Protein–RNA interactions for Protein: P05455

SSB, Lupus La protein, humanhuman

Known RBP eCLIP

Length 408 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP05455 SEC14L1-201ENST00000392476 2957 ntAPPRIS ALT1 TSL 2 BASIC11.92□□□□□ -0.57e-20■■■■■ 28.2
SSBP05455 SCARNA16-201ENST00000515981 187 ntBASIC10.84□□□□□ -0.677e-20■■■■■ 28.2
SSBP05455 SEC14L1-208ENST00000564414 528 ntTSL 1 (best)6.57□□□□□ -1.367e-20■■■■■ 28.2
SSBP05455 SEC14L1-210ENST00000568056 424 ntTSL 1 (best)5.78□□□□□ -1.487e-20■■■■■ 28.2
SSBP05455 RBMX-210ENST00000565907 563 ntTSL 216.06■□□□□ 0.164e-19■■□□□ 12
SSBP05455 RBMX-204ENST00000464781 1852 ntTSL 215.41■□□□□ 0.064e-19■■□□□ 12
SSBP05455 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC14.43□□□□□ -0.14e-19■■□□□ 12
SSBP05455 RBMX-201ENST00000320676 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.234e-19■■□□□ 12
SSBP05455 RBMX-208ENST00000563370 577 ntTSL 313.53□□□□□ -0.244e-19■■□□□ 12
SSBP05455 RBMX-211ENST00000567262 477 ntTSL 513.53□□□□□ -0.244e-19■■□□□ 12
SSBP05455 RBMX-212ENST00000568578 4887 ntTSL 1 (best)10.88□□□□□ -0.674e-19■■□□□ 12
SSBP05455 RBMX-207ENST00000562646 2148 ntTSL 1 (best) BASIC10.43□□□□□ -0.744e-19■■□□□ 12
SSBP05455 RBMX-202ENST00000419968 940 ntTSL 510.26□□□□□ -0.774e-19■■□□□ 12
SSBP05455 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.02□□□□□ -1.454e-19■■□□□ 12
SSBP05455 SNORD61-201ENST00000384252 73 ntBASIC2.43□□□□□ -2.024e-19■■□□□ 12
SSBP05455 ZFAS1-207ENST00000458653 596 ntTSL 231.37■■■□□ 2.612e-18■□□□□ 11.2
SSBP05455 ZFAS1-202ENST00000371743 1008 ntTSL 1 (best)27.76■■■□□ 2.032e-18■□□□□ 11.2
SSBP05455 ZFAS1-203ENST00000417721 860 ntTSL 1 (best)26.88■■□□□ 1.892e-18■□□□□ 11.2
SSBP05455 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.06■■□□□ 1.442e-18■□□□□ 11.2
SSBP05455 ZFAS1-205ENST00000441722 946 ntTSL 1 (best)24.06■■□□□ 1.442e-18■□□□□ 11.2
SSBP05455 ZFAS1-210ENST00000623640 732 ntTSL 2 BASIC11.06□□□□□ -0.642e-18■□□□□ 11.2
SSBP05455 ZFAS1-209ENST00000620594 508 ntTSL 38.58□□□□□ -1.042e-18■□□□□ 11.2
SSBP05455 ZFAS1-204ENST00000428008 566 ntTSL 28.23□□□□□ -1.092e-18■□□□□ 11.2
SSBP05455 ZFAS1-201ENST00000326677 504 ntTSL 1 (best)8.21□□□□□ -1.12e-18■□□□□ 11.2
SSBP05455 SNORD12-201ENST00000391002 90 ntBASIC1.66□□□□□ -2.142e-18■□□□□ 11.2
SSBP05455 RNA5SP242-201ENST00000364171 118 ntBASIC6.56□□□□□ -1.361e-17■□□□□ 10
SSBP05455 AGBL5-207ENST00000453161 673 ntTSL 314.31□□□□□ -0.121e-17■■■■■ 31.2
SSBP05455 SMC4-221ENST00000489573 1553 ntTSL 1 (best)24.18■■□□□ 1.469e-17■■■■■ 55.5
SSBP05455 SMC4-209ENST00000468653 1756 ntTSL 221.22■□□□□ 0.999e-17■■■■■ 55.5
SSBP05455 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.919e-17■■■■■ 55.5
SSBP05455 SMC4-211ENST00000469858 1971 ntTSL 220.29■□□□□ 0.849e-17■■■■■ 55.5
SSBP05455 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC18.05■□□□□ 0.489e-17■■■■■ 55.5
SSBP05455 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.039e-17■■■■■ 55.5
