Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR202-201ENST00000362219 110 ntBASIC-1.84□□□□□ -2.7
CCDC3Q9BQI4 MIR466-201ENST00000580653 84 ntBASIC-1.84□□□□□ -2.7
CCDC3Q9BQI4 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.85□□□□□ -2.71
CCDC3Q9BQI4 RNU6-841P-201ENST00000383872 107 ntBASIC-1.85□□□□□ -2.71
CCDC3Q9BQI4 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.85□□□□□ -2.71
CCDC3Q9BQI4 SNORD45.2-201ENST00000363552 72 ntBASIC-1.86□□□□□ -2.71
CCDC3Q9BQI4 AC114801.3-201ENST00000510231 177 ntBASIC-1.87□□□□□ -2.71
CCDC3Q9BQI4 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.87□□□□□ -2.71
CCDC3Q9BQI4 SNORA72.7-201ENST00000516349 94 ntBASIC-1.88□□□□□ -2.71
CCDC3Q9BQI4 MIR548AM-201ENST00000584298 74 ntBASIC-1.88□□□□□ -2.71
CCDC3Q9BQI4 SNORD60-201ENST00000383903 83 ntBASIC-1.89□□□□□ -2.71
CCDC3Q9BQI4 RNU6-530P-201ENST00000391180 107 ntBASIC-1.89□□□□□ -2.71
CCDC3Q9BQI4 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.89□□□□□ -2.71
CCDC3Q9BQI4 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.9□□□□□ -2.71
CCDC3Q9BQI4 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.9□□□□□ -2.71
CCDC3Q9BQI4 MIR581-201ENST00000384895 96 ntBASIC-1.9□□□□□ -2.71
CCDC3Q9BQI4 SNORD18C-201ENST00000362704 69 ntBASIC-1.91□□□□□ -2.72
CCDC3Q9BQI4 SNORD18.1-201ENST00000363807 70 ntBASIC-1.91□□□□□ -2.72
CCDC3Q9BQI4 RNU6-361P-201ENST00000364454 107 ntBASIC-1.91□□□□□ -2.72
CCDC3Q9BQI4 SNORA17.4-201ENST00000391287 132 ntBASIC-1.91□□□□□ -2.72
CCDC3Q9BQI4 AL451105.1-201ENST00000450005 189 ntBASIC-1.91□□□□□ -2.72
CCDC3Q9BQI4 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.93□□□□□ -2.72
CCDC3Q9BQI4 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.93□□□□□ -2.72
CCDC3Q9BQI4 MIR548N-201ENST00000408742 75 ntBASIC-1.93□□□□□ -2.72
CCDC3Q9BQI4 AC108019.1-201ENST00000512540 175 ntBASIC-1.94□□□□□ -2.72
CCDC3Q9BQI4 RNU6-419P-201ENST00000517030 63 ntBASIC-1.95□□□□□ -2.72
CCDC3Q9BQI4 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.96□□□□□ -2.72
CCDC3Q9BQI4 snoU13.10-201ENST00000459301 103 ntBASIC-1.96□□□□□ -2.72
CCDC3Q9BQI4 RNY4P27-201ENST00000363341 96 ntBASIC-1.98□□□□□ -2.73
CCDC3Q9BQI4 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.98□□□□□ -2.73
CCDC3Q9BQI4 MIR548W-201ENST00000581970 74 ntBASIC-1.98□□□□□ -2.73
CCDC3Q9BQI4 RNU4-88P-201ENST00000411220 86 ntBASIC-1.99□□□□□ -2.73
CCDC3Q9BQI4 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.99□□□□□ -2.73
