Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 MIR587-201ENST00000384845 96 ntBASIC-1.19□□□□□ -2.6
GFRA1P56159 Y_RNA.379-201ENST00000365653 102 ntBASIC-1.21□□□□□ -2.6
GFRA1P56159 MIR548H1-201ENST00000408610 102 ntBASIC-1.21□□□□□ -2.6
GFRA1P56159 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.22□□□□□ -2.6
GFRA1P56159 RNU6-695P-201ENST00000391157 104 ntBASIC-1.22□□□□□ -2.6
GFRA1P56159 U6.97-201ENST00000636904 101 ntBASIC-1.22□□□□□ -2.6
GFRA1P56159 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.23□□□□□ -2.61
GFRA1P56159 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.23□□□□□ -2.61
GFRA1P56159 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.23□□□□□ -2.61
GFRA1P56159 MIR202-201ENST00000362219 110 ntBASIC-1.24□□□□□ -2.61
GFRA1P56159 MIR3123-201ENST00000583417 75 ntBASIC-1.24□□□□□ -2.61
GFRA1P56159 RNU6-361P-201ENST00000364454 107 ntBASIC-1.25□□□□□ -2.61
GFRA1P56159 SNORD60-201ENST00000383903 83 ntBASIC-1.25□□□□□ -2.61
GFRA1P56159 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.26□□□□□ -2.61
GFRA1P56159 MIR4426-201ENST00000640330 63 ntBASIC-1.27□□□□□ -2.61
GFRA1P56159 RNU6-753P-201ENST00000363926 107 ntBASIC-1.28□□□□□ -2.61
GFRA1P56159 Y_RNA.781-201ENST00000620301 103 ntBASIC-1.28□□□□□ -2.61
GFRA1P56159 RNU6-987P-201ENST00000384759 104 ntBASIC-1.29□□□□□ -2.62
GFRA1P56159 MIR581-201ENST00000384895 96 ntBASIC-1.29□□□□□ -2.62
GFRA1P56159 SNORA17.4-201ENST00000391287 132 ntBASIC-1.29□□□□□ -2.62
GFRA1P56159 RNU4-37P-201ENST00000410214 84 ntBASIC-1.3□□□□□ -2.62
GFRA1P56159 RNA5SP461-201ENST00000516451 104 ntBASIC-1.3□□□□□ -2.62
GFRA1P56159 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.3□□□□□ -2.62
GFRA1P56159 SNORD18.1-201ENST00000363807 70 ntBASIC-1.32□□□□□ -2.62
GFRA1P56159 RNU6-1034P-201ENST00000365335 101 ntBASIC-1.32□□□□□ -2.62
GFRA1P56159 RNU6-841P-201ENST00000383872 107 ntBASIC-1.32□□□□□ -2.62
GFRA1P56159 AC108019.1-201ENST00000512540 175 ntBASIC-1.32□□□□□ -2.62
GFRA1P56159 MIR4756-201ENST00000577874 78 ntBASIC-1.32□□□□□ -2.62
GFRA1P56159 MIR548AM-201ENST00000584298 74 ntBASIC-1.32□□□□□ -2.62
GFRA1P56159 RNU6-141P-201ENST00000410499 105 ntBASIC-1.33□□□□□ -2.62
GFRA1P56159 SNX3P1X-201ENST00000414887 175 ntBASIC-1.33□□□□□ -2.62
GFRA1P56159 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.34□□□□□ -2.62
GFRA1P56159 MIR4320-201ENST00000636981 65 ntBASIC-1.34□□□□□ -2.62
GFRA1P56159 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.35□□□□□ -2.63
GFRA1P56159 RNU6-742P-201ENST00000365289 107 ntBASIC-1.35□□□□□ -2.63
GFRA1P56159 snoU13.10-201ENST00000459301 103 ntBASIC-1.35□□□□□ -2.63
GFRA1P56159 MIR548W-201ENST00000581970 74 ntBASIC-1.35□□□□□ -2.63
GFRA1P56159 SNORD19B.1-201ENST00000630615 80 ntBASIC-1.35□□□□□ -2.63
GFRA1P56159 Y_RNA.502-201ENST00000384478 113 ntBASIC-1.36□□□□□ -2.63
GFRA1P56159 RNU6-300P-201ENST00000459080 104 ntBASIC-1.36□□□□□ -2.63
GFRA1P56159 RNU6-176P-201ENST00000517196 105 ntBASIC-1.36□□□□□ -2.63
GFRA1P56159 MIR548AL-201ENST00000578416 97 ntBASIC-1.36□□□□□ -2.63
GFRA1P56159 RNU4-88P-201ENST00000411220 86 ntBASIC-1.37□□□□□ -2.63
GFRA1P56159 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.37□□□□□ -2.63
GFRA1P56159 RNU6-838P-201ENST00000363399 108 ntBASIC-1.38□□□□□ -2.63
GFRA1P56159 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.38□□□□□ -2.63
GFRA1P56159 MIR1246-201ENST00000636535 73 ntBASIC-1.38□□□□□ -2.63
GFRA1P56159 MIR548N-201ENST00000408742 75 ntBASIC-1.39□□□□□ -2.63
GFRA1P56159 SNORD18C-201ENST00000362704 69 ntBASIC-1.42□□□□□ -2.64
GFRA1P56159 RNU6-983P-201ENST00000516004 103 ntBASIC-1.42□□□□□ -2.64
GFRA1P56159 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.43□□□□□ -2.64
GFRA1P56159 RNU6-930P-201ENST00000390938 100 ntBASIC-1.44□□□□□ -2.64
GFRA1P56159 MIR664B-201ENST00000626756 61 ntBASIC-1.44□□□□□ -2.64
GFRA1P56159 MIR198-201ENST00000637333 62 ntBASIC-1.44□□□□□ -2.64
GFRA1P56159 Y_RNA.211-201ENST00000364164 101 ntBASIC-1.45□□□□□ -2.64
GFRA1P56159 RNU6-68P-201ENST00000516576 104 ntBASIC-1.45□□□□□ -2.64
GFRA1P56159 Y_RNA.284-201ENST00000364806 102 ntBASIC-1.46□□□□□ -2.64
GFRA1P56159 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-1.46□□□□□ -2.64
GFRA1P56159 RNU6-1204P-201ENST00000363948 107 ntBASIC-1.47□□□□□ -2.64
GFRA1P56159 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.47□□□□□ -2.64
GFRA1P56159 RNU6-1047P-201ENST00000364418 107 ntBASIC-1.48□□□□□ -2.65
GFRA1P56159 MIR601-201ENST00000385256 79 ntBASIC-1.48□□□□□ -2.65
GFRA1P56159 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.48□□□□□ -2.65
GFRA1P56159 RNA5SP180-201ENST00000516181 101 ntBASIC-1.48□□□□□ -2.65
GFRA1P56159 RNU6-912P-201ENST00000363800 104 ntBASIC-1.5□□□□□ -2.65
GFRA1P56159 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.5□□□□□ -2.65
GFRA1P56159 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.5□□□□□ -2.65
GFRA1P56159 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.5□□□□□ -2.65
GFRA1P56159 MIR4317-201ENST00000637586 65 ntBASIC-1.5□□□□□ -2.65
GFRA1P56159 MIRLET7A2-201ENST00000362105 72 ntBASIC-1.51□□□□□ -2.65
GFRA1P56159 MIR548AJ2-201ENST00000408539 92 ntBASIC-1.51□□□□□ -2.65
GFRA1P56159 SNORD113-3-201ENST00000364830 72 ntBASIC-1.52□□□□□ -2.65
GFRA1P56159 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.52□□□□□ -2.65
GFRA1P56159 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-1.52□□□□□ -2.65
GFRA1P56159 Y_RNA.320-201ENST00000365144 102 ntBASIC-1.53□□□□□ -2.65
GFRA1P56159 Y_RNA.564-201ENST00000384708 106 ntBASIC-1.53□□□□□ -2.65
GFRA1P56159 AC097484.2-201ENST00000509147 251 ntBASIC-1.54□□□□□ -2.66
GFRA1P56159 RNU6-118P-201ENST00000516552 102 ntBASIC-1.54□□□□□ -2.66
GFRA1P56159 RNA5SP405-201ENST00000363059 114 ntBASIC-1.55□□□□□ -2.66
GFRA1P56159 Y_RNA.129-201ENST00000363392 110 ntBASIC-1.55□□□□□ -2.66
GFRA1P56159 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.55□□□□□ -2.66
GFRA1P56159 RNU6-194P-201ENST00000363862 105 ntBASIC-1.56□□□□□ -2.66
GFRA1P56159 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.56□□□□□ -2.66
GFRA1P56159 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.56□□□□□ -2.66
GFRA1P56159 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.56□□□□□ -2.66
GFRA1P56159 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.56□□□□□ -2.66
GFRA1P56159 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.56□□□□□ -2.66
GFRA1P56159 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.56□□□□□ -2.66
GFRA1P56159 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.56□□□□□ -2.66
GFRA1P56159 MIR1285-2-201ENST00000408311 88 ntBASIC-1.57□□□□□ -2.66
GFRA1P56159 MIR548F3-201ENST00000408509 87 ntBASIC-1.57□□□□□ -2.66
GFRA1P56159 MIR379-201ENST00000362218 67 ntBASIC-1.59□□□□□ -2.66
GFRA1P56159 MIR1254-1-201ENST00000408257 97 ntBASIC-1.59□□□□□ -2.66
GFRA1P56159 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.6□□□□□ -2.67
GFRA1P56159 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.6□□□□□ -2.67
GFRA1P56159 FTX_4.1-201ENST00000616291 147 ntBASIC-1.6□□□□□ -2.67
GFRA1P56159 DLEU2_4.2-201ENST00000616613 58 ntBASIC-1.6□□□□□ -2.67
GFRA1P56159 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-1.61□□□□□ -2.67
GFRA1P56159 MIR4748-201ENST00000578076 82 ntBASIC-1.62□□□□□ -2.67
GFRA1P56159 VTRNA2-1-201ENST00000602301 127 ntBASIC-1.62□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 853.3 ms