Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 SNORD45.2-201ENST00000363552 72 ntBASIC-1.61□□□□□ -2.67
SCN2AQ99250 RNA5SP225-201ENST00000410874 135 ntBASIC-1.61□□□□□ -2.67
SCN2AQ99250 U6.97-201ENST00000636904 101 ntBASIC-1.61□□□□□ -2.67
SCN2AQ99250 RNU6-573P-201ENST00000383938 106 ntBASIC-1.62□□□□□ -2.67
SCN2AQ99250 AC103706.3-201ENST00000636297 85 ntBASIC-1.62□□□□□ -2.67
SCN2AQ99250 RNU6-361P-201ENST00000364454 107 ntBASIC-1.63□□□□□ -2.67
SCN2AQ99250 RNA5SP86-201ENST00000390869 98 ntBASIC-1.63□□□□□ -2.67
SCN2AQ99250 MIR548AM-201ENST00000584298 74 ntBASIC-1.63□□□□□ -2.67
SCN2AQ99250 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 RNU6-828P-201ENST00000364876 107 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 AC110620.1-201ENST00000416042 228 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 AC108019.1-201ENST00000512540 175 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 RNU6-231P-201ENST00000517122 103 ntBASIC-1.64□□□□□ -2.67
SCN2AQ99250 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.64□□□□□ -2.67
SCN2AQ99250 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.65□□□□□ -2.67
SCN2AQ99250 RNU6-1206P-201ENST00000516339 103 ntBASIC-1.66□□□□□ -2.67
SCN2AQ99250 AC013734.1-201ENST00000619329 111 ntBASIC-1.66□□□□□ -2.67
SCN2AQ99250 MIR4662A-201ENST00000637499 67 ntBASIC-1.66□□□□□ -2.68
SCN2AQ99250 RNU6-1296P-201ENST00000383879 107 ntBASIC-1.67□□□□□ -2.68
SCN2AQ99250 MIR4756-201ENST00000577874 78 ntBASIC-1.67□□□□□ -2.68
SCN2AQ99250 MIR487B-201ENST00000385021 84 ntBASIC-1.67□□□□□ -2.68
SCN2AQ99250 RNU6-1275P-201ENST00000391087 107 ntBASIC-1.67□□□□□ -2.68
SCN2AQ99250 RNU6-776P-201ENST00000364403 104 ntBASIC-1.69□□□□□ -2.68
SCN2AQ99250 RNU6-1022P-201ENST00000365049 104 ntBASIC-1.69□□□□□ -2.68
SCN2AQ99250 Y_RNA.685-201ENST00000516532 108 ntBASIC-1.69□□□□□ -2.68
SCN2AQ99250 RNU6-118P-201ENST00000516552 102 ntBASIC-1.69□□□□□ -2.68
SCN2AQ99250 RNA5SP93-201ENST00000362525 114 ntBASIC-1.71□□□□□ -2.68
SCN2AQ99250 snoU13.10-201ENST00000459301 103 ntBASIC-1.71□□□□□ -2.68
SCN2AQ99250 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.71□□□□□ -2.68
SCN2AQ99250 MIR548W-201ENST00000581970 74 ntBASIC-1.71□□□□□ -2.68
SCN2AQ99250 MIR202-201ENST00000362219 110 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 RNA5SP405-201ENST00000363059 114 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 RNU6-980P-201ENST00000516925 103 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 MIR4426-201ENST00000640330 63 ntBASIC-1.73□□□□□ -2.69
SCN2AQ99250 MIR3139-201ENST00000579145 76 ntBASIC-1.74□□□□□ -2.69
SCN2AQ99250 MIR496-201ENST00000385226 102 ntBASIC-1.74□□□□□ -2.69
SCN2AQ99250 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.75□□□□□ -2.69
SCN2AQ99250 U6.111-201ENST00000636093 83 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 Y_RNA.69-201ENST00000362885 109 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 Y_RNA.565-201ENST00000384719 101 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 MIR548X-201ENST00000580069 75 ntBASIC-1.76□□□□□ -2.69
SCN2AQ99250 RNU6-590P-201ENST00000365039 107 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 SNORA17.4-201ENST00000391287 132 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 RNU6-122P-201ENST00000516818 107 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 RNU6-176P-201ENST00000517196 105 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 RNU6-530P-201ENST00000391180 107 ntBASIC-1.79□□□□□ -2.7
SCN2AQ99250 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.8□□□□□ -2.7
SCN2AQ99250 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.8□□□□□ -2.7
SCN2AQ99250 MIR581-201ENST00000384895 96 ntBASIC-1.8□□□□□ -2.7
SCN2AQ99250 RNU6-800P-201ENST00000384473 103 ntBASIC-1.82□□□□□ -2.7
SCN2AQ99250 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.82□□□□□ -2.7
SCN2AQ99250 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.83□□□□□ -2.7
SCN2AQ99250 AL451105.1-201ENST00000450005 189 ntBASIC-1.83□□□□□ -2.7
SCN2AQ99250 RNU6-300P-201ENST00000459080 104 ntBASIC-1.83□□□□□ -2.7
SCN2AQ99250 RNU6-419P-201ENST00000517030 63 ntBASIC-1.83□□□□□ -2.7
SCN2AQ99250 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.84□□□□□ -2.7
SCN2AQ99250 RNU4-88P-201ENST00000411220 86 ntBASIC-1.84□□□□□ -2.7
SCN2AQ99250 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.84□□□□□ -2.7
SCN2AQ99250 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.85□□□□□ -2.71
SCN2AQ99250 SNORD54-201ENST00000459159 67 ntBASIC-1.86□□□□□ -2.71
SCN2AQ99250 Y_RNA.386-201ENST00000383913 105 ntBASIC-1.87□□□□□ -2.71
SCN2AQ99250 RNU6-194P-201ENST00000363862 105 ntBASIC-1.88□□□□□ -2.71
SCN2AQ99250 RNU6-68P-201ENST00000516576 104 ntBASIC-1.88□□□□□ -2.71
SCN2AQ99250 AC114801.3-201ENST00000510231 177 ntBASIC-1.9□□□□□ -2.71
SCN2AQ99250 RNU6-912P-201ENST00000363800 104 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 MT-TM-201ENST00000387377 68 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 MIR4748-201ENST00000578076 82 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 MIR466-201ENST00000580653 84 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.91□□□□□ -2.71
SCN2AQ99250 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC-1.91□□□□□ -2.72
SCN2AQ99250 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.92□□□□□ -2.72
SCN2AQ99250 FTX_4.1-201ENST00000616291 147 ntBASIC-1.92□□□□□ -2.72
SCN2AQ99250 MIR4317-201ENST00000637586 65 ntBASIC-1.92□□□□□ -2.72
SCN2AQ99250 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 RNU6-1079P-201ENST00000362861 110 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 SNORA72.7-201ENST00000516349 94 ntBASIC-1.95□□□□□ -2.72
SCN2AQ99250 RNY4P9-201ENST00000363194 97 ntBASIC-1.96□□□□□ -2.72
SCN2AQ99250 RNU4-33P-201ENST00000364316 85 ntBASIC-1.96□□□□□ -2.72
SCN2AQ99250 MIR548AL-201ENST00000578416 97 ntBASIC-1.96□□□□□ -2.72
SCN2AQ99250 RNU6-742P-201ENST00000365289 107 ntBASIC-1.97□□□□□ -2.72
SCN2AQ99250 SNORD113-3-201ENST00000364830 72 ntBASIC-1.98□□□□□ -2.73
SCN2AQ99250 RNU6-1312P-201ENST00000362425 108 ntBASIC-1.99□□□□□ -2.73
SCN2AQ99250 Y_RNA.501-201ENST00000384467 103 ntBASIC-1.99□□□□□ -2.73
SCN2AQ99250 RNY4-201ENST00000516507 96 ntBASIC-1.99□□□□□ -2.73
SCN2AQ99250 RNU6-1306P-201ENST00000365219 99 ntBASIC-2□□□□□ -2.73
SCN2AQ99250 AC097484.2-201ENST00000509147 251 ntBASIC-2□□□□□ -2.73
SCN2AQ99250 RNU6-1047P-201ENST00000364418 107 ntBASIC-2.01□□□□□ -2.73
SCN2AQ99250 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-2.01□□□□□ -2.73
SCN2AQ99250 MIR548H4-201ENST00000408689 111 ntBASIC-2.02□□□□□ -2.73
SCN2AQ99250 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.03□□□□□ -2.73
SCN2AQ99250 RNU6-808P-201ENST00000391233 108 ntBASIC-2.03□□□□□ -2.73
Retrieved 100 of 98,524 protein–RNA pairs in 591.4 ms