CCDC3Q9BQI4 MIR4426-201ENST00000640330 63 ntBASIC-1.99□□□□□ -2.73
CCDC3Q9BQI4 MIR4756-201ENST00000577874 78 ntBASIC-2.01□□□□□ -2.73
CCDC3Q9BQI4 Y_RNA.543-201ENST00000384649 107 ntBASIC-2.03□□□□□ -2.73
CCDC3Q9BQI4 RNU6-638P-201ENST00000516582 104 ntBASIC-2.04□□□□□ -2.74
CCDC3Q9BQI4 RNU6-980P-201ENST00000516925 103 ntBASIC-2.04□□□□□ -2.74
CCDC3Q9BQI4 RNU6-176P-201ENST00000517196 105 ntBASIC-2.05□□□□□ -2.74
CCDC3Q9BQI4 RNU6-1079P-201ENST00000362861 110 ntBASIC-2.06□□□□□ -2.74
CCDC3Q9BQI4 RNU6-300P-201ENST00000459080 104 ntBASIC-2.06□□□□□ -2.74
CCDC3Q9BQI4 RNU6-983P-201ENST00000516004 103 ntBASIC-2.06□□□□□ -2.74
CCDC3Q9BQI4 RNU6-590P-201ENST00000365039 107 ntBASIC-2.08□□□□□ -2.74
CCDC3Q9BQI4 Y_RNA.722-201ENST00000517279 114 ntBASIC-2.08□□□□□ -2.74
CCDC3Q9BQI4 RNU6-742P-201ENST00000365289 107 ntBASIC-2.09□□□□□ -2.74
CCDC3Q9BQI4 MIR548X-201ENST00000580069 75 ntBASIC-2.09□□□□□ -2.74
CCDC3Q9BQI4 MIR664B-201ENST00000626756 61 ntBASIC-2.09□□□□□ -2.74
CCDC3Q9BQI4 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-2.1□□□□□ -2.75
CCDC3Q9BQI4 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.11□□□□□ -2.75
CCDC3Q9BQI4 Y_RNA.684-201ENST00000516510 99 ntBASIC-2.11□□□□□ -2.75
CCDC3Q9BQI4 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.11□□□□□ -2.75
CCDC3Q9BQI4 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.11□□□□□ -2.75
CCDC3Q9BQI4 MIR379-201ENST00000362218 67 ntBASIC-2.12□□□□□ -2.75
CCDC3Q9BQI4 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.12□□□□□ -2.75
CCDC3Q9BQI4 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.12□□□□□ -2.75
CCDC3Q9BQI4 RNU6-68P-201ENST00000516576 104 ntBASIC-2.12□□□□□ -2.75
CCDC3Q9BQI4 RNU6-1312P-201ENST00000362425 108 ntBASIC-2.13□□□□□ -2.75
CCDC3Q9BQI4 RNU6-912P-201ENST00000363800 104 ntBASIC-2.13□□□□□ -2.75
CCDC3Q9BQI4 Y_RNA.349-201ENST00000365406 102 ntBASIC-2.13□□□□□ -2.75
CCDC3Q9BQI4 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-2.13□□□□□ -2.75
CCDC3Q9BQI4 RNU6-446P-201ENST00000362827 106 ntBASIC-2.14□□□□□ -2.75
CCDC3Q9BQI4 Y_RNA.129-201ENST00000363392 110 ntBASIC-2.14□□□□□ -2.75
CCDC3Q9BQI4 RNU6-1324P-201ENST00000384222 107 ntBASIC-2.14□□□□□ -2.75
CCDC3Q9BQI4 Y_RNA.475-201ENST00000384345 101 ntBASIC-2.14□□□□□ -2.75
CCDC3Q9BQI4 AC097484.2-201ENST00000509147 251 ntBASIC-2.14□□□□□ -2.75
CCDC3Q9BQI4 MIR548AJ2-201ENST00000408539 92 ntBASIC-2.15□□□□□ -2.75
CCDC3Q9BQI4 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.17□□□□□ -2.76
