.862e-6■■□□□ 12.9
SSBP05455 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.772e-6■■□□□ 12.9
SSBP05455 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.622e-6■■□□□ 12.9
SSBP05455 OAZ1-201ENST00000581150 1131 ntTSL 518.66■□□□□ 0.582e-6■■□□□ 12.9
SSBP05455 OAZ1-209ENST00000592787 857 ntTSL 218.03■□□□□ 0.482e-6■■□□□ 12.9
SSBP05455 OAZ1-207ENST00000590943 1012 ntTSL 217.9■□□□□ 0.462e-6■■□□□ 12.9
SSBP05455 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.132e-6■■□□□ 12.9
SSBP05455 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -12e-6■■□□□ 12.9
SSBP05455 NOP58-203ENST00000433543 714 ntTSL 37.47□□□□□ -1.212e-6■■□□□ 12.9
SSBP05455 SNORD11B-201ENST00000607707 90 ntBASIC3.51□□□□□ -1.852e-6■■□□□ 12.9
SSBP05455 SNORD111-201ENST00000408139 94 ntBASIC1.63□□□□□ -2.152e-6■■□□□ 12.9
SSBP05455 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.162e-6■■■■□ 19.4
SSBP05455 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.852e-6■■■■□ 19.4
SSBP05455 MAP2K3-206ENST00000479129 574 ntTSL 319.74■□□□□ 0.752e-6■■■■□ 19.4
SSBP05455 MAP2K3-207ENST00000483928 511 ntTSL 519.62■□□□□ 0.732e-6■■■■□ 19.4
SSBP05455 MAP2K3-213ENST00000583508 607 ntTSL 519.62■□□□□ 0.732e-6■■■■□ 19.4
SSBP05455 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.382e-6■■■■□ 19.4
SSBP05455 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC15.99■□□□□ 0.152e-6■■■■□ 19.4
SSBP05455 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC15.62■□□□□ 0.092e-6■■■■□ 19.4
SSBP05455 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC15.09■□□□□ 0.012e-6■■■■□ 19.4
SSBP05455 MAP2K3-208ENST00000496046 2089 ntTSL 514.06□□□□□ -0.162e-6■■■■□ 19.4
SSBP05455 MAP2K3-204ENST00000395491 2401 ntTSL 213.95□□□□□ -0.182e-6■■■■□ 19.4
SSBP05455 MAP2K3-209ENST00000526076 575 ntTSL 410.89□□□□□ -0.672e-6■■■■□ 19.4
SSBP05455 UQCRC1-202ENST00000412343 778 ntTSL 323.76■■□□□ 1.392e-6■■■□□ 15
SSBP05455 UQCRC1-206ENST00000467690 931 ntTSL 222.2■■□□□ 1.142e-6■■■□□ 15
SSBP05455 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.762e-6■■■□□ 15
SSBP05455 UQCRC1-203ENST00000415995 1387 ntTSL 517.89■□□□□ 0.452e-6■■■□□ 15
SSBP05455 UQCRC1-205ENST00000463708 739 ntTSL 314.52□□□□□ -0.092e-6■■■□□ 15
SSBP05455 HSPG2-210ENST00000481644 839 ntTSL 220.69■□□□□ 0.94e-6■■■■□ 24.3
SSBP05455 HSPG2-211ENST00000486901 3586 ntTSL 213.84□□□□□ -0.194e-6■■■■□ 24.3
SSBP05455 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.864e-6■■■■□ 24.3
SSBP05455 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.63■■□□□ 1.054e-6■□□□□ 10.9
SSBP05455 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.46■□□□□ 0.554e-6■□□□□ 10.9
SSBP05455 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.534e-6■□□□□ 10.9
SSBP05455 PMF1-206ENST00000606952 1275 ntTSL 1 (best)18.34■□□□□ 0.534e-6■□□□□ 10.9
SSBP05455 SOS1-204ENST00000451331 579 ntTSL 418.13■□□□□ 0.494e-6■□□□□ 10.9
SSBP05455 PMF1-205ENST00000497069 837 ntTSL 317.65■□□□□ 0.424e-6■□□□□ 10.9
