Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU6-930P-201ENST00000390938 100 ntBASIC-1.45□□□□□ -2.64
ZNF540Q8NDQ6 MIR4748-201ENST00000578076 82 ntBASIC-1.45□□□□□ -2.64
ZNF540Q8NDQ6 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.46□□□□□ -2.64
ZNF540Q8NDQ6 RNA5SP224-201ENST00000365069 126 ntBASIC-1.47□□□□□ -2.64
ZNF540Q8NDQ6 RNU6-59P-201ENST00000384787 107 ntBASIC-1.47□□□□□ -2.64
ZNF540Q8NDQ6 RNU6-345P-201ENST00000517001 107 ntBASIC-1.47□□□□□ -2.64
ZNF540Q8NDQ6 RNA5SP405-201ENST00000363059 114 ntBASIC-1.48□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.48□□□□□ -2.65
ZNF540Q8NDQ6 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.48□□□□□ -2.65
ZNF540Q8NDQ6 RNU6-118P-201ENST00000516552 102 ntBASIC-1.48□□□□□ -2.65
ZNF540Q8NDQ6 RNU6-822P-201ENST00000362707 106 ntBASIC-1.49□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.5□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.206-201ENST00000364136 102 ntBASIC-1.5□□□□□ -2.65
ZNF540Q8NDQ6 MTND4LP19-201ENST00000403051 166 ntBASIC-1.5□□□□□ -2.65
ZNF540Q8NDQ6 RNU6-141P-201ENST00000410499 105 ntBASIC-1.5□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.51□□□□□ -2.65
ZNF540Q8NDQ6 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.52□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.53□□□□□ -2.65
ZNF540Q8NDQ6 Y_RNA.63-201ENST00000362841 102 ntBASIC-1.54□□□□□ -2.66
ZNF540Q8NDQ6 RNU6-194P-201ENST00000363862 105 ntBASIC-1.54□□□□□ -2.66
ZNF540Q8NDQ6 SNORD114-3-201ENST00000364969 75 ntBASIC-1.54□□□□□ -2.66
ZNF540Q8NDQ6 MIR545-201ENST00000385085 106 ntBASIC-1.55□□□□□ -2.66
ZNF540Q8NDQ6 RNU6-836P-201ENST00000362920 107 ntBASIC-1.56□□□□□ -2.66
ZNF540Q8NDQ6 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.56□□□□□ -2.66
ZNF540Q8NDQ6 SNORD45C-201ENST00000383893 79 ntBASIC-1.57□□□□□ -2.66
ZNF540Q8NDQ6 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.57□□□□□ -2.66
ZNF540Q8NDQ6 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.58□□□□□ -2.66
ZNF540Q8NDQ6 MIR656-201ENST00000385224 78 ntBASIC-1.58□□□□□ -2.66
ZNF540Q8NDQ6 SNORD115.2-201ENST00000391126 59 ntBASIC-1.58□□□□□ -2.66
ZNF540Q8NDQ6 RNY4P27-201ENST00000363341 96 ntBASIC-1.59□□□□□ -2.66
ZNF540Q8NDQ6 MIR1207-201ENST00000408249 87 ntBASIC-1.62□□□□□ -2.67
ZNF540Q8NDQ6 RNU6-854P-201ENST00000364036 107 ntBASIC-1.63□□□□□ -2.67
ZNF540Q8NDQ6 Y_RNA.519-201ENST00000384553 102 ntBASIC-1.63□□□□□ -2.67
ZNF540Q8NDQ6 MIR3139-201ENST00000579145 76 ntBASIC-1.64□□□□□ -2.67
ZNF540Q8NDQ6 RNY4P9-201ENST00000363194 97 ntBASIC-1.66□□□□□ -2.68
ZNF540Q8NDQ6 AL731768.1-201ENST00000603124 139 ntBASIC-1.66□□□□□ -2.68
ZNF540Q8NDQ6 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.68□□□□□ -2.68
ZNF540Q8NDQ6 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.68□□□□□ -2.68
ZNF540Q8NDQ6 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.68□□□□□ -2.68
ZNF540Q8NDQ6 RNU6-987P-201ENST00000384759 104 ntBASIC-1.69□□□□□ -2.68
ZNF540Q8NDQ6 SNX3P1Y-201ENST00000615757 176 ntBASIC-1.69□□□□□ -2.68
ZNF540Q8NDQ6 RNU4-37P-201ENST00000410214 84 ntBASIC-1.7□□□□□ -2.68
ZNF540Q8NDQ6 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.7□□□□□ -2.68
ZNF540Q8NDQ6 RNU6-1277P-201ENST00000364561 107 ntBASIC-1.71□□□□□ -2.68
ZNF540Q8NDQ6 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.72□□□□□ -2.68
ZNF540Q8NDQ6 RNU6-1340P-201ENST00000384438 107 ntBASIC-1.73□□□□□ -2.69
ZNF540Q8NDQ6 MT-TM-201ENST00000387377 68 ntBASIC-1.73□□□□□ -2.69
ZNF540Q8NDQ6 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.76□□□□□ -2.69
ZNF540Q8NDQ6 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.77□□□□□ -2.69
ZNF540Q8NDQ6 RNU6-737P-201ENST00000365370 107 ntBASIC-1.78□□□□□ -2.69
