Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNU6-320P-201ENST00000516511 106 ntBASIC-0.34□□□□□ -2.46
MSH5O43196 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.37□□□□□ -2.47
MSH5O43196 RNA5SP86-201ENST00000390869 98 ntBASIC-0.38□□□□□ -2.47
MSH5O43196 RPS29P8-201ENST00000445109 171 ntBASIC-0.38□□□□□ -2.47
MSH5O43196 RNA5SP275-201ENST00000363936 118 ntBASIC-0.39□□□□□ -2.47
MSH5O43196 RNA5SP451-201ENST00000410588 110 ntBASIC-0.39□□□□□ -2.47
MSH5O43196 RNA5SP266-201ENST00000410273 108 ntBASIC-0.4□□□□□ -2.47
MSH5O43196 SNX3P1Y-201ENST00000615757 176 ntBASIC-0.41□□□□□ -2.48
MSH5O43196 MIR224-201ENST00000384889 81 ntBASIC-0.42□□□□□ -2.48
MSH5O43196 MIR4748-201ENST00000578076 82 ntBASIC-0.44□□□□□ -2.48
MSH5O43196 RNU6-118P-201ENST00000516552 102 ntBASIC-0.46□□□□□ -2.48
MSH5O43196 MIR196A1-201ENST00000388006 70 ntBASIC-0.47□□□□□ -2.48
MSH5O43196 RNY4P9-201ENST00000363194 97 ntBASIC-0.48□□□□□ -2.49
MSH5O43196 SNORA32.3-201ENST00000384772 121 ntBASIC-0.48□□□□□ -2.49
MSH5O43196 MIR548AZ-201ENST00000616567 95 ntBASIC-0.48□□□□□ -2.49
MSH5O43196 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.5□□□□□ -2.49
MSH5O43196 MIR548AX-201ENST00000580117 73 ntBASIC-0.5□□□□□ -2.49
MSH5O43196 RNY4P25-201ENST00000459254 96 ntBASIC-0.54□□□□□ -2.5
MSH5O43196 RNU4-63P-201ENST00000411313 118 ntBASIC-0.55□□□□□ -2.5
MSH5O43196 MIR4756-201ENST00000577874 78 ntBASIC-0.56□□□□□ -2.5
MSH5O43196 Y_RNA.211-201ENST00000364164 101 ntBASIC-0.58□□□□□ -2.5
MSH5O43196 AC108019.1-201ENST00000512540 175 ntBASIC-0.58□□□□□ -2.5
MSH5O43196 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.61□□□□□ -2.51
MSH5O43196 MIR3681-201ENST00000580089 72 ntBASIC-0.62□□□□□ -2.51
MSH5O43196 SNORD83B-201ENST00000386745 93 ntBASIC-0.63□□□□□ -2.51
MSH5O43196 MT-TQ-201ENST00000387372 72 ntBASIC-0.66□□□□□ -2.52
MSH5O43196 SNX3P1X-201ENST00000414887 175 ntBASIC-0.74□□□□□ -2.53
MSH5O43196 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.75□□□□□ -2.53
MSH5O43196 MIR378F-201ENST00000578143 78 ntBASIC-0.76□□□□□ -2.53
MSH5O43196 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.8□□□□□ -2.54
MSH5O43196 Y_RNA.266-201ENST00000364678 96 ntBASIC-0.81□□□□□ -2.54
MSH5O43196 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.81□□□□□ -2.54
MSH5O43196 MIR5693-201ENST00000577722 73 ntBASIC-0.81□□□□□ -2.54
MSH5O43196 Y_RNA.513-201ENST00000384522 100 ntBASIC-0.82□□□□□ -2.54
MSH5O43196 RNU6-1044P-201ENST00000384755 107 ntBASIC-0.82□□□□□ -2.54
MSH5O43196 MIR5591-201ENST00000578248 65 ntBASIC-0.82□□□□□ -2.54
MSH5O43196 MIR4723-201ENST00000585070 81 ntBASIC-0.82□□□□□ -2.54
MSH5O43196 Y_RNA.79-201ENST00000362992 113 ntBASIC-0.85□□□□□ -2.55
MSH5O43196 MIR587-201ENST00000384845 96 ntBASIC-0.85□□□□□ -2.55
MSH5O43196 SCARNA17-201ENST00000516183 144 ntBASIC-0.85□□□□□ -2.55
MSH5O43196 SNORD114-13-201ENST00000364377 74 ntBASIC-0.86□□□□□ -2.55
MSH5O43196 MIR6738-201ENST00000619620 64 ntBASIC-0.86□□□□□ -2.55
MSH5O43196 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-0.86□□□□□ -2.55
MSH5O43196 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.89□□□□□ -2.55
MSH5O43196 RNU6-10P-201ENST00000384036 107 ntBASIC-0.89□□□□□ -2.55
MSH5O43196 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.89□□□□□ -2.55
MSH5O43196 MIR4324-201ENST00000584846 72 ntBASIC-0.89□□□□□ -2.55
MSH5O43196 MIR4770-201ENST00000579149 58 ntBASIC-0.92□□□□□ -2.56
MSH5O43196 MIR4306-201ENST00000583390 91 ntBASIC-0.92□□□□□ -2.56
MSH5O43196 MIR4320-201ENST00000636981 65 ntBASIC-0.92□□□□□ -2.56
MSH5O43196 RNU6-194P-201ENST00000363862 105 ntBASIC-0.94□□□□□ -2.56
