Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 U6.97-201ENST00000636904 101 ntBASIC-0.73□□□□□ -2.53
MSX2P35548 MIR4317-201ENST00000637586 65 ntBASIC-0.73□□□□□ -2.53
MSX2P35548 RNU6-822P-201ENST00000362707 106 ntBASIC-0.75□□□□□ -2.53
MSX2P35548 Y_RNA.223-201ENST00000364290 113 ntBASIC-0.75□□□□□ -2.53
MSX2P35548 SNX3P1X-201ENST00000414887 175 ntBASIC-0.75□□□□□ -2.53
MSX2P35548 SCARNA17-201ENST00000516183 144 ntBASIC-0.75□□□□□ -2.53
MSX2P35548 RNU6-59P-201ENST00000384787 107 ntBASIC-0.77□□□□□ -2.53
MSX2P35548 RNU6-1326P-201ENST00000391262 107 ntBASIC-0.77□□□□□ -2.53
MSX2P35548 MIR587-201ENST00000384845 96 ntBASIC-0.78□□□□□ -2.53
MSX2P35548 RNU6-576P-201ENST00000390854 102 ntBASIC-0.78□□□□□ -2.53
MSX2P35548 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.79□□□□□ -2.54
MSX2P35548 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.8□□□□□ -2.54
MSX2P35548 RNU6-68P-201ENST00000516576 104 ntBASIC-0.8□□□□□ -2.54
MSX2P35548 AC091912.2-201ENST00000624798 167 ntBASIC-0.8□□□□□ -2.54
MSX2P35548 SNORD18C-201ENST00000362704 69 ntBASIC-0.81□□□□□ -2.54
MSX2P35548 MIR6874-201ENST00000635894 71 ntBASIC-0.81□□□□□ -2.54
MSX2P35548 Y_RNA.345-201ENST00000365384 92 ntBASIC-0.82□□□□□ -2.54
MSX2P35548 MIR196A1-201ENST00000388006 70 ntBASIC-0.82□□□□□ -2.54
MSX2P35548 MIR4499-201ENST00000584834 69 ntBASIC-0.82□□□□□ -2.54
MSX2P35548 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-0.83□□□□□ -2.54
MSX2P35548 MIR4320-201ENST00000636981 65 ntBASIC-0.83□□□□□ -2.54
MSX2P35548 Y_RNA.129-201ENST00000363392 110 ntBASIC-0.84□□□□□ -2.54
MSX2P35548 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.85□□□□□ -2.55
MSX2P35548 uc_338.19-201ENST00000616808 99 ntBASIC-0.85□□□□□ -2.55
MSX2P35548 MIR198-201ENST00000637333 62 ntBASIC-0.85□□□□□ -2.55
MSX2P35548 RNU6-695P-201ENST00000391157 104 ntBASIC-0.87□□□□□ -2.55
MSX2P35548 MIR6738-201ENST00000619620 64 ntBASIC-0.87□□□□□ -2.55
MSX2P35548 MIR4324-201ENST00000584846 72 ntBASIC-0.88□□□□□ -2.55
MSX2P35548 Y_RNA.320-201ENST00000365144 102 ntBASIC-0.89□□□□□ -2.55
MSX2P35548 RNU6-10P-201ENST00000384036 107 ntBASIC-0.89□□□□□ -2.55
MSX2P35548 RNU6-400P-201ENST00000391173 106 ntBASIC-0.89□□□□□ -2.55
MSX2P35548 MIR379-201ENST00000362218 67 ntBASIC-0.9□□□□□ -2.55
MSX2P35548 MIR601-201ENST00000385256 79 ntBASIC-0.9□□□□□ -2.55
MSX2P35548 SNORD83B-201ENST00000386745 93 ntBASIC-0.9□□□□□ -2.55
MSX2P35548 MIR4723-201ENST00000585070 81 ntBASIC-0.91□□□□□ -2.56
MSX2P35548 MIR548AJ2-201ENST00000408539 92 ntBASIC-0.94□□□□□ -2.56
MSX2P35548 Y_RNA.382-201ENST00000365672 114 ntBASIC-0.96□□□□□ -2.56
MSX2P35548 SNORD19B.1-201ENST00000630615 80 ntBASIC-0.96□□□□□ -2.56
MSX2P35548 Y_RNA.206-201ENST00000364136 102 ntBASIC-0.97□□□□□ -2.56
MSX2P35548 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.98□□□□□ -2.57
MSX2P35548 MIR8485-201ENST00000401372 91 ntBASIC-0.98□□□□□ -2.57
MSX2P35548 RNU6-1034P-201ENST00000365335 101 ntBASIC-0.99□□□□□ -2.57
MSX2P35548 MIR3115-201ENST00000577915 68 ntBASIC-1□□□□□ -2.57
MSX2P35548 U4.2-201ENST00000618561 85 ntBASIC-1.01□□□□□ -2.57
MSX2P35548 RNU6-912P-201ENST00000363800 104 ntBASIC-1.02□□□□□ -2.57
MSX2P35548 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.02□□□□□ -2.57
MSX2P35548 Y_RNA.449-201ENST00000384187 102 ntBASIC-1.02□□□□□ -2.57
MSX2P35548 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.02□□□□□ -2.57
MSX2P35548 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.02□□□□□ -2.57
MSX2P35548 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.02□□□□□ -2.57
MSX2P35548 MIR6502-201ENST00000617296 76 ntBASIC-1.02□□□□□ -2.57
MSX2P35548 U6.103-201ENST00000637085 61 ntBASIC-1.03□□□□□ -2.57
MSX2P35548 MIR3123-201ENST00000583417 75 ntBASIC-1.04□□□□□ -2.58
MSX2P35548 Y_RNA.134-201ENST00000363435 105 ntBASIC-1.07□□□□□ -2.58
MSX2P35548 Y_RNA.175-201ENST00000363794 111 ntBASIC-1.07□□□□□ -2.58
MSX2P35548 RNA5SP461-201ENST00000516451 104 ntBASIC-1.07□□□□□ -2.58
MSX2P35548 MIR378F-201ENST00000578143 78 ntBASIC-1.07□□□□□ -2.58
MSX2P35548 MIR548H1-201ENST00000408610 102 ntBASIC-1.08□□□□□ -2.58
MSX2P35548 RNU6-724P-201ENST00000390958 105 ntBASIC-1.1□□□□□ -2.59
MSX2P35548 SNORD115.2-201ENST00000391126 59 ntBASIC-1.1□□□□□ -2.59
MSX2P35548 MIR4306-201ENST00000583390 91 ntBASIC-1.11□□□□□ -2.59
MSX2P35548 Y_RNA.349-201ENST00000365406 102 ntBASIC-1.12□□□□□ -2.59
MSX2P35548 RNU6-1324P-201ENST00000384222 107 ntBASIC-1.12□□□□□ -2.59
MSX2P35548 RNA5SP180-201ENST00000516181 101 ntBASIC-1.12□□□□□ -2.59
MSX2P35548 MIAT_exon5_2.1-201ENST00000613562 85 ntBASIC-1.12□□□□□ -2.59
MSX2P35548 ZEB2_AS1_4.1-201ENST00000615159 78 ntBASIC-1.12□□□□□ -2.59
MSX2P35548 RNU6-1169P-201ENST00000363537 103 ntBASIC-1.13□□□□□ -2.59
MSX2P35548 MIR1207-201ENST00000408249 87 ntBASIC-1.13□□□□□ -2.59
MSX2P35548 MIR3165-201ENST00000579874 75 ntBASIC-1.13□□□□□ -2.59
MSX2P35548 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.14□□□□□ -2.59
MSX2P35548 snoU13.10-201ENST00000459301 103 ntBASIC-1.14□□□□□ -2.59
MSX2P35548 MIR548W-201ENST00000581970 74 ntBASIC-1.14□□□□□ -2.59
MSX2P35548 RNA5SP224-201ENST00000365069 126 ntBASIC-1.15□□□□□ -2.59
MSX2P35548 RNU6-841P-201ENST00000383872 107 ntBASIC-1.15□□□□□ -2.59
MSX2P35548 FTX_4.1-201ENST00000616291 147 ntBASIC-1.15□□□□□ -2.59
MSX2P35548 RNU6-836P-201ENST00000362920 107 ntBASIC-1.16□□□□□ -2.6
MSX2P35548 Y_RNA.260-201ENST00000364628 101 ntBASIC-1.16□□□□□ -2.6
MSX2P35548 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.16□□□□□ -2.6
MSX2P35548 SNORD114-3-201ENST00000364969 75 ntBASIC-1.17□□□□□ -2.6
MSX2P35548 MIR4520-1-201ENST00000582609 70 ntBASIC-1.17□□□□□ -2.6
MSX2P35548 MIR365A-201ENST00000362260 87 ntBASIC-1.18□□□□□ -2.6
MSX2P35548 Y_RNA.103-201ENST00000363171 102 ntBASIC-1.18□□□□□ -2.6
MSX2P35548 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.19□□□□□ -2.6
MSX2P35548 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.21□□□□□ -2.6
MSX2P35548 MIR548AM-201ENST00000584298 74 ntBASIC-1.21□□□□□ -2.6
MSX2P35548 RNU6-345P-201ENST00000517001 107 ntBASIC-1.22□□□□□ -2.6
MSX2P35548 AC138207.3-201ENST00000585289 166 ntBASIC-1.22□□□□□ -2.6
MSX2P35548 Y_RNA.434-201ENST00000384090 100 ntBASIC-1.23□□□□□ -2.61
MSX2P35548 MIR1254-1-201ENST00000408257 97 ntBASIC-1.23□□□□□ -2.61
MSX2P35548 MIR4441-201ENST00000582623 100 ntBASIC-1.23□□□□□ -2.61
MSX2P35548 MIR1285-2-201ENST00000408311 88 ntBASIC-1.24□□□□□ -2.61
MSX2P35548 SNORD113-3-201ENST00000364830 72 ntBASIC-1.25□□□□□ -2.61
MSX2P35548 SNORD111B-201ENST00000408587 80 ntBASIC-1.25□□□□□ -2.61
MSX2P35548 RNU6ATAC14P-201ENST00000516218 91 ntBASIC-1.25□□□□□ -2.61
MSX2P35548 SNORD45C-201ENST00000383893 79 ntBASIC-1.26□□□□□ -2.61
MSX2P35548 RNA5SP86-201ENST00000390869 98 ntBASIC-1.26□□□□□ -2.61
MSX2P35548 MIR487B-201ENST00000385021 84 ntBASIC-1.28□□□□□ -2.61
MSX2P35548 RNU6-706P-201ENST00000517229 104 ntBASIC-1.29□□□□□ -2.62
MSX2P35548 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.3□□□□□ -2.62
MSX2P35548 Y_RNA.335-201ENST00000365299 96 ntBASIC-1.31□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 237.9 ms