ZNF540Q8NDQ6 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.79□□□□□ -2.7
ZNF540Q8NDQ6 AL359920.1-201ENST00000618332 176 ntBASIC-1.82□□□□□ -2.7
ZNF540Q8NDQ6 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.83□□□□□ -2.7
ZNF540Q8NDQ6 MIR124-1-201ENST00000385275 85 ntBASIC-1.84□□□□□ -2.7
ZNF540Q8NDQ6 Y_RNA.663-201ENST00000516043 101 ntBASIC-1.84□□□□□ -2.7
ZNF540Q8NDQ6 MIRLET7A3-201ENST00000362116 74 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 MIR496-201ENST00000385226 102 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 SNORD111B-201ENST00000408587 80 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 MIR5693-201ENST00000577722 73 ntBASIC-1.86□□□□□ -2.71
ZNF540Q8NDQ6 RNU6-1161P-201ENST00000516176 102 ntBASIC-1.87□□□□□ -2.71
ZNF540Q8NDQ6 RNU6-119P-201ENST00000364882 107 ntBASIC-1.88□□□□□ -2.71
ZNF540Q8NDQ6 Y_RNA.406-201ENST00000383984 100 ntBASIC-1.88□□□□□ -2.71
ZNF540Q8NDQ6 U6.103-201ENST00000637085 61 ntBASIC-1.88□□□□□ -2.71
ZNF540Q8NDQ6 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.89□□□□□ -2.71
ZNF540Q8NDQ6 RNY4P25-201ENST00000459254 96 ntBASIC-1.89□□□□□ -2.71
ZNF540Q8NDQ6 MIR548AH-201ENST00000637109 76 ntBASIC-1.89□□□□□ -2.71
ZNF540Q8NDQ6 Y_RNA.612-201ENST00000410717 95 ntBASIC-1.9□□□□□ -2.71
ZNF540Q8NDQ6 SNORD115-45-201ENST00000391078 81 ntBASIC-1.91□□□□□ -2.72
ZNF540Q8NDQ6 RNU6-1043P-201ENST00000410355 99 ntBASIC-1.92□□□□□ -2.72
ZNF540Q8NDQ6 Y_RNA.652-201ENST00000458902 102 ntBASIC-1.92□□□□□ -2.72
ZNF540Q8NDQ6 Y_RNA.79-201ENST00000362992 113 ntBASIC-1.94□□□□□ -2.72
ZNF540Q8NDQ6 RNU6-485P-201ENST00000363475 107 ntBASIC-1.94□□□□□ -2.72
ZNF540Q8NDQ6 RNU6-422P-201ENST00000384632 107 ntBASIC-1.97□□□□□ -2.72
ZNF540Q8NDQ6 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.98□□□□□ -2.73
ZNF540Q8NDQ6 RNU6-230P-201ENST00000362457 104 ntBASIC-1.99□□□□□ -2.73
ZNF540Q8NDQ6 Y_RNA.137-201ENST00000363455 112 ntBASIC-2.01□□□□□ -2.73
ZNF540Q8NDQ6 SNORD114-13-201ENST00000364377 74 ntBASIC-2.01□□□□□ -2.73
ZNF540Q8NDQ6 RNU6-724P-201ENST00000390958 105 ntBASIC-2.02□□□□□ -2.73
ZNF540Q8NDQ6 SNORD54-201ENST00000459159 67 ntBASIC-2.03□□□□□ -2.73
ZNF540Q8NDQ6 RNU6-1091P-201ENST00000363945 107 ntBASIC-2.07□□□□□ -2.74
ZNF540Q8NDQ6 Y_RNA.266-201ENST00000364678 96 ntBASIC-2.07□□□□□ -2.74
ZNF540Q8NDQ6 Y_RNA.830-201ENST00000628531 96 ntBASIC-2.07□□□□□ -2.74
ZNF540Q8NDQ6 RNU6-1044P-201ENST00000384755 107 ntBASIC-2.1□□□□□ -2.75
ZNF540Q8NDQ6 RNA5SP93-201ENST00000362525 114 ntBASIC-2.11□□□□□ -2.75
ZNF540Q8NDQ6 RNY4P7-201ENST00000364600 96 ntBASIC-2.11□□□□□ -2.75
ZNF540Q8NDQ6 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.11□□□□□ -2.75
ZNF540Q8NDQ6 RNU6-1024P-201ENST00000384199 107 ntBASIC-2.11□□□□□ -2.75
ZNF540Q8NDQ6 RNU6-133P-201ENST00000383989 107 ntBASIC-2.16□□□□□ -2.76
ZNF540Q8NDQ6 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.2□□□□□ -2.76
ZNF540Q8NDQ6 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.23□□□□□ -2.77
ZNF540Q8NDQ6 RNU6-1191P-201ENST00000516799 107 ntBASIC-2.23□□□□□ -2.77
ZNF540Q8NDQ6 RNU6-620P-201ENST00000384017 96 ntBASIC-2.24□□□□□ -2.77
ZNF540Q8NDQ6 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-2.24□□□□□ -2.77
ZNF540Q8NDQ6 RNU6-894P-201ENST00000517094 105 ntBASIC-2.24□□□□□ -2.77
ZNF540Q8NDQ6 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.27□□□□□ -2.77
ZNF540Q8NDQ6 Y_RNA.658-201ENST00000515990 97 ntBASIC-2.33□□□□□ -2.78
ZNF540Q8NDQ6 MIR509-1-201ENST00000385265 94 ntBASIC-2.34□□□□□ -2.78
ZNF540Q8NDQ6 MIR509-2-201ENST00000390724 91 ntBASIC-2.34□□□□□ -2.78
ZNF540Q8NDQ6 RNY4-201ENST00000516507 96 ntBASIC-2.34□□□□□ -2.78
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms