Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 Y_RNA.815-201ENST00000616655 112 ntBASIC-0.23□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.795-201ENST00000619475 112 ntBASIC-0.23□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.827-201ENST00000638104 112 ntBASIC-0.23□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 SNORA32.3-201ENST00000384772 121 ntBASIC-0.24□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 MIR548AM-201ENST00000584298 74 ntBASIC-0.24□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 RNA5SP275-201ENST00000363936 118 ntBASIC-0.25□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 RNU6-737P-201ENST00000365370 107 ntBASIC-0.25□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 RNU6-841P-201ENST00000383872 107 ntBASIC-0.26□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 Y_RNA.678-201ENST00000516408 96 ntBASIC-0.26□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 MIR4499-201ENST00000584834 69 ntBASIC-0.26□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 MIR6502-201ENST00000617296 76 ntBASIC-0.26□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.27□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 RNA5SP461-201ENST00000516451 104 ntBASIC-0.27□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 MIR487B-201ENST00000385021 84 ntBASIC-0.28□□□□□ -2.45
SENP3-EIF4A1A0A087X0R7 MIR196A1-201ENST00000388006 70 ntBASIC-0.29□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 uc_338.19-201ENST00000616808 99 ntBASIC-0.3□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.31□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 MIR1285-2-201ENST00000408311 88 ntBASIC-0.31□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.32□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 MIR548AZ-201ENST00000616567 95 ntBASIC-0.32□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 MIR6738-201ENST00000619620 64 ntBASIC-0.32□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 MIR548AH-201ENST00000637109 76 ntBASIC-0.32□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 RNU6-706P-201ENST00000517229 104 ntBASIC-0.34□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 MIR4520-1-201ENST00000582609 70 ntBASIC-0.34□□□□□ -2.46
SENP3-EIF4A1A0A087X0R7 RNU6-627P-201ENST00000364032 102 ntBASIC-0.35□□□□□ -2.47
SENP3-EIF4A1A0A087X0R7 RNA5SP180-201ENST00000516181 101 ntBASIC-0.35□□□□□ -2.47
SENP3-EIF4A1A0A087X0R7 RNU6-1161P-201ENST00000516176 102 ntBASIC-0.36□□□□□ -2.47
SENP3-EIF4A1A0A087X0R7 Y_RNA.403-201ENST00000383977 101 ntBASIC-0.37□□□□□ -2.47
SENP3-EIF4A1A0A087X0R7 Y_RNA.475-201ENST00000384345 101 ntBASIC-0.38□□□□□ -2.47
SENP3-EIF4A1A0A087X0R7 RNU6-892P-201ENST00000410335 99 ntBASIC-0.39□□□□□ -2.47
SENP3-EIF4A1A0A087X0R7 SNORD83B-201ENST00000386745 93 ntBASIC-0.4□□□□□ -2.47
SENP3-EIF4A1A0A087X0R7 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.4□□□□□ -2.47
SENP3-EIF4A1A0A087X0R7 RNA5SP86-201ENST00000390869 98 ntBASIC-0.42□□□□□ -2.48
SENP3-EIF4A1A0A087X0R7 SNORD115-45-201ENST00000391078 81 ntBASIC-0.42□□□□□ -2.48
SENP3-EIF4A1A0A087X0R7 MIR4324-201ENST00000584846 72 ntBASIC-0.42□□□□□ -2.48
SENP3-EIF4A1A0A087X0R7 Y_RNA.663-201ENST00000516043 101 ntBASIC-0.43□□□□□ -2.48
SENP3-EIF4A1A0A087X0R7 AL731768.1-201ENST00000603124 139 ntBASIC-0.45□□□□□ -2.48
SENP3-EIF4A1A0A087X0R7 RNU6-1277P-201ENST00000364561 107 ntBASIC-0.47□□□□□ -2.48
SENP3-EIF4A1A0A087X0R7 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-0.48□□□□□ -2.49
SENP3-EIF4A1A0A087X0R7 RNY4-201ENST00000516507 96 ntBASIC-0.48□□□□□ -2.49
SENP3-EIF4A1A0A087X0R7 MIR4756-201ENST00000577874 78 ntBASIC-0.48□□□□□ -2.49
SENP3-EIF4A1A0A087X0R7 SCARNA17-201ENST00000516183 144 ntBASIC-0.49□□□□□ -2.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.591-201ENST00000410228 104 ntBASIC-0.5□□□□□ -2.49
SENP3-EIF4A1A0A087X0R7 AC108019.1-201ENST00000512540 175 ntBASIC-0.51□□□□□ -2.49
SENP3-EIF4A1A0A087X0R7 MIR4306-201ENST00000583390 91 ntBASIC-0.53□□□□□ -2.49