SSBP05455 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.014e-6■□□□□ 10.9
SSBP05455 PMF1-201ENST00000368273 884 ntTSL 2 BASIC14.64□□□□□ -0.074e-6■□□□□ 10.9
SSBP05455 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC14.18□□□□□ -0.144e-6■□□□□ 10.9
SSBP05455 PMF1-BGLAP-201ENST00000320139 773 ntTSL 1 (best) BASIC13.51□□□□□ -0.254e-6■□□□□ 10.9
SSBP05455 PMF1-204ENST00000466489 933 ntTSL 1 (best)10.98□□□□□ -0.654e-6■□□□□ 10.9
SSBP05455 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.92□□□□□ -1.34e-6■□□□□ 10.9
SSBP05455 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.07□□□□□ -1.64e-6■□□□□ 10.9
SSBP05455 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.634e-6■□□□□ 10.9
SSBP05455 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.364e-6■■■■□ 20.7
SSBP05455 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC16.08■□□□□ 0.174e-6■■■■□ 20.7
SSBP05455 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.03■□□□□ 0.164e-6■■■■□ 20.7
SSBP05455 MED15-211ENST00000433831 3267 ntTSL 515.93■□□□□ 0.144e-6■■■■□ 20.7
SSBP05455 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.054e-6■■■■□ 20.7
SSBP05455 MED15-226ENST00000478831 707 ntTSL 412.63□□□□□ -0.394e-6■■■■□ 20.7
SSBP05455 MED15-230ENST00000492381 3619 ntTSL 212.07□□□□□ -0.484e-6■■■■□ 20.7
SSBP05455 AC051619.8-201ENST00000563103 308 ntBASIC12.45□□□□□ -0.424e-6■■□□□ 12
SSBP05455 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC7.82□□□□□ -1.164e-6■■■■□ 21.1
SSBP05455 AL024507.2-201ENST00000606070 2574 ntBASIC23.45■■□□□ 1.345e-6■■■■□ 20.9
SSBP05455 AC093249.2-201ENST00000563540 482 ntTSL 3 BASIC12.18□□□□□ -0.466e-6■■■□□ 18.1
SSBP05455 POLR1A-203ENST00000409681 6454 ntTSL 5 BASIC11.76□□□□□ -0.537e-6■■■□□ 18.1
SSBP05455 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.177e-6■■■□□ 18.1
SSBP05455 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.58□□□□□ -1.527e-6■■■■□ 19.9
SSBP05455 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.348e-6■■□□□ 11.6
SSBP05455 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.348e-6■■□□□ 11.6
SSBP05455 AL136295.1-201ENST00000530611 2740 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.439e-6■■■□□ 17.6
SSBP05455 MIR3648-1-201ENST00000615959 180 ntBASIC28.37■■■□□ 2.131e-5■■■□□ 18.1
SSBP05455 SORL1-201ENST00000260197 10904 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.241e-5■□□□□ 10.2
SSBP05455 SORL1-206ENST00000527934 3032 ntTSL 2 BASIC12.31□□□□□ -0.441e-5■□□□□ 10.2
SSBP05455 SORL1-211ENST00000532694 3692 ntTSL 2 BASIC10.12□□□□□ -0.791e-5■□□□□ 10.2
SSBP05455 SORL1-204ENST00000525532 3836 ntTSL 2 BASIC9.78□□□□□ -0.841e-5■□□□□ 10.2
SSBP05455 SORL1-213ENST00000534754 2222 ntTSL 39.71□□□□□ -0.861e-5■□□□□ 10.2
SSBP05455 SORL1-212ENST00000534286 3501 ntTSL 2 BASIC9.23□□□□□ -0.931e-5■□□□□ 10.2
SSBP05455 SORL1-202ENST00000524633 1338 ntTSL 59.05□□□□□ -0.961e-5■□□□□ 10.2
SSBP05455 SORL1-207ENST00000528339 3703 ntTSL 28.47□□□□□ -1.051e-5■□□□□ 10.2
Retrieved 72 of 672 protein–RNA pairs in 56.3 ms