MSH5O43196 MIR198-201ENST00000637333 62 ntBASIC-0.95□□□□□ -2.56
MSH5O43196 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.96□□□□□ -2.56
MSH5O43196 MIR664B-201ENST00000626756 61 ntBASIC-0.96□□□□□ -2.56
MSH5O43196 RNY4P19-201ENST00000362530 96 ntBASIC-0.99□□□□□ -2.57
MSH5O43196 MIR601-201ENST00000385256 79 ntBASIC-1.02□□□□□ -2.57
MSH5O43196 SNORD18.1-201ENST00000363807 70 ntBASIC-1.06□□□□□ -2.58
MSH5O43196 HLA-S-202ENST00000425174 53 ntBASIC-1.06□□□□□ -2.58
MSH5O43196 MIR3115-201ENST00000577915 68 ntBASIC-1.06□□□□□ -2.58
MSH5O43196 RNA5SP461-201ENST00000516451 104 ntBASIC-1.09□□□□□ -2.58
MSH5O43196 RNA5SP405-201ENST00000363059 114 ntBASIC-1.1□□□□□ -2.59
MSH5O43196 RNU6-230P-201ENST00000362457 104 ntBASIC-1.12□□□□□ -2.59
MSH5O43196 MIR3165-201ENST00000579874 75 ntBASIC-1.13□□□□□ -2.59
MSH5O43196 U4.2-201ENST00000618561 85 ntBASIC-1.13□□□□□ -2.59
MSH5O43196 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.19□□□□□ -2.6
MSH5O43196 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.19□□□□□ -2.6
MSH5O43196 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.19□□□□□ -2.6
MSH5O43196 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.19□□□□□ -2.6
MSH5O43196 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.19□□□□□ -2.6
MSH5O43196 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.2□□□□□ -2.6
MSH5O43196 RNA5SP180-201ENST00000516181 101 ntBASIC-1.21□□□□□ -2.6
MSH5O43196 MIR1285-2-201ENST00000408311 88 ntBASIC-1.24□□□□□ -2.61
MSH5O43196 MIR365A-201ENST00000362260 87 ntBASIC-1.26□□□□□ -2.61
MSH5O43196 RNU6-1306P-201ENST00000365219 99 ntBASIC-1.28□□□□□ -2.61
MSH5O43196 RNU6-665P-201ENST00000384639 107 ntBASIC-1.28□□□□□ -2.61
MSH5O43196 MIR4441-201ENST00000582623 100 ntBASIC-1.28□□□□□ -2.61
MSH5O43196 MIR1207-201ENST00000408249 87 ntBASIC-1.29□□□□□ -2.62
MSH5O43196 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.29□□□□□ -2.62
MSH5O43196 Y_RNA.830-201ENST00000628531 96 ntBASIC-1.29□□□□□ -2.62
MSH5O43196 SNORD114-3-201ENST00000364969 75 ntBASIC-1.32□□□□□ -2.62
MSH5O43196 MIR1246-201ENST00000636535 73 ntBASIC-1.37□□□□□ -2.63
MSH5O43196 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.4□□□□□ -2.63
MSH5O43196 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.41□□□□□ -2.64
MSH5O43196 RNU6-916P-201ENST00000516088 109 ntBASIC-1.41□□□□□ -2.64
MSH5O43196 RNY4P27-201ENST00000363341 96 ntBASIC-1.42□□□□□ -2.64
MSH5O43196 TARS-215ENST00000626210 201 ntTSL 5 BASIC-1.46□□□□□ -2.64
MSH5O43196 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.47□□□□□ -2.64
MSH5O43196 Y_RNA.684-201ENST00000516510 99 ntBASIC-1.53□□□□□ -2.65
MSH5O43196 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.57□□□□□ -2.66
MSH5O43196 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.58□□□□□ -2.66
MSH5O43196 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.63□□□□□ -2.67
MSH5O43196 MIR3139-201ENST00000579145 76 ntBASIC-1.68□□□□□ -2.68
MSH5O43196 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.72□□□□□ -2.68
MSH5O43196 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.72□□□□□ -2.68
MSH5O43196 RNU6-119P-201ENST00000364882 107 ntBASIC-1.72□□□□□ -2.68
MSH5O43196 MIR496-201ENST00000385226 102 ntBASIC-1.72□□□□□ -2.68
MSH5O43196 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.72□□□□□ -2.68
MSH5O43196 MT-TM-201ENST00000387377 68 ntBASIC-1.8□□□□□ -2.7
MSH5O43196 MIR363-201ENST00000384840 75 ntBASIC-1.81□□□□□ -2.7
MSH5O43196 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.89□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 222.6 ms