SSBP05455 SMC4-210ENST00000469762 3998 ntTSL 2 BASIC11.24□□□□□ -0.619e-17■■■■■ 55.5
SSBP05455 SMC4-214ENST00000472991 582 ntTSL 510.1□□□□□ -0.799e-17■■■■■ 55.5
SSBP05455 SMC4-213ENST00000472282 667 ntTSL 310.1□□□□□ -0.799e-17■■■■■ 55.5
SSBP05455 SMC4-212ENST00000470240 724 ntTSL 38.85□□□□□ -0.999e-17■■■■■ 55.5
SSBP05455 SMC4-219ENST00000487747 637 ntTSL 57.11□□□□□ -1.279e-17■■■■■ 55.5
SSBP05455 SMC4-227ENST00000497984 563 ntTSL 56.56□□□□□ -1.369e-17■■■■■ 55.5
SSBP05455 SMC4-208ENST00000467468 566 ntTSL 46.18□□□□□ -1.429e-17■■■■■ 55.5
SSBP05455 MIR15B-201ENST00000385045 98 ntBASIC2.64□□□□□ -1.999e-17■■■■■ 55.5
SSBP05455 THEM7P-201ENST00000419556 672 ntBASIC7.35□□□□□ -1.234e-16■■■■■ 70.4
SSBP05455 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.49■■□□□ 1.511e-15■■■■■ 27
SSBP05455 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.971e-15■■■■■ 27
SSBP05455 LLGL2-220ENST00000582860 638 ntTSL 318.89■□□□□ 0.611e-15■■■■■ 27
SSBP05455 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.34■□□□□ 0.531e-15■■■■■ 27
SSBP05455 LLGL2-215ENST00000580027 1875 ntTSL 218.26■□□□□ 0.511e-15■■■■■ 27
SSBP05455 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.05■□□□□ 0.481e-15■■■■■ 27
SSBP05455 LLGL2-205ENST00000577200 3192 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.191e-15■■■■■ 27
SSBP05455 LLGL2-204ENST00000545227 3527 ntTSL 212.88□□□□□ -0.351e-15■■■■■ 27
SSBP05455 AC124068.2-201ENST00000569473 1109 ntBASIC16.16■□□□□ 0.181e-15■■■■■ 61.6
SSBP05455 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.613e-15■■■■■ 65.1
SSBP05455 EIF4G2-215ENST00000530564 849 ntTSL 29.11□□□□□ -0.954e-15■■■■□ 20
SSBP05455 LIMD1-AS1-202ENST00000429798 955 ntTSL 1 (best)11.45□□□□□ -0.585e-15■■■■■ 36.5
SSBP05455 EIF4G2-218ENST00000531416 1969 ntTSL 217.55■□□□□ 0.47e-15■■■■□ 19.4
SSBP05455 EIF4G2-225ENST00000532383 6769 ntTSL 1 (best)11.25□□□□□ -0.617e-15■■■■□ 19.4
SSBP05455 EIF4G2-201ENST00000339995 3978 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.667e-15■■■■□ 19.4
SSBP05455 EIF4G2-232ENST00000640650 2724 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.727e-15■■■■□ 19.4
SSBP05455 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC9.28□□□□□ -0.927e-15■■■■□ 19.4
SSBP05455 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.977e-15■■■■□ 19.4
SSBP05455 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.077e-15■■■■□ 19.4
SSBP05455 SNORD97-201ENST00000459187 142 ntBASIC5.16□□□□□ -1.587e-15■■■■□ 19.4
SSBP05455 EIF4G2-222ENST00000532120 223 ntTSL 33.73□□□□□ -1.817e-15■■■■□ 19.4
SSBP05455 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.072e-14■■■■■ 48.9
SSBP05455 LINC00240-203ENST00000606878 927 ntTSL 1 (best)18.32■□□□□ 0.522e-14■■■■■ 48
SSBP05455 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC22.52■■□□□ 1.24e-14■■■■□ 22.8