CCDC3Q9BQI4 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.18□□□□□ -2.76
CCDC3Q9BQI4 Y_RNA.320-201ENST00000365144 102 ntBASIC-2.19□□□□□ -2.76
CCDC3Q9BQI4 Y_RNA.647-201ENST00000459194 112 ntBASIC-2.19□□□□□ -2.76
CCDC3Q9BQI4 Y_RNA.640-201ENST00000459296 112 ntBASIC-2.19□□□□□ -2.76
CCDC3Q9BQI4 Y_RNA.803-201ENST00000614432 112 ntBASIC-2.19□□□□□ -2.76
CCDC3Q9BQI4 Y_RNA.815-201ENST00000616655 112 ntBASIC-2.19□□□□□ -2.76
CCDC3Q9BQI4 Y_RNA.795-201ENST00000619475 112 ntBASIC-2.19□□□□□ -2.76
CCDC3Q9BQI4 Y_RNA.827-201ENST00000638104 112 ntBASIC-2.19□□□□□ -2.76
CCDC3Q9BQI4 AC125388.1-201ENST00000459631 156 ntBASIC-2.21□□□□□ -2.76
CCDC3Q9BQI4 RNU6-118P-201ENST00000516552 102 ntBASIC-2.21□□□□□ -2.76
CCDC3Q9BQI4 SNORD113-3-201ENST00000364830 72 ntBASIC-2.22□□□□□ -2.76
CCDC3Q9BQI4 FTX_4.1-201ENST00000616291 147 ntBASIC-2.22□□□□□ -2.76
CCDC3Q9BQI4 RNU6-194P-201ENST00000363862 105 ntBASIC-2.23□□□□□ -2.77
CCDC3Q9BQI4 Y_RNA.501-201ENST00000384467 103 ntBASIC-2.23□□□□□ -2.77
CCDC3Q9BQI4 SNORD113-4-201ENST00000364802 75 ntBASIC-2.24□□□□□ -2.77
CCDC3Q9BQI4 RNU6-829P-201ENST00000363700 112 ntBASIC-2.26□□□□□ -2.77
CCDC3Q9BQI4 RNU6-119P-201ENST00000364882 107 ntBASIC-2.26□□□□□ -2.77
CCDC3Q9BQI4 MIR633-201ENST00000384821 98 ntBASIC-2.26□□□□□ -2.77
CCDC3Q9BQI4 RNA5SP405-201ENST00000363059 114 ntBASIC-2.27□□□□□ -2.77
CCDC3Q9BQI4 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.28□□□□□ -2.77
CCDC3Q9BQI4 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.28□□□□□ -2.77
CCDC3Q9BQI4 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC-2.28□□□□□ -2.77
CCDC3Q9BQI4 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.28□□□□□ -2.77
CCDC3Q9BQI4 MIR4748-201ENST00000578076 82 ntBASIC-2.28□□□□□ -2.77
CCDC3Q9BQI4 MIR1254-1-201ENST00000408257 97 ntBASIC-2.3□□□□□ -2.78
CCDC3Q9BQI4 AC139453.2-201ENST00000487255 133 ntBASIC-2.3□□□□□ -2.78
CCDC3Q9BQI4 MIRLET7A2-201ENST00000362105 72 ntBASIC-2.32□□□□□ -2.78
CCDC3Q9BQI4 Y_RNA.228-201ENST00000364346 98 ntBASIC-2.32□□□□□ -2.78
CCDC3Q9BQI4 Y_RNA.434-201ENST00000384090 100 ntBASIC-2.32□□□□□ -2.78
CCDC3Q9BQI4 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-2.32□□□□□ -2.78
CCDC3Q9BQI4 RNU4-33P-201ENST00000364316 85 ntBASIC-2.33□□□□□ -2.78
CCDC3Q9BQI4 MIR496-201ENST00000385226 102 ntBASIC-2.34□□□□□ -2.78
CCDC3Q9BQI4 AC079150.2-201ENST00000443733 78 ntBASIC-2.35□□□□□ -2.79
Retrieved 100 of 98,524 protein–RNA pairs in 192.8 ms