SENP3-EIF4A1A0A087X0R7 Y_RNA.211-201ENST00000364164 101 ntBASIC-0.54□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 MIR5591-201ENST00000578248 65 ntBASIC-0.54□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.137-201ENST00000363455 112 ntBASIC-0.55□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.652-201ENST00000458902 102 ntBASIC-0.55□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.501-201ENST00000384467 103 ntBASIC-0.56□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 MIR4748-201ENST00000578076 82 ntBASIC-0.56□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 RNU6-118P-201ENST00000516552 102 ntBASIC-0.57□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.57□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 RNU6-226P-201ENST00000363778 107 ntBASIC-0.58□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 Y_RNA.502-201ENST00000384478 113 ntBASIC-0.58□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 AL359920.1-201ENST00000618332 176 ntBASIC-0.58□□□□□ -2.5
SENP3-EIF4A1A0A087X0R7 MIR4770-201ENST00000579149 58 ntBASIC-0.6□□□□□ -2.51
SENP3-EIF4A1A0A087X0R7 HLA-S-202ENST00000425174 53 ntBASIC-0.62□□□□□ -2.51
SENP3-EIF4A1A0A087X0R7 SNX3P1Y-201ENST00000615757 176 ntBASIC-0.62□□□□□ -2.51
SENP3-EIF4A1A0A087X0R7 MIR3115-201ENST00000577915 68 ntBASIC-0.63□□□□□ -2.51
SENP3-EIF4A1A0A087X0R7 MIRLET7A3-201ENST00000362116 74 ntBASIC-0.64□□□□□ -2.51
SENP3-EIF4A1A0A087X0R7 Y_RNA.284-201ENST00000364806 102 ntBASIC-0.64□□□□□ -2.51
SENP3-EIF4A1A0A087X0R7 SOX2OT_exon4.1-201ENST00000610449 109 ntBASIC-0.65□□□□□ -2.51
SENP3-EIF4A1A0A087X0R7 RNU6-119P-201ENST00000364882 107 ntBASIC-0.66□□□□□ -2.52
SENP3-EIF4A1A0A087X0R7 RNY4P9-201ENST00000363194 97 ntBASIC-0.67□□□□□ -2.52
SENP3-EIF4A1A0A087X0R7 SNORD18.1-201ENST00000363807 70 ntBASIC-0.67□□□□□ -2.52
SENP3-EIF4A1A0A087X0R7 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.67□□□□□ -2.52
SENP3-EIF4A1A0A087X0R7 Y_RNA.612-201ENST00000410717 95 ntBASIC-0.67□□□□□ -2.52
SENP3-EIF4A1A0A087X0R7 RNA5SP449-201ENST00000516871 130 ntBASIC-0.68□□□□□ -2.52
SENP3-EIF4A1A0A087X0R7 MIR664B-201ENST00000626756 61 ntBASIC-0.69□□□□□ -2.52
SENP3-EIF4A1A0A087X0R7 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-0.71□□□□□ -2.52
SENP3-EIF4A1A0A087X0R7 RNU6-194P-201ENST00000363862 105 ntBASIC-0.73□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 RNY4P25-201ENST00000459254 96 ntBASIC-0.73□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 RNA5SP405-201ENST00000363059 114 ntBASIC-0.74□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-0.74□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 MIR5693-201ENST00000577722 73 ntBASIC-0.74□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.165-201ENST00000363721 102 ntBASIC-0.75□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.513-201ENST00000384522 100 ntBASIC-0.75□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.79-201ENST00000362992 113 ntBASIC-0.76□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 MIR3165-201ENST00000579874 75 ntBASIC-0.76□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 MIR496-201ENST00000385226 102 ntBASIC-0.77□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 RNU4-85P-201ENST00000364675 123 ntBASIC-0.78□□□□□ -2.53
SENP3-EIF4A1A0A087X0R7 Y_RNA.442-201ENST00000384131 102 ntBASIC-0.8□□□□□ -2.54
SENP3-EIF4A1A0A087X0R7 VTRNA2-1-201ENST00000602301 127 ntBASIC-0.81□□□□□ -2.54
SENP3-EIF4A1A0A087X0R7 RNU6-1044P-201ENST00000384755 107 ntBASIC-0.82□□□□□ -2.54
SENP3-EIF4A1A0A087X0R7 SNORD114-13-201ENST00000364377 74 ntBASIC-0.84□□□□□ -2.54
SENP3-EIF4A1A0A087X0R7 RNU6-1306P-201ENST00000365219 99 ntBASIC-0.84□□□□□ -2.54
SENP3-EIF4A1A0A087X0R7 RNU6-230P-201ENST00000362457 104 ntBASIC-0.85□□□□□ -2.55
SENP3-EIF4A1A0A087X0R7 Y_RNA.266-201ENST00000364678 96 ntBASIC-0.86□□□□□ -2.55
SENP3-EIF4A1A0A087X0R7 MIR1246-201ENST00000636535 73 ntBASIC-0.87□□□□□ -2.55
SENP3-EIF4A1A0A087X0R7 Y_RNA.232-201ENST00000364369 96 ntBASIC-0.89□□□□□ -2.55
SENP3-EIF4A1A0A087X0R7 RNU6-1247P-201ENST00000516622 98 ntBASIC-0.89□□□□□ -2.55
SENP3-EIF4A1A0A087X0R7 TARS-215ENST00000626210 201 ntTSL 5 BASIC-0.89□□□□□ -2.55
SENP3-EIF4A1A0A087X0R7 MIR3139-201ENST00000579145 76 ntBASIC-0.91□□□□□ -2.56
SENP3-EIF4A1A0A087X0R7 RNA5SP93-201ENST00000362525 114 ntBASIC-0.96□□□□□ -2.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.397-201ENST00000383950 98 ntBASIC-0.97□□□□□ -2.56
SENP3-EIF4A1A0A087X0R7 Y_RNA.421-201ENST00000384052 101 ntBASIC-0.98□□□□□ -2.57
SENP3-EIF4A1A0A087X0R7 MT-TM-201ENST00000387377 68 ntBASIC-0.99□□□□□ -2.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.830-201ENST00000628531 96 ntBASIC-1□□□□□ -2.57
SENP3-EIF4A1A0A087X0R7 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.01□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms