Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MIR548AL-201ENST00000578416 97 ntBASIC-4.85□□□□□ -3.19
CUX1P39880 MIR3171-201ENST00000584270 74 ntBASIC-4.86□□□□□ -3.19
CUX1P39880 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-4.86□□□□□ -3.19
CUX1P39880 RNU6-1023P-201ENST00000516137 106 ntBASIC-4.87□□□□□ -3.19
CUX1P39880 MTND4P29-201ENST00000503122 1372 ntBASIC-4.87□□□□□ -3.19
CUX1P39880 RNU6-255P-201ENST00000516957 105 ntBASIC-4.87□□□□□ -3.19
CUX1P39880 Y_RNA.216-201ENST00000364205 93 ntBASIC-4.88□□□□□ -3.19
CUX1P39880 Y_RNA.273-201ENST00000364703 102 ntBASIC-4.88□□□□□ -3.19
CUX1P39880 MTATP8P1-201ENST00000467115 207 ntBASIC-4.89□□□□□ -3.19
CUX1P39880 RNU6-687P-201ENST00000516443 89 ntBASIC-4.89□□□□□ -3.19
CUX1P39880 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-4.89□□□□□ -3.19
CUX1P39880 RNU6-907P-201ENST00000390924 102 ntBASIC-4.91□□□□□ -3.2
CUX1P39880 Y_RNA.297-201ENST00000364950 91 ntBASIC-4.92□□□□□ -3.2
CUX1P39880 RNU6-623P-201ENST00000363143 105 ntBASIC-4.92□□□□□ -3.2
CUX1P39880 RNU6-627P-201ENST00000364032 102 ntBASIC-4.93□□□□□ -3.2
CUX1P39880 RNU6-257P-201ENST00000410238 98 ntBASIC-4.94□□□□□ -3.2
CUX1P39880 RNU6-804P-201ENST00000384286 107 ntBASIC-4.95□□□□□ -3.2
CUX1P39880 Y_RNA.138-201ENST00000363462 102 ntBASIC-4.96□□□□□ -3.2
CUX1P39880 RNU6-1204P-201ENST00000363948 107 ntBASIC-4.96□□□□□ -3.2
CUX1P39880 MIR3134-201ENST00000579433 74 ntBASIC-4.96□□□□□ -3.2
CUX1P39880 Y_RNA.619-201ENST00000410951 90 ntBASIC-4.97□□□□□ -3.2
CUX1P39880 RNU6-808P-201ENST00000391233 108 ntBASIC-4.97□□□□□ -3.21
CUX1P39880 Y_RNA.788-201ENST00000622394 112 ntBASIC-4.98□□□□□ -3.21
CUX1P39880 Y_RNA.460-201ENST00000384255 102 ntBASIC-4.99□□□□□ -3.21
CUX1P39880 RNU6-675P-201ENST00000384236 104 ntBASIC-5□□□□□ -3.21
CUX1P39880 AC062037.2-201ENST00000610137 73 ntBASIC-5□□□□□ -3.21
CUX1P39880 MIR4760-201ENST00000585040 80 ntBASIC-5.01□□□□□ -3.21
CUX1P39880 RNU6-663P-201ENST00000391105 106 ntBASIC-5.02□□□□□ -3.21
CUX1P39880 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC-5.02□□□□□ -3.21
CUX1P39880 Y_RNA.343-201ENST00000365354 112 ntBASIC-5.02□□□□□ -3.21
CUX1P39880 AC090425.1-201ENST00000610007 140 ntBASIC-5.02□□□□□ -3.21
CUX1P39880 RNU6-1312P-201ENST00000362425 108 ntBASIC-5.05□□□□□ -3.22
CUX1P39880 SNORA25.4-201ENST00000363666 124 ntBASIC-5.06□□□□□ -3.22
CUX1P39880 MIR548F4-201ENST00000408515 105 ntBASIC-5.06□□□□□ -3.22
CUX1P39880 RNU4-33P-201ENST00000364316 85 ntBASIC-5.07□□□□□ -3.22
CUX1P39880 Y_RNA.316-201ENST00000365118 111 ntBASIC-5.08□□□□□ -3.22
CUX1P39880 MT-TD-201ENST00000387419 68 ntBASIC-5.08□□□□□ -3.22
CUX1P39880 MIR4511-201ENST00000582784 87 ntBASIC-5.08□□□□□ -3.22
CUX1P39880 MALAT1.1-201ENST00000618249 95 ntBASIC-5.08□□□□□ -3.22
CUX1P39880 RNU6-59P-201ENST00000384787 107 ntBASIC-5.09□□□□□ -3.22
CUX1P39880 MTND5P41-201ENST00000517498 206 ntBASIC-5.1□□□□□ -3.23
CUX1P39880 RNU6-209P-201ENST00000384118 107 ntBASIC-5.12□□□□□ -3.23
CUX1P39880 MIR1245B-201ENST00000636115 69 ntBASIC-5.12□□□□□ -3.23
CUX1P39880 RNU6-620P-201ENST00000384017 96 ntBASIC-5.13□□□□□ -3.23
CUX1P39880 SNORA40.13-201ENST00000516379 120 ntBASIC-5.13□□□□□ -3.23
CUX1P39880 Y_RNA.149-201ENST00000363558 117 ntBASIC-5.14□□□□□ -3.23
CUX1P39880 Y_RNA.422-201ENST00000384054 114 ntBASIC-5.16□□□□□ -3.24
CUX1P39880 AC103706.3-201ENST00000636297 85 ntBASIC-5.16□□□□□ -3.24
CUX1P39880 SNORD113-1-201ENST00000365321 69 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 IGLL4P-201ENST00000614590 133 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 MTND5P20-201ENST00000448677 143 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 RNU6-634P-201ENST00000459134 106 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 AL353621.2-201ENST00000605340 133 ntBASIC-5.18□□□□□ -3.24
CUX1P39880 RNU6-959P-201ENST00000384671 107 ntBASIC-5.19□□□□□ -3.24
CUX1P39880 RNU6-986P-201ENST00000363133 102 ntBASIC-5.2□□□□□ -3.24
CUX1P39880 snoMBII-202.2-201ENST00000517263 86 ntBASIC-5.2□□□□□ -3.24
CUX1P39880 RNU6-446P-201ENST00000362827 106 ntBASIC-5.21□□□□□ -3.24
CUX1P39880 MIR4712-201ENST00000583750 82 ntBASIC-5.21□□□□□ -3.24
CUX1P39880 SNORD30.1-201ENST00000391309 70 ntBASIC-5.22□□□□□ -3.24
CUX1P39880 MIR494-201ENST00000349529 81 ntBASIC-5.23□□□□□ -3.25
CUX1P39880 RNU6-200P-201ENST00000364743 107 ntBASIC-5.24□□□□□ -3.25
CUX1P39880 AP000770.2-201ENST00000623694 100 ntBASIC-5.24□□□□□ -3.25
CUX1P39880 AC110620.1-201ENST00000416042 228 ntBASIC-5.25□□□□□ -3.25
CUX1P39880 RNU6-844P-201ENST00000517175 102 ntBASIC-5.25□□□□□ -3.25
CUX1P39880 MIR5588-201ENST00000581890 63 ntBASIC-5.25□□□□□ -3.25
CUX1P39880 U7.4-201ENST00000614961 63 ntBASIC-5.25□□□□□ -3.25
CUX1P39880 RNU7-171P-201ENST00000459581 62 ntBASIC-5.26□□□□□ -3.25
CUX1P39880 Y_RNA.94-201ENST00000363068 106 ntBASIC-5.27□□□□□ -3.25
CUX1P39880 MIR1302-3-201ENST00000408128 138 ntBASIC-5.28□□□□□ -3.25
CUX1P39880 RNU7-200P-201ENST00000516105 62 ntBASIC-5.28□□□□□ -3.26
CUX1P39880 SNORD113-4-201ENST00000364802 75 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 SNORD116-14-201ENST00000383894 92 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 SNORD116-17-201ENST00000383929 92 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 SNORD116-15-201ENST00000384445 92 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 SNORD116-19-201ENST00000384729 92 ntBASIC-5.3□□□□□ -3.26
CUX1P39880 Y_RNA.73-201ENST00000362910 113 ntBASIC-5.31□□□□□ -3.26
CUX1P39880 AL031737.1-201ENST00000450125 223 ntBASIC-5.32□□□□□ -3.26
CUX1P39880 RNU6-838P-201ENST00000363399 108 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 Y_RNA.379-201ENST00000365653 102 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 MIR568-201ENST00000385036 95 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 MTCYBP6-201ENST00000441810 138 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 AC114801.3-201ENST00000510231 177 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 Y_RNA.702-201ENST00000516843 96 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 AC008737.2-201ENST00000599446 118 ntBASIC-5.33□□□□□ -3.26
CUX1P39880 MIR4679-1-201ENST00000637619 75 ntBASIC-5.35□□□□□ -3.27
CUX1P39880 RNU6-81P-201ENST00000365608 104 ntBASIC-5.36□□□□□ -3.27
CUX1P39880 RNU6-1160P-201ENST00000384546 104 ntBASIC-5.36□□□□□ -3.27
CUX1P39880 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-5.36□□□□□ -3.27
CUX1P39880 MTCYBP9-201ENST00000431021 303 ntBASIC-5.36□□□□□ -3.27
CUX1P39880 Y_RNA.489-201ENST00000384410 101 ntBASIC-5.38□□□□□ -3.27
CUX1P39880 RNU6-589P-201ENST00000516485 107 ntBASIC-5.38□□□□□ -3.27
CUX1P39880 U6.111-201ENST00000636093 83 ntBASIC-5.38□□□□□ -3.27
CUX1P39880 RNU6-294P-201ENST00000364999 102 ntBASIC-5.38□□□□□ -3.27
CUX1P39880 MIR488-201ENST00000365739 83 ntBASIC-5.39□□□□□ -3.27
CUX1P39880 RNU6-787P-201ENST00000384032 107 ntBASIC-5.39□□□□□ -3.27
CUX1P39880 AC044792.1-201ENST00000593294 196 ntBASIC-5.41□□□□□ -3.28
CUX1P39880 MIR450A1-201ENST00000362262 91 ntBASIC-5.42□□□□□ -3.28
CUX1P39880 Y_RNA.593-201ENST00000410292 98 ntBASIC-5.44□□□□□ -3.28
CUX1P39880 RNU6-346P-201ENST00000516288 111 ntBASIC-5.45□□□□□ -3.28
CUX1P39880 Y_RNA.193-201ENST00000363979 102 ntBASIC-5.47□□□□□ -3.28
Retrieved 100 of 98,524 protein–RNA pairs in 215.2 ms