SSBP05455 RPS8-207ENST00000485390 1115 ntTSL 1 (best)23.46■■□□□ 1.359e-14■□□□□ 10.8
SSBP05455 RPS8-204ENST00000470475 981 ntTSL 216.48■□□□□ 0.239e-14■□□□□ 10.8
SSBP05455 RPS8-208ENST00000497035 694 ntTSL 316.46■□□□□ 0.239e-14■□□□□ 10.8
SSBP05455 RPS8-202ENST00000396651 881 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.379e-14■□□□□ 10.8
SSBP05455 RPS8-201ENST00000372209 685 ntTSL 2 BASIC11.73□□□□□ -0.539e-14■□□□□ 10.8
SSBP05455 SNORD46-201ENST00000364043 104 ntBASIC8.53□□□□□ -1.049e-14■□□□□ 10.8
SSBP05455 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.19■□□□□ 0.821e-13■■■■■ 47
SSBP05455 MST1R-205ENST00000440292 810 ntTSL 315.67■□□□□ 0.11e-13■■■■■ 47
SSBP05455 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.011e-13■■■■■ 47
SSBP05455 MST1R-215ENST00000621387 4449 ntTSL 1 (best) BASIC14.76□□□□□ -0.051e-13■■■■■ 47
SSBP05455 MST1R-203ENST00000411578 4683 ntTSL 514□□□□□ -0.171e-13■■■■■ 47
SSBP05455 MST1R-213ENST00000612032 1065 ntTSL 1 (best) BASIC13.59□□□□□ -0.231e-13■■■■■ 47
SSBP05455 MST1R-202ENST00000344206 4198 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.421e-13■■■■■ 47
SSBP05455 MST1R-206ENST00000463789 558 ntTSL 212.4□□□□□ -0.421e-13■■■■■ 47
SSBP05455 MST1R-204ENST00000434765 854 ntTSL 512.4□□□□□ -0.421e-13■■■■■ 47
SSBP05455 FMC1-205ENST00000488886 432 ntTSL 316.66■□□□□ 0.262e-13■■■□□ 18.1
SSBP05455 FMC1-203ENST00000481123 460 ntTSL 216.52■□□□□ 0.242e-13■■■□□ 18.1
SSBP05455 FMC1-202ENST00000468383 345 ntTSL 316.25■□□□□ 0.192e-13■■■□□ 18.1
SSBP05455 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC15.28■□□□□ 0.042e-13■■■□□ 18.1
SSBP05455 FMC1-204ENST00000482181 386 ntTSL 214.52□□□□□ -0.092e-13■■■□□ 18.1
SSBP05455 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.87■■□□□ 1.259e-13■■□□□ 11.9
SSBP05455 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.45■□□□□ 0.869e-13■■□□□ 11.9
SSBP05455 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.679e-13■■□□□ 11.9
SSBP05455 VEGFA-215ENST00000497139 2746 ntTSL 1 (best)14.41□□□□□ -0.19e-13■■□□□ 11.9
SSBP05455 VEGFA-212ENST00000480614 12167 ntTSL 1 (best)11.14□□□□□ -0.639e-13■■□□□ 11.9
SSBP05455 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.51■□□□□ 0.559e-13■□□□□ 9.2
SSBP05455 SNHG5-203ENST00000420199 1002 ntTSL 317.14■□□□□ 0.339e-13■□□□□ 9.2
SSBP05455 SNHG5-215ENST00000623163 851 ntTSL 516.02■□□□□ 0.169e-13■□□□□ 9.2
SSBP05455 SNHG5-209ENST00000435947 696 ntTSL 215.35■□□□□ 0.059e-13■□□□□ 9.2
SSBP05455 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC14.43□□□□□ -0.19e-13■□□□□ 9.2
SSBP05455 SNHG5-206ENST00000428833 641 ntTSL 213.52□□□□□ -0.259e-13■□□□□ 9.2
SSBP05455 SNHG5-210ENST00000453754 401 ntTSL 313.47□□□□□ -0.259e-13■□□□□ 9.2
SSBP05455 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC13.26□□□□□ -0.299e-13■□□□□ 9.2
SSBP05455 SNHG5-207ENST00000431043 998 ntTSL 213.26□□□□□ -0.299e-13■□□□□ 9.2
Retrieved 100 of 672 protein–RNA pairs in 17 ms